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Gene: Gse1 (Gse1 coiled-coil protein) Rattus norvegicus

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Symbol:

Gse1

Name:

Gse1 coiled-coil protein

RGD ID:

1562686

Description:

Predicted to act upstream of or within gene expression; in utero embryonic development; and placenta development. Human ortholog(s) of this gene implicated in stomach cancer. Orthologous to human GSE1 (Gse1 coiled-coil protein); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

genetic suppressor element 1; LOC307913; RGD1562686; similar to genetic suppressor element 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GSE1 (Gse1 coiled-coil protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Gse1 (genetic suppressor element 1, coiled-coil protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gse1 (Gse1 coiled-coil protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GSE1 (Gse1 coiled-coil protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GSE1 (Gse1 coiled-coil protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gse1 (Gse1 coiled-coil protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GSE1 (Gse1 coiled-coil protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GSE1 (Gse1 coiled-coil protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gse1 (Gse1 coiled-coil protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Gse1 (Gse1 coiled-coil protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	RHOBTB2 (Rho related BTB domain containing 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	GSE1 (Gse1 coiled-coil protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Gse1 (genetic suppressor element 1, coiled-coil protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gse1 (Gse1 coiled-coil protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gse1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gse1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	px	Alliance	DIOPT (OrthoInspector\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	65,182,678 - 65,538,183 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	65,446,263 - 65,538,176 (+)	Ensembl				GRCr8
mRatBN7.2	19	48,274,164 - 48,629,456 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	48,274,127 - 48,629,458 (+)	Ensembl				mRatBN7.2
Rnor_6.0	19	53,799,945 - 54,153,732 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	54,060,622 - 54,148,970 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	64,529,034 - 64,876,612 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	50,874,475 - 50,916,263 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	47,529,902 - 47,883,061 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

stomach cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (EXP,ISO)

alpha-pinene (ISO)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

cannabidiol (ISO)

choline (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

clotrimazole (EXP)

copper(II) sulfate (ISO)

coumarin (ISO)

decabromodiphenyl ether (EXP)

diazinon (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

ethanol (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

glyphosate (EXP)

L-methionine (ISO)

lead(0) (ISO)

leflunomide (ISO)

methimazole (EXP)

methoxychlor (EXP)

methylmercury chloride (ISO)

nickel sulfate (ISO)

orphenadrine (EXP)

ozone (ISO)

paracetamol (ISO)

pirinixic acid (ISO)

propiconazole (EXP)

quercetin (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

Soman (EXP)

sunitinib (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

gene expression (ISO)

in utero embryonic development (ISO)

placenta development (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	GSE1 predicts poor survival outcome in gastric cancer patients by SLC7A5 enhancement of tumor growth and metastasis.	Ding K, etal., J Biol Chem. 2018 Mar 16;293(11):3949-3964. doi: 10.1074/jbc.RA117.001103. Epub 2018 Jan 24.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Gse1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	65,182,678 - 65,538,183 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	65,446,263 - 65,538,176 (+)	Ensembl				GRCr8
mRatBN7.2	19	48,274,164 - 48,629,456 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	48,274,127 - 48,629,458 (+)	Ensembl				mRatBN7.2
Rnor_6.0	19	53,799,945 - 54,153,732 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	54,060,622 - 54,148,970 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	64,529,034 - 64,876,612 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	50,874,475 - 50,916,263 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	47,529,902 - 47,883,061 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

GSE1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	85,169,512 - 85,676,200 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	85,169,525 - 85,676,204 (+)	Ensembl			hg38	GRCh38
GRCh37	16	85,645,015 - 85,709,806 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	84,204,425 - 84,267,313 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	16	69,950,111 - 70,012,922 (+)	NCBI		Celera
Cytogenetic Map	16	q24.1	NCBI
HuRef	16	71,388,821 - 71,451,974 (+)	NCBI		HuRef
CHM1_1	16	87,056,381 - 87,121,164 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	91,235,680 - 91,741,713 (+)	NCBI		T2T-CHM13v2.0

Gse1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	120,955,233 - 121,308,122 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	120,955,195 - 121,308,129 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	120,228,501 - 120,581,383 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	120,228,456 - 120,581,390 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	123,012,766 - 123,105,283 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	123,374,843 - 123,467,354 (+)	NCBI		MGSCv36	mm8
Celera	8	124,703,936 - 124,797,008 (+)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	69.69	NCBI

