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Gene: Ranbp17 (RAN binding protein 17) Rattus norvegicus

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Symbol:

Ranbp17

Name:

RAN binding protein 17

RGD ID:

1562576

Description:

Predicted to enable nuclear export signal receptor activity. Predicted to be involved in protein export from nucleus. Predicted to be located in nucleus. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm. Orthologous to human RANBP17 (RAN binding protein 17); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC303029; ran-binding protein 17; RGD1562576; similar to hypothetical protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RANBP17 (RAN binding protein 17)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Ranbp17 (RAN binding protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ranbp17 (RAN binding protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RANBP17 (RAN binding protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RANBP17 (RAN binding protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ranbp17 (RAN binding protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RANBP17 (RAN binding protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RANBP17 (RAN binding protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ranbp17 (RAN binding protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ranbp17 (RAN binding protein 17)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	XPO7 (exportin 7)	HGNC	OrthoDB
Homo sapiens (human):	OMG (oligodendrocyte myelin glycoprotein)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RANBP17 (RAN binding protein 17)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ranbp17 (RAN binding protein 17)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C35A5.8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Ranbp16	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	18,304,634 - 18,607,162 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	18,305,227 - 18,607,047 (-)	Ensembl				GRCr8
mRatBN7.2	10	17,800,406 - 18,102,947 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	17,800,999 - 18,102,831 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	22,549,092 - 22,857,795 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	22,037,685 - 22,346,389 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	17,525,836 - 17,827,317 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	18,139,763 - 18,445,347 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	18,139,766 - 18,443,964 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	18,023,823 - 18,330,481 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	18,111,581 - 18,413,103 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	17,441,300 - 17,740,782 (-)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

hydrocephalus (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aldehydo-D-glucose (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

C60 fullerene (EXP)

CGP 52608 (ISO)

cisplatin (ISO)

D-glucose (ISO)

daunorubicin (ISO)

dimethylarsinic acid (EXP)

dorsomorphin (ISO)

endosulfan (EXP)

fructose (ISO)

furan (EXP)

gentamycin (EXP)

glucose (ISO)

glyphosate (EXP)

leflunomide (ISO)

methapyrilene (ISO)

mono(2-ethylhexyl) phthalate (ISO)

ozone (ISO)

paracetamol (EXP)

perfluorooctanoic acid (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

testosterone (ISO)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular protein transport (IEA)

nuclear export (IEA)

nuclear transport (IEA)

protein export from nucleus (IBA)

protein transport (IEA)

Cellular Component

cytoplasm (IBA,IEA)

nuclear pore (IBA)

nucleus (IEA)

Molecular Function

nuclear export signal receptor activity (IBA,IEA)

small GTPase binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Ranbp17
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	18,304,634 - 18,607,162 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	18,305,227 - 18,607,047 (-)	Ensembl				GRCr8
mRatBN7.2	10	17,800,406 - 18,102,947 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	17,800,999 - 18,102,831 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	22,549,092 - 22,857,795 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	22,037,685 - 22,346,389 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	17,525,836 - 17,827,317 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	18,139,763 - 18,445,347 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	18,139,766 - 18,443,964 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	18,023,823 - 18,330,481 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	18,111,581 - 18,413,103 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	17,441,300 - 17,740,782 (-)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

RANBP17
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	170,862,018 - 171,300,015 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	170,861,870 - 171,300,015 (+)	Ensembl			hg38	GRCh38
GRCh37	5	170,289,022 - 170,727,019 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	170,221,600 - 170,659,624 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	170,221,599 - 170,659,623	NCBI
Celera	5	166,321,110 - 166,759,577 (+)	NCBI		Celera
Cytogenetic Map	5	q35.1	NCBI
HuRef	5	165,386,841 - 165,824,900 (+)	NCBI		HuRef
CHM1_1	5	169,721,527 - 170,159,603 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	171,402,331 - 171,840,355 (+)	NCBI		T2T-CHM13v2.0

Ranbp17
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	33,161,794 - 33,463,789 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	33,161,795 - 33,463,746 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	33,211,794 - 33,513,784 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	33,211,795 - 33,513,746 (-)	Ensembl			mm10	GRCm38
MGSCv37	11	33,111,794 - 33,413,746 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	33,112,419 - 33,413,635 (-)	NCBI		MGSCv36	mm8
Celera	11	35,623,919 - 35,926,644 (-)	NCBI		Celera
Cytogenetic Map	11	A4	NCBI
cM Map	11	19.21	NCBI

Ranbp17
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	23,777,698 - 24,092,682 (+)	Ensembl
ChiLan1.0	NW_004955408	23,777,501 - 24,092,993 (+)	NCBI	ChiLan1.0	ChiLan1.0

RANBP17
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	166,017,542 - 166,440,272 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	164,157,093 - 164,575,563 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	166,220,228 - 166,649,006 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	172,979,949 - 173,402,987 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	172,980,121 - 173,401,395 (+)	Ensembl			panPan2	panpan1.1

