Gse1 (Gse1 coiled-coil protein) - Rat Genome Database

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Gene: Gse1 (Gse1 coiled-coil protein) Ictidomys tridecemlineatus
Analyze
Symbol: Gse1
Name: Gse1 coiled-coil protein
RGD ID: 12703370
Description: ASSOCIATED WITH persistent fetal circulation syndrome (ortholog); schizophrenia (ortholog); stomach cancer (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: genetic suppressor element 1; Gse1 coiled-coil protein, transcript variant X1; Gse1 coiled-coil protein, transcript variant X2; Gse1 coiled-coil protein, transcript variant X3; Gse1 coiled-coil protein, transcript variant X4; Gse1 coiled-coil protein, transcript variant X5; Gse1 coiled-coil protein, transcript variant X6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934927,023,638 - 27,309,824 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366412,776,714 - 2,862,484 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366412,779,521 - 2,920,840 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Gse1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934927,023,638 - 27,309,824 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366412,776,714 - 2,862,484 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366412,779,521 - 2,920,840 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GSE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381685,169,512 - 85,676,200 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1685,169,525 - 85,676,204 (+)EnsemblGRCh38hg38GRCh38
GRCh371685,645,015 - 85,709,806 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361684,204,425 - 84,267,313 (+)NCBINCBI36Build 36hg18NCBI36
Celera1669,950,111 - 70,012,922 (+)NCBICelera
Cytogenetic Map16q24.1NCBI
HuRef1671,388,821 - 71,451,974 (+)NCBIHuRef
CHM1_11687,056,381 - 87,121,164 (+)NCBICHM1_1
T2T-CHM13v2.01691,235,680 - 91,741,713 (+)NCBIT2T-CHM13v2.0
Gse1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398120,955,233 - 121,308,122 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8120,955,195 - 121,308,129 (+)EnsemblGRCm39 Ensembl
GRCm388120,228,501 - 120,581,383 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8120,228,456 - 120,581,390 (+)EnsemblGRCm38mm10GRCm38
MGSCv378123,012,766 - 123,105,283 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368123,374,843 - 123,467,354 (+)NCBIMGSCv36mm8
Celera8124,703,936 - 124,797,008 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map869.69NCBI
Gse1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81965,182,678 - 65,538,183 (+)NCBIGRCr8
mRatBN7.21948,274,164 - 48,629,456 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1948,274,127 - 48,629,458 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01953,799,945 - 54,153,732 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1954,060,622 - 54,148,970 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01964,529,034 - 64,876,612 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41950,874,475 - 50,916,263 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1947,529,902 - 47,883,061 (+)NCBICelera
Cytogenetic Map19q12NCBI
Gse1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955541720,458 - 808,174 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955541517,715 - 808,174 (+)NCBIChiLan1.0ChiLan1.0
GSE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21894,921,665 - 95,423,969 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116100,838,710 - 101,341,245 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01665,838,691 - 66,340,644 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11685,178,960 - 85,680,262 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1685,617,854 - 85,680,262 (+)Ensemblpanpan1.1panPan2
GSE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1566,997,948 - 67,391,587 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl567,001,022 - 67,180,979 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha567,013,772 - 67,426,986 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0567,225,804 - 67,644,827 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl567,229,422 - 67,447,900 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1567,247,427 - 67,660,851 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0567,081,809 - 67,495,089 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0567,496,368 - 67,910,071 (-)NCBIUU_Cfam_GSD_1.0
GSE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl63,246,764 - 3,349,122 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.163,244,167 - 3,657,636 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.263,553,241 - 3,612,190 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GSE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1570,585,176 - 71,087,575 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl570,966,855 - 71,083,912 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660474,653,400 - 4,967,774 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gse1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247462,027,893 - 2,108,734 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247461,842,635 - 2,106,466 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000029518   ⟹   ENSSTOP00000016265
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366412,776,714 - 2,820,803 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000039099   ⟹   ENSSTOP00000025629
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366412,776,714 - 2,862,484 (-)Ensembl
RefSeq Acc Id: XM_005335449   ⟹   XP_005335506
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934927,023,638 - 27,109,657 (-)NCBI
SpeTri2.0NW_0049366412,779,521 - 2,863,201 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013362929   ⟹   XP_013218383
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934927,023,638 - 27,066,987 (-)NCBI
SpeTri2.0NW_0049366412,779,521 - 2,820,515 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021733372   ⟹   XP_021589047
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934927,023,638 - 27,167,292 (-)NCBI
SpeTri2.0NW_0049366412,779,521 - 2,920,840 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021733374   ⟹   XP_021589049
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934927,023,638 - 27,066,985 (-)NCBI
SpeTri2.0NW_0049366412,779,521 - 2,820,514 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040279233   ⟹   XP_040135167
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934927,023,638 - 27,309,824 (-)NCBI
RefSeq Acc Id: XM_040279234   ⟹   XP_040135168
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934927,023,638 - 27,309,824 (-)NCBI
RefSeq Acc Id: XM_040279235   ⟹   XP_040135169
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934927,023,638 - 27,309,824 (-)NCBI
RefSeq Acc Id: XM_040279236   ⟹   XP_040135170
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934927,023,638 - 27,309,823 (-)NCBI
RefSeq Acc Id: XM_040279237   ⟹   XP_040135171
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934927,023,638 - 27,109,656 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005335506   ⟸   XM_005335449
- Peptide Label: isoform X5
- UniProtKB: A0A287CWI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013218383   ⟸   XM_013362929
- Peptide Label: isoform X7
- UniProtKB: I3MVX0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021589047   ⟸   XM_021733372
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_021589049   ⟸   XM_021733374
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_040135168   ⟸   XM_040279234
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040135169   ⟸   XM_040279235
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040135167   ⟸   XM_040279233
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040135170   ⟸   XM_040279236
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040135171   ⟸   XM_040279237
- Peptide Label: isoform X8
RefSeq Acc Id: ENSSTOP00000016265   ⟸   ENSSTOT00000029518
RefSeq Acc Id: ENSSTOP00000025629   ⟸   ENSSTOT00000039099
Protein Domains
Genetic suppressor element-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023594 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029518.2 UniProtKB/TrEMBL
  ENSSTOT00000039099.1 UniProtKB/TrEMBL
InterPro GSE-like UniProtKB/TrEMBL
  GSE1 UniProtKB/TrEMBL
NCBI Gene Gse1 ENTREZGENE
PANTHER GENETIC SUPPRESSOR ELEMENT 1 UniProtKB/TrEMBL
  PTHR17608 UniProtKB/TrEMBL
Pfam DUF3736 UniProtKB/TrEMBL
UniProt A0A287CWI7 ENTREZGENE, UniProtKB/TrEMBL
  I3MVX0 ENTREZGENE, UniProtKB/TrEMBL