Gse1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955541	720,458 - 808,174 (+)	Ensembl
ChiLan1.0	NW_004955541	517,715 - 808,174 (+)	NCBI	ChiLan1.0	ChiLan1.0

GSE1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	94,921,665 - 95,423,969 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	100,838,710 - 101,341,245 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	65,838,691 - 66,340,644 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	85,178,960 - 85,680,262 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	85,617,854 - 85,680,262 (+)	Ensembl			panPan2	panpan1.1

GSE1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	66,997,948 - 67,391,587 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	67,001,022 - 67,180,979 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	67,013,772 - 67,426,986 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	67,225,804 - 67,644,827 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	67,229,422 - 67,447,900 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	67,247,427 - 67,660,851 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	67,081,809 - 67,495,089 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	67,496,368 - 67,910,071 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Gse1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	27,023,638 - 27,309,824 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936641	2,776,714 - 2,862,484 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936641	2,779,521 - 2,920,840 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GSE1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	3,246,764 - 3,349,122 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	3,244,167 - 3,657,636 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	3,553,241 - 3,612,190 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GSE1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	70,585,176 - 71,087,575 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	70,966,855 - 71,083,912 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	4,653,400 - 4,967,774 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gse1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	2,027,893 - 2,108,734 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	1,842,635 - 2,106,466 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Gse1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	40,127,450 - 40,220,094 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	50
Count of miRNA genes:	35
Interacting mature miRNAs:	35
Transcripts:	ENSRNOT00000023607, ENSRNOT00000068572
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	46226778	74246245	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	24093973	69093973	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
2303628	Vencon9	Ventilatory control QTL 9		0.005	respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	19	23188586	68188586	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	44385134	74246245	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
5135224	Leukc1	Leukocyte quantity QTL 1			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	19	61249161	74246245	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
1554318	Bmd5	Bone mineral density QTL 5	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	19	23188586	68188586	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	41722546	74246245	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat

Markers in Region

BE108343

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	48,627,603 - 48,627,794 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	54,151,882 - 54,152,072	NCBI	Rnor6.0
Rnor_5.0	19	64,874,762 - 64,874,952	UniSTS	Rnor5.0
RGSC_v3.4	19	50,915,942 - 50,916,132	UniSTS	RGSC3.4
Celera	19	47,881,211 - 47,881,401	UniSTS
RH 3.4 Map	19	648.3	UniSTS
Cytogenetic Map	19	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
18	13	86	195	91	90	59	149	59	6	477	280	25	177	112	116	31	35	35

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001078877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008774246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008774248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008774249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008774250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC099158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000023607 ⟹ ENSRNOP00000023607

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	65,494,660 - 65,538,176 (+)	Ensembl
mRatBN7.2 Ensembl	19	48,585,961 - 48,629,458 (+)	Ensembl
Rnor_6.0 Ensembl	19	54,060,622 - 54,148,970 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094643 ⟹ ENSRNOP00000091424

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	65,446,263 - 65,538,176 (+)	Ensembl
mRatBN7.2 Ensembl	19	48,274,127 - 48,629,458 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097001 ⟹ ENSRNOP00000084243

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	65,446,263 - 65,538,176 (+)	Ensembl
mRatBN7.2 Ensembl	19	48,536,103 - 48,629,458 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108224 ⟹ ENSRNOP00000079149

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	48,535,065 - 48,629,458 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112263 ⟹ ENSRNOP00000093058

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	48,535,065 - 48,629,458 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112924 ⟹ ENSRNOP00000087793

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	65,494,605 - 65,536,142 (+)	Ensembl
mRatBN7.2 Ensembl	19	48,274,127 - 48,629,458 (+)	Ensembl

RefSeq Acc Id:

NM_001427026 ⟹ NP_001413955

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	65,494,660 - 65,538,176 (+)	NCBI

RefSeq Acc Id:

XM_017601449 ⟹ XP_017456938

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	65,182,678 - 65,538,183 (+)	NCBI
mRatBN7.2	19	48,274,379 - 48,629,456 (+)	NCBI
Rnor_6.0	19	53,799,946 - 54,153,732 (+)	NCBI