RANBP17
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	40,828,393 - 41,126,981 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	40,828,395 - 41,127,268 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	40,778,918 - 41,079,709 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	41,208,134 - 41,509,345 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	41,208,137 - 41,509,291 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	41,022,717 - 41,323,476 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	41,213,065 - 41,513,833 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	41,723,475 - 42,024,572 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ranbp17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	95,059,513 - 95,343,778 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936609	3,782,193 - 4,066,266 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936609	3,880,389 - 4,065,145 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RANBP17
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	52,836,297 - 53,160,162 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	52,836,291 - 53,160,156 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	57,033,539 - 57,353,878 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RANBP17
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	73,073,889 - 73,475,803 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	73,073,871 - 73,476,689 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666034	5,176,076 - 5,599,921 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ranbp17
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	18,771,144 - 19,121,060 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624733	18,772,283 - 19,120,506 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ranbp17
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	6,039,441 - 6,328,995 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ranbp17
2721 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	423
Count of miRNA genes:	243
Interacting mature miRNAs:	290
Transcripts:	ENSRNOT00000059895
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15776754	60776754	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5893811	50893811	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5893811	50893811	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	14653541	59653541	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15533012	73695498	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6877142	51877142	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35730538	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	30004247	Rat
737823	Alc12	Alcohol consumption QTL 12	4.5		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	17749784	20796344	Rat
61332	Eau3	Experimental allergic uveoretinitis QTL 3		0.004	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	18035782	63035782	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	922197	45922197	Rat
737820	Alc9	Alcohol consumption QTL 9	2.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	15762230	19737486	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	2103708	47103708	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5893811	50893811	Rat
2298495	Eae23	Experimental allergic encephalomyelitis QTL 23	16.93		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	10	16175525	61175525	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38832698	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6661118	35509383	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	18035782	63035782	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat

Markers in Region

D10Mgh18

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	18,430,242 - 18,430,448 (+)	Marker Load Pipeline
mRatBN7.2	10	17,926,015 - 17,926,223 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	18,265,296 - 18,265,501	NCBI	Rnor6.0
Rnor_5.0	10	18,149,199 - 18,149,404	UniSTS	Rnor5.0
RGSC_v3.4	10	18,236,527 - 18,236,733	RGD	RGSC3.4
RGSC_v3.4	10	18,236,528 - 18,236,733	UniSTS	RGSC3.4
Celera	10	17,566,367 - 17,566,542	UniSTS
RGSC_v3.1	10	18,237,576 - 18,237,782	RGD
RH 2.0 Map	10	213.1	RGD
Cytogenetic Map	10	q12	UniSTS

D10Got37

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	18,044,925 - 18,045,181 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	18,384,720 - 18,384,975	NCBI	Rnor6.0
Rnor_5.0	10	18,268,471 - 18,268,726	UniSTS	Rnor5.0
RGSC_v3.4	10	18,355,093 - 18,355,349	RGD	RGSC3.4
RGSC_v3.4	10	18,355,094 - 18,355,349	UniSTS	RGSC3.4
Celera	10	17,683,958 - 17,684,213	UniSTS
RGSC_v3.1	10	18,356,142 - 18,356,398	RGD
RH 2.0 Map	10	219.5	RGD
Cytogenetic Map	10	q12	UniSTS

D10Got35

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	18,520,933 - 18,521,126 (+)	Marker Load Pipeline
mRatBN7.2	10	18,016,708 - 18,016,901 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	18,356,859 - 18,357,049	NCBI	Rnor6.0
Rnor_5.0	10	18,240,610 - 18,240,800	UniSTS	Rnor5.0
RGSC_v3.4	10	18,326,879 - 18,327,072	RGD	RGSC3.4
RGSC_v3.4	10	18,326,880 - 18,327,072	UniSTS	RGSC3.4
Celera	10	17,655,770 - 17,655,960	UniSTS
RGSC_v3.1	10	18,327,928 - 18,328,121	RGD
RH 2.0 Map	10	222.3	RGD
Cytogenetic Map	10	q12	UniSTS

D10Wox3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	17,907,113 - 17,907,293 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	18,246,394 - 18,246,573	NCBI	Rnor6.0
Rnor_5.0	10	18,130,297 - 18,130,476	UniSTS	Rnor5.0
RGSC_v3.4	10	18,217,626 - 18,217,805	UniSTS	RGSC3.4
RGSC_v3.4	10	18,217,625 - 18,217,805	RGD	RGSC3.4
Celera	10	17,547,465 - 17,547,644	UniSTS
Cytogenetic Map	10	q12	UniSTS

D10Wox2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	17,907,103 - 17,907,297 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	18,246,384 - 18,246,577	NCBI	Rnor6.0
Rnor_5.0	10	18,130,287 - 18,130,480	UniSTS	Rnor5.0
RGSC_v3.4	10	18,217,616 - 18,217,809	UniSTS	RGSC3.4
Celera	10	17,547,455 - 17,547,648	UniSTS
Cytogenetic Map	10	q12	UniSTS

RH136704

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	17,984,959 - 17,985,141 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	18,324,581 - 18,324,762	NCBI	Rnor6.0
Rnor_5.0	10	18,208,332 - 18,208,513	UniSTS	Rnor5.0
RGSC_v3.4	10	18,295,130 - 18,295,311	UniSTS	RGSC3.4
Celera	10	17,624,613 - 17,624,794	UniSTS
Cytogenetic Map	10	q12	UniSTS

RH135021

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	17,967,594 - 17,967,758 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	18,307,216 - 18,307,379	NCBI	Rnor6.0
Rnor_5.0	10	18,190,967 - 18,191,130	UniSTS	Rnor5.0
RGSC_v3.4	10	18,277,765 - 18,277,928	UniSTS	RGSC3.4
Celera	10	17,607,248 - 17,607,411	UniSTS
Cytogenetic Map	10	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	160	91	90	59	57	59	6	318	157	11	139	78	92	31	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000059895 ⟹ ENSRNOP00000056640

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	18,305,227 - 18,607,047 (-)	Ensembl
mRatBN7.2 Ensembl	10	17,800,999 - 18,102,831 (-)	Ensembl
Rnor_6.0 Ensembl	10	18,140,356 - 18,443,934 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080021 ⟹ ENSRNOP00000075380

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	18,139,766 - 18,443,964 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000141998 ⟹ ENSRNOP00000108129