Sequence:

show sequence

GCCGGAACCCGAGGATGCGCACGATTCCACCAAGTCTGGAGCCCGGCGCCGGCGCACGGGGTCA
GGGGCGCACTGGGCTCCCGAACCGCGGGCCAGCGTGCTAAGGGGCATCCAGGAGCCCTGGCCCA
GCCCCGCTGCATCCGACGGCACGGACGGCGCCGCCTCCAGCCGTCCCGCGGCGCTCCCAGAGCG
CAGCAACACCCCTGAGGGCAGCGACGTCGCGGGGAGCCTCGGGGACGAAGGTCTGGAGCGGCCT
CCCCGGACGCCTGCGGACAGCCAGGCCCGCTGTTGCTACGTCTGTGGCTCAGCGCTGTCACCGG
CCTCGCAGCAGCAGATCCACGTGCAGAAGCAGGAGACTCCCTCCCAGGCGCCCTTCTTCCCCTT
CTTGTGGCTGCACAGCCCCCCGCCCGGTGCCCAGCCCATCACCGAGGCGGGCAGCACCCTCGTG
TGTCCCTGCTGCTTCTCGTCCCTCACGCACCAGTGGCAGAGCTTCGAGCTGGCCAACGTGCCTG
TCCTGCAGCGGCTCTACGTGGTGCCCCTGAACAGCCACGCCCCCGGCATGGCCTCCAAGGCCCG
GAGACTCCCTAGAGAAGAGGGGCCCGCCCCCACCGCGGGGCTACTGAGGGAAGCCTGCTACCTC
TGCGGGGAGGACTGTACGCGGGATGCCCGGGCTGTGCCCTCCCGCCTTGTCAACGGCAACTCTG
GGGGCTCCATGCACTTCCCCTTCCTTAGCCTCCTGCCCTGCCCACCTAATGCTCGGCCCCCCAA
TAAGCGCTGCGAGGTTCGCAGCTGCCCCAAGTGCTTCAGCGTCCTGGAGGACGTCTGGGCCCTG
TACCGAGCATCGCACAACCGTGAGCTCATTAGCTCGGTGCAAGGCTTCTTGGGCAGGTACCACC
AAGCCTTCTCCGCCTCGGACCCTACCCTGAGCGAACTGCCCACTTCTGCGCAGGGAGGTCCGCC
TGCCGTCTGCTACATCTGCGGGGCTGAGCTGGGGCCCGGCAAGGAGTTCCAGCTCAGCATGAAC
CCCGCCAGCCACCTGGGCGAGAAGGAACCCTTCTTTCCTTTCCTCACCGTCTATCCACCCGCCC
CACGGGCCAGGCCTGCAGACTCCACAGGCCTGGTGGCAACCTGTGTGCTCTGCTATCATGACCT
GCTGGGTCAGTGGCTACAGCACGAAGCCAGATCCGCTCACCAGGCTGTCAGCGCCTGGTCAAGG
CAGTACCAAGTGGACACGTTCGTGTGCTTCTTCTGTCAGCAAGAGAAGAAACGGTGTTTGGGGC
TGAAGTCCGTGAGAGTGGCCAGGCTACCCTTGTTCCTGTATACCCTGAGAGCCAGCCACAGCCT
GTTGGTGGATGATGGCCGGCAGCTGATCATTGGTGCCTGCGTGGAATGCGGGACCCTAGTTTGT
GCAGGCCAAGGGCTTACGAGCCCTGGACCCATGGGCTGGAGCTCCCCAGCAGCAGGAGTAACAA
AGGTTACCTCAGCTCCTCTGGAGGCACCTGCAATTGTCCATGCTCCTGCTCCAGAGCCTGAGCT
GCAGCCGGTGCCCCCCACAGACAGTCTATCCAGGGGCACCAGGACCACCCAGGAGCCGCTTCCA
GCACCAAGCCACCAGAGCAACCGAGACATCTGGGATGGGGACGGAGTAGACCTCACAGCCACAG
GCATGAGCCATGAGCCCAAGTCCCCTTCAATAGGGATGCTTTCCACGGCGACCAGGACCACCGC
CACCGTCAACCCCCTCACCCCCTCGCCACTCAATGGCGCCCTGGTGCCCACCGGTAGCCCGGCC
ACCAGCAGTGCGCTGTCGGCCCAGGCTGCGCCATCCTCCAGTTTTGCTGCCGCGCTGCGCAAGC
TCGCCAAACAGGCAGAGGAGCCCAGAGGGTCTTCACTGAGCAGCGAGTCATCTCCTGTGTCCTC
TCCAGCCACCAACCACAGCTCTCCGGCTAGCACACCCAAGCGAGTGCCCATGGGCCCCATCATC
GTTCCCCCCGGGGGTCACAGTGTTCCCAGCACTCCTCCGGTGGTCACTATTGCCCCCACCAAAA
CAGTCAATGGAGTCTGGAGGAGCGAGAGCCGCCAGGACTCCGGCTCACGAGGCGGCAGCAGCGG
TCGGGAGCGTCTGCTGGTGGAGCCGCCTCTAGCCCAGGAGAAGGCAGCGGGCCCCGCCATCCCC
TCCCATCTACTCAGCACCCCTTACCCCTTTGGCCTCTCCCCCAGCTCAGTTGTACAGGACTCCC
GCTTCCAACCACTCAACCTCCAGCGGCCTGTGCACCATGTAGTGCCCCCCAGCACGGTGACTGA
GGACTACCTGAGAAGCTTCCGGCCCTACCACACTGCTGAGGACCTACGGATGTCCTCCTTGCCT
CCACTTGGCCTGGACCCAGCCACCGCCGCGGCCTACTACCACCCCAGCTACCTGACCCCGCACC
CATTCCCGCACCCGGCCTTCAGGATGGACGACTCCTATTGCCTGTCAGCCTTAAGGTCTCCGTT
CTACCCCATCCCCACCCCGGGCTCCCTGCCTCCGCTGCACCCGTCGGCTATGCACCTGCATCTC
TCTGGCGTACGGTACCCTCCTGAGCTCTCACACTCCTCCCTGGCAGCGCTACACTCGGAGCGGA
TATCCAGCCTCAGCGCAGAGAGGTTGCAAATGGATGAGGAGCTGAGGCGGGAGAGAGAGCGGGA
GCGTGAACGGGAACGGGAGGCCGACCGAGAAAGGGAGAAGGAGCGGGAACGGGAGCAGAGGGAA
AAGGAGCGGGAGAAGGAGCTGGAGCGCGAGCGGGAGAAGGAAAGGGAGCGGGAGCTGGAGCGGC
AGCGGGAGCAACGGGCAAGGGAGAAGGAGCTGCTGGCTGCCAAGGCCTTGGAGCCCACCTTCCT
GCCTGTGGCTGAGCTGCACGGACTCCGAGGTCACACCACCGAGGAGCGGCCCAAGCCCTCAGAG
CAGCTCACTCCAACCCGAGCAGAGAAGCTGAAGGACACGGGCGTGCAGGCACCCAAGCCTGTGC
AGCACCCTCTGCACCCAGTACCTGCCCCACACCACACGGTGCCCAGCCTCATCTCCAGCCATGG
CATCTTCTCTCTGCCTGGGAGCAGTGCAGCCACGGCCCTGCTGATCCAGCGCACCAACGAGGAG
GAGAAGTGGCTGGCGCGGCAGCGGCGCCTCCGGCAGGAGAAGGAAGACCGCCAGTCCCAGGTGT
CCGAGTTCCGGCAGCAGGTCCTGGAGCAGCATCTGGACCTGGGCCGGCCCCTGGTGCCCACAGA
GGCGGAGCACAGGCCCGAGAGCACCAGGCCAGGACCAAACCGGCATGACCAGGGCAGCCGAGAA
CCCCCACAGCACTTTGGTGGCCCACCACCCCTCATCTCACCCAAGCCCCAGCACCACACCGTAC
CCACAGCCCTCTGGAACCCAGTATCTCTGATGGACAACACCCTGGAGACGCGGCGGGCCGAGAG
TCACTCTCTGCATAGCCACCCGACTGCTTTTGAGCCCAGCCGCCAGGCCGCCGTGCCACTGGTG
AAAGTGGAGCGGGTGTACTGCACAGAGAAGGCAGAGGAGCCCCGGAAGCGTGAGGCCACACCAC
TGGACAAATACCAGCCACCGCCGCCGCCGCCGCCACCACCACCACGGGAGGCAGGAGGTCTGGA
GCCTCAGACCTTTCCCCATGGGCCTGGGCCTTTCCTTGCTGAACTTGAGAAGTCAACACAGACC
ATCTTGGGCCAGCAGCGGCCTTCTCTTTCTCAAACAACCCCCTTCGGGGAGCTCACTGGGTCTC
TGAAGTCAGGCTCACCGTACTGCCACACCACAGCGAGGGGCCCTGACCCAGCATACATCTATGA
TGAGTTTCTTCAGCAGCGACGGAGGCTGGTCAGCAAGCTGGACCTGGAAGAGCGCAGGCGGCGC
GAGGCTCAGGAGAAAGGGTACTACTATGACCTCGATGACTCTTACGATGAGAGCGATGAGGAAG
AGGTCAGGGCACACCTCCGCTGTGTGGCTGAGCAGCCACCCCTCAAACTGGACACGTCCTCTGA
GAAGCTAGAGTTCTTGCAACTTTTTGGCTTGACCACCCAACAGCAGAAGGAGGAGCTGGTGGCT
CAGAAGCGCCGGAAGCGGAGGCGAATGCTGAGAGAGAGAAGCCCGTCGCCACCTGCCATTCAGT