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	18,305,227 - 18,607,003 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000149000 ⟹ ENSRNOP00000107583

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	18,305,227 - 18,606,628 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000153645 ⟹ ENSRNOP00000103619

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	18,305,227 - 18,606,628 (-)	Ensembl

RefSeq Acc Id:

NM_001106994 ⟹ NP_001100464

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	18,305,227 - 18,607,047 (-)	NCBI
mRatBN7.2	10	17,800,999 - 18,102,831 (-)	NCBI
Rnor_6.0	10	18,140,356 - 18,443,934 (-)	NCBI
Rnor_5.0	10	18,023,823 - 18,330,481 (-)	NCBI
RGSC_v3.4	10	18,111,581 - 18,413,103 (-)	RGD
Celera	10	17,441,300 - 17,740,782 (-)	RGD

Sequence:

show sequence

CGCGCGGCCCGCGCAGCTCTGGGAAGATGGCGCTGCACTTTCAGAGTTTGGCTGAGTTGGAAGC
TCTGTGTACTCATCTCTACGTAGGGACCGATCTCAATGAAAGAATAGAGGCTGAGAAAGCACTC
TTGGAACTGATTGACAGCCCAGAATGTCTCAGCAAGTGTCAACTTTTATTAGAACAAGGAACAA
CATCCTATGCTCAGCTCCTTGCAGCAACATGTCTTTCAAAACTTGTTACCCGAATCAATCCTTT
ACCTGTTGAACAGAGGATAGACATCAGAAACTACATTCTGAATTATGTGGCATCCCAACCTAAG
CTGGCTCCCTTCGTCATTCAAGCTCTTATTCAAGTCATTGCTAAACTCACTAAGTTGGGGTGGT
TTGAAGTTCAGAAAGACGAGTTTGTTTTCAGAGAAATCATTGCTGATGTGAAGAAATTCCTCCA
GGGCACAGTGGAGCACTGCATAATAGGGGTGATAATCCTTTCCGAACTGACACAGGAAATGAAC
CTGGTTGATTATTCCAGACCTTCAGCAAAACATAGGAAAGTAGCTACCTCATTTCGTGATACGT
CTCTAAAAGACATTCTAGTGTTAGCCTGTTCTCTCCTGAAACAGGTGTTGGCCAAACCTTTAAA
TCTTCAGGATCAAGATCAACAAAGCCTGGTGATGCAAGTCTTAAAGCTGGTCCTCAGCTGCCTG
AGCTTTGACTTCCTGGGCAGTTCAGCAGATGAGTCTGCGGACGATCTTTGCACAGTGCAGATTC
CAACAACCTGGAGAACAATTTTCCTGGAGCCAGAAACGTTGGATCTTTTCTTCAATTCGTATCA
CTCGCTTCCACCTCTGCTGTCTCAGTTAGCACTGTCATGCTTAGTTCAGTTTGCTTCTACAAGA
AGATCCTTATTTAGCAGTCCTGAACGTGCCAAGTACCTTGGTAACTTAATTAAAGGAGTAAAAA
GGATACTTGAAAACCCCCAGGGTTTGTCTGATCCTGGTAATTATCATGAATTTTGTCGATTTTT
GGCTCGTTTAAAGACAAACTATCAGCTAGGAGAATTAGTTTTGGTGAAGGAGTATGCGGAAGTT
ATCGGATTGATTGCTAATTTTACAATTACTAGCCTTCAGCATTGGGAGTTTGCCCCCAACAGTG
TTCATTACTTACTAACTCTGTGGCAGAGGATGGTAGCGTCCGTTCCCTTTGTGAAGTCAGCTGA
ACCCCACTTGTTAGACACTTATGCACCTGAAATCACAAAGGCCTTCATCACGTCCCGACTGGAA
TCTGTTGCCATTGTTGTAAGAGATAATTTAGAAGACCCCCTGGATGACACTGCTACCGTGTTCC
AGCAGCTGGAGCAGCTGTGTACAGTCAGCAGATGTGAATATGAAAAGACGTGTACTCTTCTTGT
TCAGCTATTTGACCAAAATGCACAGAACTATCAAAAGCTTCTGCATTCTGCTTCAGGGCTAGCT
ATTGACATGGCTATTCAAGAAGGTCGTCTTGCATGGCTGATATACTTAGTTGGCACAGTTGTAG
GAGGGAGATTGACGTACACCAGCACCGATGAGCATGACGCTATGGACGGAGAATTATCATGCCG
TGTTTTTCAGCTCATATCTTTAATGGATACCAGATTGCCTCGCCGCACCAACGAGAAAATAGAA
CTTGCAGTTCTCTGGTTCTTGGATCAGTTTCGTAAAACATATGTTGGCGATCAGCTTCAGAGAA
CCTCAAAGGTGTATGCCCGTATGTCAGAAGTCTTAGGAATTACAGACGACAACCATGTTCTGGA
AACATTCATGACGAAAATTGTTACAAACCTTAAGTACTGGGGAAGATGTGAGCCTGTAATCTCA