GCAAGCGACAGACGCCTTCTCCCAGACTGGCTCTGTCCACCCGCTACAGCCCGGATGAGATGAA
CAACAGCCCTAACTTTGAGGAGAAGAGGAAGTTCCTGACCTTCTTCAACCTGACGCACATCAGT
GCAGAGAAGAGGAAAGACAAAGAGAGGCTTGTTGAAATGCTCCGTGCCATGAAGCAGAGGGCAC
TGTCCGCAGCAGTAGCAGACTCAGTGGCAACAAACTCTTCGAGGGACAGTCCTACCATCTCCCT
GAGTGAACCAGCCACACAGCCAGCTCCTTTAGAGACGGATCAGCCTGCCGGGGTCCCTGCCTCC
TTGTCAGATGTCCCAAAGGCCGTGGAGACCGGAAGACTGGAACAGCTCCGGCCCCAGGAGCTCT
TGAGAGTCCAGGAGCCAGCTCCTCCCAGCGGTGAGAAGGCCAGGCTGAGCGAGGCCCCTGGGGG
CAAGAAGAACCTGAGCATGCTTCATTACCTCCGGGGCGCTGCGCCCAAGGACATTCCTGTGCCG
TTGTCCCACAGCATCAACGGGAAGAGCAAGCCTTGGGAGCCCTTCATGGCCGAAGAGTTTGCAC
ATCAATTCCACGAGTCCGTACTGCAGTCCACACAGAAGGCTCTGCAGAAGCATAAAGGGAGCTC
GGCTTTACTATCTGCAGAGCAGAACCACAAAGTCGACACATCAGTCCACTACAACATTCCTGAG
CTGCAGTCCTCCAGCAGAGTCCCCTTGCCCCAGCACAATGGACAACAAGAGCCCCCGGCGGGGA
GGAAGGGCCCTCCTATGCAGGAGGTGGACCAGGACTCTGAGGATGACAGCGAGGAGGAAGCTGA
GGAAGCCCCCAGGCACCAGTGGCAAGGGATTGAGGCGATCTTTGAAGCTTACCAGGAACACATA
GAAGAGCAAAACCTGGAGCGGCAGGTGCTACAGACACAGTGCCGGCGGCTGGAGGCGCAGAACT
ACAGCCTCAGCCTGACTGCAGAACAGCTCTCTCACAGCATGGCGGAGCTTCGGAGTCAGAAACA
GAAGATGGTCTCTGAGCGGGAGCGGCTCCAGGCGGAGCTGGACCACTTGCGGAAGTGCCTTGCC
TTGCCCACCATGCACTGGCCTAGGGGCTACTTTAAGGGATATCCGAGGTGACGGTTTCCCTTGC
ACTAGGCTGAACCTATAGTATAGAAATATTATCTATTTTATTACCTTGAATATTTAATATTTTT
CACTGGGAGGTTTGAAGCTTACAAATTGCAAACTGAACGTGCCATGCATGAAGCGAAGGGTTCC
AGGCTCAAGAGGAGATCACCTCGACTCCATGTCATCGAGGCACCTGTCTCAGCTAAGACTCAGT
TTCTCTTTCTGAGGTCGGTGTTATTTCCTCTTCCCACATCATCCTTCTCCTCTGACACTGACGC
CCACCGTGCACATGGCTGAGGGAGAGCCAGCTGGTTGGTGGTGTTGCTGTTGCCACGGCCCCGG
GGGTTAAACCTCTTCCTCCCAGGAGCAGGACTAATGCGCTGGGAAGGCCGGGTGTGTACAAGCA
AAGGGCTCCCTCCCACCAGTCCCATCGCCTTCCTGCGCAGCCATCATCATCAAAGCCACAGGTC
CGGGGAGCACACAAGCTAGTCAAAGGCTTCTCCCTGGGACAGCTCTTAGGAAAAGAGGCAAACC
CATACCCAAAGTACCTTGTTTTCCTTGGGGAAGATACGTGGAGCTGTCCACAGAGAGCCTGCCC
ACTGGATTGCTACCGCCGTGTGGTGTTTTCATACAAACGTACGTTTTGAGAGAGAAGTCAAAGG
TGCTTCAGCCTTGTACTGTGTATATATTAAAAAAAAAAAACAAAAGTTTTGTATGTTTTTATTA
CTTTAATTATTGTTATAAAAAGCCTGCCATTTTTAATATGTGGTTTGGGGAATTTTTGTTTGTT
TTTCCTGTTTGGGGGTTTCCTTTGTTTTTTGTTTTTTTTCTGGATTTAAAAAAAAAAAAAACAA
AACCTTGCTTTTAGTGTTTGTACTGCTGCTGGTCAGAATGTTAAAACGCTGAAGTTCTAGGAAA
TAGGAGAGCTCGCCTGTGCAGCATTCCACACAGCAGGGCTAAGGGGGCACCTAGGTCTGGTCAG
CTGTCCAGGGCATGGTGACCCATGAGCAGCAGGAACTTGGCACAGCTCTGGCAGCTGAGCTCCT
GAGACAGGCACAGCTCTGGCAGAGAGCTCCACACTGGGGGATCTCCCTTCCCAGTTTCAAGTCC
TCAGTCAGGGCTGACCAACTTGAAAGAGATCCTCTTCCTGCCAGAGCCTGTGACTATCCTCCAT
CACGGGGGGGGGGGGGAGAGGAGGCAGAGCCTACCCTTGGCCACCAGGCTCAATGGCTGTACAG
AGCAGCTGCCTTGCAGTCTGTCCCCACCCTGCTCTACCCCCAACCCCTTGCTCTGCCTGCCAAG
AGTCTTCTAGACAAGGAAGTGCCACCAGTACTGTCAGCAGTCAACAAAGCACCTTCCTCTGCCT
ACAGCCAGTCAGAGATGGTCCAAAGGAGAGCAGAGGCTGCACACCCTGGGCAAAGCACTGCCCA
GTTTTCCAGTTAAGTGCTGCGTGCGCTCAGTGTTCCTTTCCCAGGCTAAGAACACACCGATGAC
TGGAAGCTTTTGCTAATCTGCTTGGCAATGGCTTCTGGGAAAGGTAGGACCCATAACTTAAGAC
ATGCACAGTCTCTCCCACCGTCCCACAGGAGTTCCCCTGGCTGAGTATACGATCCAAAGCAAGC
CATGCCCTCCCAGGTCAGTCTGGGGCACAAGCTGAGCCGATGACTAGCAATGCCTATGGCCTTT
CCCTTGCCTGCCCTCCTCCAGCATCTCCGCCTGTGGAGACCGAGTACCCCCGTGCTCATACGTA
AAGTGACAATCAGAACCAGGTACAAGCCAGGAAAGTGGCAGCTGACTGCCACTCAGACCACGTG
GCGCTTTTCCCATCCCACGGTCTCAGAGCTGGACGAGGCTAAATAGAACACAGTAGCCCCCCCT
TCCAGGTACTGCACCGTCCCTGGAGATCCCTCTGACCCTTCCCTGCTACAGATCTGCTCTGCTC
TAGGCTGGACTGTGGAATTAGCATGTACATGGAAATCCCAGTCCTTGACCATGGCTTCCCACTC
CACCTGCAAGTGATAGATGCCATCTGTCCTGGGTGTCTGATCAGACCCGCCACCATCACAGATG
AGTGACCAAGAGGGGGGCTGTCAACACCTCGGTACATGGTGATCTTAAAACCACCCAACTGCAC
CATCGCACCAGACTGTACCTCTGGGGCACCCAGAACAAGCCCCACCCTAACAGTGGGGGCCACA
GCCAGGCTTCCAGCACTGAGTCTCAACCAGCTAAGTTGAATGGCAAACTCGATGCCTCCGCCCC
CACCCCTCAGCTGCCCAGGCCCCAGCATGCAGATGGCCTGCACAGCAGGCTCAGCACCTCTGAG
GTGTGCATTAGCCACTTAACAGCAGCAGTCTGTACTCAAGTACAAAAGCTTTTACTTCACGACT
TGCCGTAGCCTGTCCCCACTGTCTGATCCAGTGCTTAACTTCAACCCTAGAGTCTGCCTTGACC
CTGAGGAGGCATCTCACTGGTTTCGTACTTGTGTGTGCCCTATGCCTCACTGCTGGGGCCGCGC
ACCCAGACCCAGCCAGGAGGGAGGATGGGTGCCTCGGTCGCTCTGGGGGCAGTTTAGATGCTGT
GAAATTAAACCCGTTCTAAGTGTACTTGTTTGAATTAACTGTATTGTAATATTATTTGTTGAAT
GTAGTAATTAGGTATTTATGAATATATTGCTGTAATTTCTGACATCCCAAAAATAAAATCTTCC
TAAATCATGTTAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001413955	(Get FASTA)	NCBI Sequence Viewer
	XP_017456938	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL92700	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000023607
	ENSRNOP00000023607.7
	ENSRNOP00000084243.1
	ENSRNOP00000087793.2
	ENSRNOP00000091424.2