AGGACTCTTCAGTTCCTAAATGACCTTTCAGTTGGCTATATCCTTTTAAAAAAACTTGTGAAAA
TAGATGCTGTGAAATTCATGCTGAAAAACCACACGAGAGAACACTTCCCGTTTCTCGGCATCAG
TGATACTTACAGTGTGAGTGACTTCAGGTGCCGGACAACCTTCTACACAGCCCTCACTCGCCTT
CTCATGGTAGATCTGGGCGAAGATGAGGATGAATTTGAGAATTTTATGCTGCCTCTCACAGTCT
CTTTTGAAACAGTTTTACAAATATTCAACAACAACTTTAAACAGGAAGAAGTAAAGCGTATGTT
GATCGGGCTGGCAAGAGATCTTCGAGGGATTGCCTTTGCACTGAACACAAAGACCAGCTACACC
ATGCTGTTTGACTGGATGTACCCAGCGTATCTCCCAGTTCTTCAGAGAGCTATTGAACGGTGGT
ATGGAGAACCAGCATGTACTACTCCTATCTTAAAACTCTTGGCAGAACTGATGCAAAACAGGTC
CCAGCGTTTGAATTTTGATGTATCCTCTCCTAATGGAATTCTCCTCTTCAGGGAAGCCAGCAAG
ATGATCTGTACCTATGGAAATCAGATCCTGTCTCTTGGGAGTCTCTCAAAAGATCAGATTTATC
CAATGAAACTCAAGGGCATCTCCATCTGCTATTCAGCTCTCAAGTCTGCATTATGTGGAAATTA
TGTCAGCTTTGGCGTCTTCAAGTTGTATGGGGACAACCATTTTGACAATGTACTCCAGGCCTTT
GTCAAAATGCTGCTGTCGGTGTCTCACAGTGACTTGCTGCAATATCGGAAACTGAGCCAGTCGT
ACTATCCACTCCTGGAGTGTCTGACCCAGGACCACATGAGCTTCATCACCAACTTGGAGCCTCC
TGTGCTCCTATACGTGCTCACATCTCTCTCAGAGGGACTCACCACTCTTGACACAGTCGTCTCC
TCCAGCTGCTGTACGAGTCTAGACTACATGGTCACCTATCTCTTCAAGCACATAGCAAAAGAGG
GGAAGAAGCCACTTCGATGCAGAGAGGCTATGCAGGCTGGACAGAGACTGTTACATTTTATGCA
ACAAAACCCAGATGTTCTGCAGCAGATGATGTCTGTCCTCATGAACACCATTGTCTTTGAGGAC
TGTCGGAACCAGTGGTCAGTATCCAGGCCTCTCCTGGGGCTCATCCTGCTCAATGAGAAGTATT
TCAGTGAACTGAGGGCGAGTCTGATAAACAGCCAGCCTCTCCCCAAGCAGGAAGTCCTTGCCCA
GTGCTTCAGGAATTTGATGGAAGGAGTGGAGCAGAACCTGTCTGTCAAGAACAGAGACAGGTTC
ACACAGAACCTCTCCGTCTTCAGAAGAGATGTTGCAGAGGCCCTGCGCAGCGATGGCCACACTG
AACTATGCAGCCTGGACATGATGAGCTGACCCAGTCCCTGAGTGTGGGCTGTGCAGCCTTTGTT
GAGACTGCGAGGTCTGGGCTCCAGACTCCTGTGCTGGCCAGCCCAGAAGAGTGTATTTTTCAGA
ACAAGCAGCTAAAGCCCTACATTTTTATAAGTCTGAGCTAATTATAAAAATTTATGATAGTGCA
CATACAATGTAAATTCAGTATTCAGAGCAGCATATGTTGTCAGTCTATCTGGGCTCCCACAATG
CTGAAAGGTCTAGAAAGTATATTTAACCAAAGAACAAAAACCAGCTAGCACCTGCAACCACGGC
TGTGGGTTTGGTGAAGATGCAGCCCTCAGTGTGGGTCCTGGACCAAGACAAATGCCATTGTTGA
TTTTAGTTTTTACATCTGGAAAATGCTACATTAGGGACTCAGGGCTGTGGGCATTGACAAGGAG
CCTGGGGGGGGAGGGCCATAAAAGCCTCCCCAGAACTGCACACAGGCCTTTCTGCCACAGCAGT
ATCTGATAAAGTTCAGAGACAGTAACACAATTAGATGACTTACAAACAATGTTTGCTTTCCACT
GGAATAAATCTGAAGTGGTTCCGTCTAGAAGAATTAGCCCTGCAATTGCTGCCCGCAGAGAGCT
GTGTTTAGGACTCTGGAAGCCTGGTTAGAAGTTCTAGGTGCGCAAGCTCCATTTAACCTGAAGA
AAAGCCGGAGGCGGCAAGTTGTGTTTGGAGGCGGCTCTGCCTCCTTGGACCCCCAGAAGAGCTC
AACTGCTGCCTTCCACCTTCCTCAGGCTTAACCACTGTCGGATGACCCCACCCAAACCCAAAGT
GAAGGTCTTCACAGTTTGTGGCCCATCAAACCTAAGCTATTCATTTGGAATCGCCACTGTCAAG
CTGGTTTCCTATCTCACTACGCTGACTTTGTCGTTCAGGCTTACAATAAACACTGCGCCCATAA
TGTCTGATCAG

hide sequence

RefSeq Acc Id:

XM_008767582 ⟹ XP_008765804

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	18,304,634 - 18,607,160 (-)	NCBI
mRatBN7.2	10	17,800,406 - 18,102,947 (-)	NCBI
Rnor_6.0	10	18,139,763 - 18,445,347 (-)	NCBI