RefSeq Acc Id:	XP_017456938 ⟸ XM_017601449
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AG34 (UniProtKB/TrEMBL), A0A8I6A4U2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASKARRLPREEGPAPTAGLLREACYLCGEDCTRDARAVPSRLVNGNSGGSMHFPFLSLLPCPP NARPPNKRCEVRSCPKCFSVLEDVWALYRASHNRELISSVQGFLGRYHQAFSASDPTLSELPTS AQGGPPAVCYICGAELGPGKEFQLSMNPASHLGEKEPFFPFLTVYPPAPRARPADSTGLVATCV LCYHDLLGQWLQHEARSAHQAVSAWSRQYQVDTFVCFFCQQEKKRCLGLKSVRVARLPLFLYTL RASHSLLVDDGRQLIIGACVECGTLVCAGQGLTSPGPMGWSSPAAGVTKVTSAPLEAPAIVHAP APEPELQPVPPTDSLSRGTRTTQEPLPAPSHQSNRDIWDGDGVDLTATGMSHEPKSPSIGMLST ATRTTATVNPLTPSPLNGALVPTGSPATSSALSAQAAPSSSFAAALRKLAKQAEEPRGSSLSSE SSPVSSPATNHSSPASTPKRVPMGPIIVPPGGHSVPSTPPVVTIAPTKTVNGVWRSESRQDSGS RGGSSGRERLLVEPPLAQEKAAGPAIPSHLLSTPYPFGLSPSSVVQDSRFQPLNLQRPVHHVVP PSTVTEDYLRSFRPYHTAEDLRMSSLPPLGLDPATAAAYYHPSYLTPHPFPHPAFRMDDSYCLS ALRSPFYPIPTPGSLPPLHPSAMHLHLSGVRYPPELSHSSLAALHSERISSLSAERLQMDEELR REREREREREREADREREKEREREQREKEREKELEREREKERERELERQREQRAREKELLAAKA LEPTFLPVAELHGLRGHTTEERPKPSEQLTPTRAEKLKDTGVQAPKPVQHPLHPVPAPHHTVPS LISSHGIFSLPGSSAATALLIQRTNEEEKWLARQRRLRQEKEDRQSQVSEFRQQVLEQHLDLGR PLVPTEAEHRPESTRPGPNRHDQGSREPPQHFGGPPPLISPKPQHHTVPTALWNPVSLMDNTLE TRRAESHSLHSHPTAFEPSRQAAVPLVKVERVYCTEKAEEPRKREATPLDKYQPPPPPPPPPPR EAGGLEPQTFPHGPGPFLAELEKSTQTILGQQRPSLSQTTPFGELTGSLKSGSPYCHTTARGPD PAYIYDEFLQQRRRLVSKLDLEERRRREAQEKGYYYDLDDSYDESDEEEVRAHLRCVAEQPPLK LDTSSEKLEFLQLFGLTTQQQKEELVAQKRRKRRRMLRERSPSPPAIQCKRQTPSPRLALSTRY SPDEMNNSPNFEEKRKFLTFFNLTHISAEKRKDKERLVEMLRAMKQRALSAAVADSVATNSSRD SPTISLSEPATQPAPLETDQPAGVPASLSDVPKAVETGRLEQLRPQELLRVQEPAPPSGEKARL SEAPGGKKNLSMLHYLRGAAPKDIPVPLSHSINGKSKPWEPFMAEEFAHQFHESVLQSTQKALQ KHKGSSALLSAEQNHKVDTSVHYNIPELQSSSRVPLPQHNGQQEPPAGRKGPPMQEVDQDSEDD SEEEAEEAPRHQWQGIEAIFEAYQEHIEEQNLERQVLQTQCRRLEAQNYSLSLTAEQLSHSMAE LRSQKQKMVSERERLQAELDHLRKCLALPTMHWPRGYFKGYPR hide sequence