Sequence:

show sequence

AAAAAAAGAAAAAAATGTTGGTCAATATTATTCAAAGACTGATGAAAATGTCAAATCACAGGAG
AAAAACTATTAATTTCAAGGATGAATATCACATATAGACTTAGTGACAATCAAACTCAATCTGG
TTAAGAACAAAGAGAAAGAAAAAAAACTTCAAGTATTCTAGAGCATATTATCTAAAGGTGCAAT
ATAATCAAGATTGATGGCTGTCTCCTCAACTGAAACAATGGCAACCAGAATGACAACCAACAAT
GGAAGATCATCTTTAAAGTATCAAAAGCTAAAAACAAAACAAAACAAAAGGCAAACATGGAATT
TTATACCCAGCAAAACTACCTTTAAAATTGATGCAATAAAGATGCTTTCAAATCGACAAATTTG
AGAGGATTTGTTAATATACTTAAGTTGTAAGAAACATTTAAGGAAAATTCCCCTTAAACACAAA
AGACAAAGTCCTTCAAATGGAAGTGTTGCCCTCTGAAGAAATGAAAAACACTAGGAATGAGCGA
TTCTGATCCTATATCTGCTCTATAACCCCTATTCCAATGAAATATTTTGGCGTAAAATATAGGT
TCATATAAAAGTGTAGATAAGGAGTTACAGGCAAGCCAGAATTTTACAATTTAATGCCCCCCAC
ACAATGGCAGCTTAACTTAAACTCAATAAAGTTAAAAAAAAAAAACAATGGGAGTTAGGCATTG
GGGAACAGGAATTAAGCATAGCAGCTGCATATGGGGGTCAAAAGTTGTTGGTGTGTTAGAGGAT
TAAACATCTGTGCAGATGTGGGATTTGGCAGCTATGAATTTGTTTCAGAGTCCCGTCAGGAATC
AAGATAGCTTGTGGTAGCATTAAGGTTTATTATCATGTGTATAAAAGGGATGCAGGTGCCTGCT
AAAGCAGTTAGATCTCCACAAGCTGGAGCTACAAGCAGTTGTGAGCACGTGGGTGGGTGCTCTC
CACTGCTGAGCCATCTCTTCGCCTGTCTACCATAGATTTAGGAGCCAAAGTGGGCAGTAGCACA
CACAGGCCGCACGCAGATGACGATGACTGCATGTTCGAGACCAGCCTGGTTCACATATTAAAGG
CTTGGCAGGAATTCATAGTGAGACCCAGTCTTCAAAAACTAAGTCGGCGGTCTAGGCGGGCAGT
TGGGTCATGGTGGTGGGTTAAAAGTTAAAGGTCAGAGGTCAGAGGCTTGCTCTGAGGAGTCAGC
GGTTGCAAAAGAAGCGCACTGGCGGTTGGGCGGAGGAGCCCGAAGGACACGCCCCCTCCGCCCC
GCCGGCCCCGCCCAGTCCCGCTGCCGGCTCCAAGCGGAGCGCGCCGAGCATAGGGAGCGAGCGG
TGTGGGGGGGATCCCGCGGCGGAGGGGCTCGCGCGGCGTCTTCGCTCCCCCTCCCCTCAGCCCT
CGGGCCGCGCGGCCCGCGCAGCTCTGGGAAGATGGCGCTGCACTTTCAGAGTTTGGCTGAGTTG
GAAGCTCTGTGTACTCATCTCTACGTAGGGACCGATCTCAATGAAAGAATAGAGGCTGAGAAAG
CACTCTTGGAACTGATTGACAGCCCAGAATGTCTCAGCAAGTGTCAACTTTTATTAGAACAAGG
AACAACATCCTATGCTCAGCTCCTTGCAGCAACATGTCTTTCAAAACTTGTTACCCGAATCAAT
CCTTTACCTGTTGAACAGAGGATAGACATCAGAAACTACATTCTGAATTATGTGGCATCCCAAC
CTAAGCTGGCTCCCTTCGTCATTCAAGCTCTTATTCAAGTCATTGCTAAACTCACTAAGTTGGG
GTGGTTTGAAGTTCAGAAAGACGAGTTTGTTTTCAGAGAAATCATTGCTGATGTGAAGAAATTC
CTCCAGGGCACAGTGGAGCACTGCATAATAGGGGTGATAATCCTTTCCGAACTGACACAGGAAA
TGAACCTGGTTGATTATTCCAGACCTTCAGCAAAACATAGGAAAGTAGCTACCTCATTTCGTGA
TACGTCTCTAAAAGACATTCTAGTGTTAGCCTGTTCTCTCCTGAAACAGGTGTTGGCCAAACCT
TTAAATCTTCAGGATCAAGATCAACAAAGCCTGGTGATGCAAGTCTTAAAGCTGGTCCTCAGCT
GCCTGAGCTTTGACTTCCTGGGCAGTTCAGCAGATGAGTCTGCGGACGATCTTTGCACAGTGCA
GATTCCAACAACCTGGAGAACAATTTTCCTGGAGCCAGAAACGTTGGATCTTTTCTTCAATTCG
TATCACTCGCTTCCACCTCTGCTGTCTCAGTTAGCACTGTCATGCTTAGTTCAGTTTGCTTCTA
CAAGAAGATCCTTATTTAGCAGTCCTGAACGTGCCAAGTACCTTGGTAACTTAATTAAAGGAGT
AAAAAGGATACTTGAAAACCCCCAGGGTTTGTCTGATCCTGGTAATTATCATGAATTTTGTCGA
TTTTTGGCTCGTTTAAAGACAAACTATCAGCTAGGAGAATTAGTTTTGGTGAAGGAGTATGCGG
AAGTTATCGGATTGATTGCTAATTTTACAATTACTAGCCTTCAGCATTGGGAGTTTGCCCCCAA
CAGTGTTCATTACTTACTAACTCTGTGGCAGAGGATGGTAGCGTCCGTTCCCTTTGTGAAGTCA
GCTGAACCCCACTTGTTAGACACTTATGCACCTGAAATCACAAAGGCCTTCATCACGTCCCGAC
TGGAATCTGTTGCCATTGTTGTAAGAGATAATTTAGAAGACCCCCTGGATGACACTGCTACCGT
GTTCCAGCAGCTGGAGCAGCTGTGTACAGTCAGCAGATGTGAATATGAAAAGACGTGTACTCTT
CTTGTTCAGCTATTTGACCAAAATGCACAGAACTATCAAAAGCTTCTGCATTCTGCTTCAGGGC
TAGCTATTGACATGGCTATTCAAGAAGGTCGTCTTGCATGGCTGATATACTTAGTTGGCACAGT
TGTAGGAGGGAGATTGACGTACACCAGCACCGATGAGCATGACGCTATGGACGGAGAATTATCA
TGCCGTGTTTTTCAGCTCATATCTTTAATGGATACCAGATTGCCTCGCCGCACCAACGAGAAAA
TAGAACTTGCAGTTCTCTGGTTCTTGGATCAGTTTCGTAAAACATATGTTGGCGATCAGCTTCA
GAGAACCTCAAAGGTTGTACGCCCGAAGAATGATGTTTCCAGAGTTCCAGAGAAGGCTTGGAAA
ATAGTTAAGGTGTATGCCCGTATGTCAGAAGTCTTAGGAATTACAGACGACAACCATGTTCTGG
AAACATTCATGACGAAAATTGTTACAAACCTTAAGTACTGGGGAAGATGTGAGCCTGTAATCTC
AAGGACTCTTCAGTTCCTAAATGACCTTTCAGTTGGCTATATCCTTTTAAAAAAACTTGTGAAA
ATAGATGCTGTGAAATTCATGCTGAAAAACCACACGAGAGAACACTTCCCGTTTCTCGGCATCA
GTGATACTTACAGTGTGAGTGACTTCAGGTGCCGGACAACCTTCTACACAGCCCTCACTCGCCT
TCTCATGGTAGATCTGGGCGAAGATGAGGATGAATTTGAGAATTTTATGCTGCCTCTCACAGTC
TCTTTTGAAACAGTTTTACAAATATTCAACAACAACTTTAAACAGGAAGAAGTAAAGCGTATGT
TGATCGGGCTGGCAAGAGATCTTCGAGGGATTGCCTTTGCACTGAACACAAAGACCAGCTACAC
CATGCTGTTTGACTGGATGTACCCAGCGTATCTCCCAGTTCTTCAGAGAGCTATTGAACGGTGG
TATGGAGAACCAGCATGTACTACTCCTATCTTAAAACTCTTGGCAGAACTGATGCAAAACAGGT
CCCAGCGTTTGAATTTTGATGTATCCTCTCCTAATGGAATTCTCCTCTTCAGGGAAGCCAGCAA
GATGATCTGTACCTATGGAAATCAGATCCTGTCTCTTGGGAGTCTCTCAAAAGATCAGATTTAT
CCAATGAAACTCAAGGGCATCTCCATCTGCTATTCAGCTCTCAAGTCTGCATTATGTGGAAATT
ATGTCAGCTTTGGCGTCTTCAAGTTGTATGGGGACAACCATTTTGACAATGTACTCCAGGCCTT
TGTCAAAATGCTGCTGTCGGTGTCTCACAGTGACTTGCTGCAATATCGGAAACTGAGCCAGTCG
TACTATCCACTCCTGGAGTGTCTGACCCAGGACCACATGAGCTTCATCACCAACTTGGAGCCTC
CTGTGCTCCTATACGTGCTCACATCTCTCTCAGAGGGACTCACCACTCTTGACACAGTCGTCTC
CTCCAGCTGCTGTACGAGTCTAGACTACATGGTCACCTATCTCTTCAAGCACATAGCAAAAGAG
GGGAAGAAGCCACTTCGATGCAGAGAGGCTATGCAGGCTGGACAGAGACTGTTACATTTTATGC
AACAAAACCCAGATGTTCTGCAGCAGATGATGTCTGTCCTCATGAACACCATTGTCTTTGAGGA
CTGTCGGAACCAGTGGTCAGTATCCAGGCCTCTCCTGGGGCTCATCCTGCTCAATGAGAAGTAT
TTCAGTGAACTGAGGGCGAGTCTGATAAACAGCCAGCCTCTCCCCAAGCAGGAAGTCCTTGCCC
AGTGCTTCAGGAATTTGATGGAAGGAGTGGAGCAGAACCTGTCTGTCAAGAACAGAGACAGGTT
CACACAGAACCTCTCCGTCTTCAGAAGAGATGTTGCAGAGGCCCTGCGCAGCGATGGCCACACT
GAACTATGCAGCCTGGACATGATGAGCTGACCCAGTCCCTGAGTGTGGGCTGTGCAGCCTTTGT
TGAGACTGCGAGGTCTGGGCTCCAGACTCCTGTGCTGGCCAGCCCAGAAGAGTGTATTTTTCAG
AACAAGCAGCTAAAGCCCTACATTTTTATAAGTCTGAGCTAATTATAAAAATTTATGATAGTGC
ACATACAATGTAAATTCAGTATTCAGAGCAGCATATGTTGTCAGTCTATCTGGGCTCCCACAAT
GCTGAAAGGTCTAGAAAGTATATTTAACCAAAGAACAAAAACCAGCTAGCACCTGCAACCACGG
CTGTGGGTTTGGTGAAGATGCAGCCCTCAGTGTGGGTCCTGGACCAAGACAAATGCCATTGTTG
ATTTTAGTTTTTACATCTGGAAAATGCTACATTAGGGACTCAGGGCTGTGGGCATTGACAAGGA
GCCTGGGGGGGGAGGGCCATAAAAGCCTCCCCAGAACTGCACACAGGCCTTTCTGCCACAGCAG
TATCTGATAAAGTTCAGAGACAGTAACACAATTAGATGACTTACAAACAATGTTTGCTTTCCAC
TGGAATAAATCTGAAGTGGTTCCGTCTAGAAGAATTAGCCCTGCAATTGCTGCCCGCAGAGAGC
TGTGTTTAGGACTCTGGAAGCCTGGTTAGAAGTTCTAGGTGCGCAAGCTCCATTTAACCTGAAG
AAAAGCCGGAGGCGGCAAGTTGTGTTTGGAGGCGGCTCTGCCTCCTTGGACCCCCAGAAGAGCT
CAACTGCTGCCTTCCACCTTCCTCAGGCTTAACCACTGTCGGATGACCCCACCCAAACCCAAAG
TGAAGGTCTTCACAGTTTGTGGCCCATCAAACCTAAGCTATTCATTTGGAATCGCCACTGTCAA
GCTGGTTTCCTATCTCACTACGCTGACTTTGTCGTTCAGGCTTACAATAAACACTGCGCCCATA
ATGTCTGATCAGACGTGAAAGGTTGGCCTCACTGTTGCAGGGGAAAATCCACAGGCTTTTGTTG
TAATCTCATTTCTCAGACTAGTGTTTCTTCAAACCTTTCTTGATAGTTGAGTTTTGCAACAGTC
TTGTTGTATGAAAGCAAATCACCTGAGTCATCTCCAAGTGTTTGTTTTCCGTGTGCAAAGGGAG
TCAGGGGACACAGTGGTCTGGATGAGACAGCTTGTGGTGGTTAACAGGCAGGCAAGCCTGAACC
TTAGGAAATAGAACTCTCCTATAGAAGACAAATCCTGACTTTGAAATGTCAGCTTTCAAAGGAA
CTTGACAAGAATTTCTCTTTGGTTTTTGTTTAGTTTTTAATTTGTTTGGTTTTGGTTTTCTGAG
CCTCCCTATGTAGCCCAGGCTGGCCTGGAACTCACTGTGATATTTCCACAGCCTCCTCAGTGAA
GGTTGACAGGCATCGGCTTCTGCAGTTAGGGGCAGGGTGGTATAGCTGCCCTCACTCACAGAGC
TGCACATGTTCCCCCCTCCAGCACTGTTTCTTCCCAGATGCCTAGAGTTGAAAGCACTATACTG
TTTGCATTAAAATGTTCACAGGAAAAGAA