Ensembl Acc Id:

ENSRNOP00000023607 ⟸ ENSRNOT00000023607

Ensembl Acc Id:

ENSRNOP00000087793 ⟸ ENSRNOT00000112924

Ensembl Acc Id:

ENSRNOP00000079149 ⟸ ENSRNOT00000108224

Ensembl Acc Id:

ENSRNOP00000093058 ⟸ ENSRNOT00000112263

Ensembl Acc Id:

ENSRNOP00000091424 ⟸ ENSRNOT00000094643

Ensembl Acc Id:

ENSRNOP00000084243 ⟸ ENSRNOT00000097001

RefSeq Acc Id:	NP_001413955 ⟸ NM_001427026
- UniProtKB:	A6IZM2 (UniProtKB/TrEMBL), F1M4A7 (UniProtKB/TrEMBL), A0A8I5ZMU3 (UniProtKB/TrEMBL)

Protein Domains

Genetic suppressor element-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M4A7-F1-model_v2	AlphaFold	F1M4A7	1-1106	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701195

Promoter ID:

EPDNEW_R11716

Type:

single initiation site

Name:

Gse1_1

Description:

Gse1 coiled-coil protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	54,060,694 - 54,060,754	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562686	AgrOrtholog
BioCyc Gene	G2FUF-5488	BioCyc
Ensembl Genes	ENSRNOG00000017489	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000023607	ENTREZGENE
	ENSRNOT00000023607.10	UniProtKB/TrEMBL
	ENSRNOT00000094643.2	UniProtKB/TrEMBL
	ENSRNOT00000097001.2	UniProtKB/TrEMBL
	ENSRNOT00000112924.2	UniProtKB/TrEMBL
InterPro	DUF3736	UniProtKB/TrEMBL
	GSE1	UniProtKB/TrEMBL
NCBI Gene	307913	ENTREZGENE
PANTHER	GENETIC SUPPRESSOR ELEMENT 1	UniProtKB/TrEMBL
	PTHR17608	UniProtKB/TrEMBL
Pfam	DUF3736	UniProtKB/TrEMBL
PhenoGen	Gse1	PhenoGen
PROSITE	PROKAR_LIPOPROTEIN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017489	RatGTEx
UniProt	A0A8I5ZMU3	ENTREZGENE
	A0A8I5ZXE1_RAT	UniProtKB/TrEMBL
	A0A8I6A4U2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AG34	ENTREZGENE, UniProtKB/TrEMBL
	A6IZM2	ENTREZGENE, UniProtKB/TrEMBL
	F1M4A7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-02-22	Gse1	Gse1 coiled-coil protein	Gse1	genetic suppressor element 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-29	Gse1	genetic suppressor element 1	RGD1562686_predicted	similar to genetic suppressor element 1 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1562686_predicted	similar to genetic suppressor element 1 (predicted)	LOC307913	similar to genetic suppressor element 1	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC307913	similar to genetic suppressor element 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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