hide sequence

RefSeq Acc Id:

XM_017597247 ⟹ XP_017452736

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	18,304,634 - 18,603,152 (-)	NCBI
mRatBN7.2	10	17,800,406 - 18,097,211 (-)	NCBI
Rnor_6.0	10	18,139,763 - 18,438,244 (-)	NCBI

Sequence:

show sequence

TTGATTCCTAGCACTCACATGATGGCTAACAAGTGTCTGTCTCCAGTTGCAGGGGTCCAAACCT
TCTTCTGGAGGCAGTGCAACATGTGCTGCAAGGGTGGACATGCAAGTAAACACCATGTGCATAA
AGATAAATGAGTTTGGCTGAGTTGGAAGCTCTGTGTACTCATCTCTACGTAGGGACCGATCTCA
ATGAAAGAATAGAGGCTGAGAAAGCACTCTTGGAACTGATTGACAGCCCAGAATGTCTCAGCAA
GTGTCAACTTTTATTAGAACAAGGAACAACATCCTATGCTCAGCTCCTTGCAGCAACATGTCTT
TCAAAACTTGTTACCCGAATCAATCCTTTACCTGTTGAACAGAGGATAGACATCAGAAACTACA
TTCTGAATTATGTGGCATCCCAACCTAAGCTGGCTCCCTTCGTCATTCAAGCTCTTATTCAAGT
CATTGCTAAACTCACTAAGTTGGGGTGGTTTGAAGTTCAGAAAGACGAGTTTGTTTTCAGAGAA
ATCATTGCTGATGTGAAGAAATTCCTCCAGGGCACAGTGGAGCACTGCATAATAGGGGTGATAA
TCCTTTCCGAACTGACACAGGAAATGAACCTGGTTGATTATTCCAGACCTTCAGCAAAACATAG
GAAAGTAGCTACCTCATTTCGTGATACGTCTCTAAAAGACATTCTAGTGTTAGCCTGTTCTCTC
CTGAAACAGGTGTTGGCCAAACCTTTAAATCTTCAGGATCAAGATCAACAAAGCCTGGTGATGC
AAGTCTTAAAGCTGGTCCTCAGCTGCCTGAGCTTTGACTTCCTGGGCAGTTCAGCAGATGAGTC
TGCGGACGATCTTTGCACAGTGCAGATTCCAACAACCTGGAGAACAATTTTCCTGGAGCCAGAA
ACGTTGGATCTTTTCTTCAATTCGTATCACTCGCTTCCACCTCTGCTGTCTCAGTTAGCACTGT
CATGCTTAGTTCAGTTTGCTTCTACAAGAAGATCCTTATTTAGCAGTCCTGAACGTGCCAAGTA
CCTTGGTAACTTAATTAAAGGAGTAAAAAGGATACTTGAAAACCCCCAGGGTTTGTCTGATCCT
GGTAATTATCATGAATTTTGTCGATTTTTGGCTCGTTTAAAGACAAACTATCAGCTAGGAGAAT
TAGTTTTGGTGAAGGAGTATGCGGAAGTTATCGGATTGATTGCTAATTTTACAATTACTAGCCT
TCAGCATTGGGAGTTTGCCCCCAACAGTGTTCATTACTTACTAACTCTGTGGCAGAGGATGGTA
GCGTCCGTTCCCTTTGTGAAGTCAGCTGAACCCCACTTGTTAGACACTTATGCACCTGAAATCA
CAAAGGCCTTCATCACGTCCCGACTGGAATCTGTTGCCATTGTTGTAAGAGATAATTTAGAAGA
CCCCCTGGATGACACTGCTACCGTGTTCCAGCAGCTGGAGCAGCTGTGTACAGTCAGCAGATGT
GAATATGAAAAGACGTGTACTCTTCTTGTTCAGCTATTTGACCAAAATGCACAGAACTATCAAA
AGCTTCTGCATTCTGCTTCAGGGCTAGCTATTGACATGGCTATTCAAGAAGGTCGTCTTGCATG
GCTGATATACTTAGTTGGCACAGTTGTAGGAGGGAGATTGACGTACACCAGCACCGATGAGCAT
GACGCTATGGACGGAGAATTATCATGCCGTGTTTTTCAGCTCATATCTTTAATGGATACCAGAT
TGCCTCGCCGCACCAACGAGAAAATAGAACTTGCAGTTCTCTGGTTCTTGGATCAGTTTCGTAA
AACATATGTTGGCGATCAGCTTCAGAGAACCTCAAAGGTTGTACGCCCGAAGAATGATGTTTCC
AGAGTTCCAGAGAAGGCTTGGAAAATAGTTAAGGTGTATGCCCGTATGTCAGAAGTCTTAGGAA
TTACAGACGACAACCATGTTCTGGAAACATTCATGACGAAAATTGTTACAAACCTTAAGTACTG
GGGAAGATGTGAGCCTGTAATCTCAAGGACTCTTCAGTTCCTAAATGACCTTTCAGTTGGCTAT
ATCCTTTTAAAAAAACTTGTGAAAATAGATGCTGTGAAATTCATGCTGAAAAACCACACGAGAG
AACACTTCCCGTTTCTCGGCATCAGTGATACTTACAGTGTGAGTGACTTCAGGTGCCGGACAAC
CTTCTACACAGCCCTCACTCGCCTTCTCATGGTAGATCTGGGCGAAGATGAGGATGAATTTGAG
AATTTTATGCTGCCTCTCACAGTCTCTTTTGAAACAGTTTTACAAATATTCAACAACAACTTTA
AACAGGAAGAAGTAAAGCGTATGTTGATCGGGCTGGCAAGAGATCTTCGAGGGATTGCCTTTGC
ACTGAACACAAAGACCAGCTACACCATGCTGTTTGACTGGATGTACCCAGCGTATCTCCCAGTT
CTTCAGAGAGCTATTGAACGGTGGTATGGAGAACCAGCATGTACTACTCCTATCTTAAAACTCT
TGGCAGAACTGATGCAAAACAGGTCCCAGCGTTTGAATTTTGATGTATCCTCTCCTAATGGAAT
TCTCCTCTTCAGGGAAGCCAGCAAGATGATCTGTACCTATGGAAATCAGATCCTGTCTCTTGGG
AGTCTCTCAAAAGATCAGATTTATCCAATGAAACTCAAGGGCATCTCCATCTGCTATTCAGCTC
TCAAGTCTGCATTATGTGGAAATTATGTCAGCTTTGGCGTCTTCAAGTTGTATGGGGACAACCA
TTTTGACAATGTACTCCAGGCCTTTGTCAAAATGCTGCTGTCGGTGTCTCACAGTGACTTGCTG
CAATATCGGAAACTGAGCCAGTCGTACTATCCACTCCTGGAGTGTCTGACCCAGGACCACATGA
GCTTCATCACCAACTTGGAGCCTCCTGTGCTCCTATACGTGCTCACATCTCTCTCAGAGGGACT
CACCACTCTTGACACAGTCGTCTCCTCCAGCTGCTGTACGAGTCTAGACTACATGGTCACCTAT
CTCTTCAAGCACATAGCAAAAGAGGGGAAGAAGCCACTTCGATGCAGAGAGGCTATGCAGGCTG
GACAGAGACTGTTACATTTTATGCAACAAAACCCAGATGTTCTGCAGCAGATGATGTCTGTCCT
CATGAACACCATTGTCTTTGAGGACTGTCGGAACCAGTGGTCAGTATCCAGGCCTCTCCTGGGG
CTCATCCTGCTCAATGAGAAGTATTTCAGTGAACTGAGGGCGAGTCTGATAAACAGCCAGCCTC
TCCCCAAGCAGGAAGTCCTTGCCCAGTGCTTCAGGAATTTGATGGAAGGAGTGGAGCAGAACCT
GTCTGTCAAGAACAGAGACAGGTTCACACAGAACCTCTCCGTCTTCAGAAGAGATGTTGCAGAG
GCCCTGCGCAGCGATGGCCACACTGAACTATGCAGCCTGGACATGATGAGCTGACCCAGTCCCT
GAGTGTGGGCTGTGCAGCCTTTGTTGAGACTGCGAGGTCTGGGCTCCAGACTCCTGTGCTGGCC
AGCCCAGAAGAGTGTATTTTTCAGAACAAGCAGCTAAAGCCCTACATTTTTATAAGTCTGAGCT
AATTATAAAAATTTATGATAGTGCACATACAATGTAAATTCAGTATTCAGAGCAGCATATGTTG
TCAGTCTATCTGGGCTCCCACAATGCTGAAAGGTCTAGAAAGTATATTTAACCAAAGAACAAAA
ACCAGCTAGCACCTGCAACCACGGCTGTGGGTTTGGTGAAGATGCAGCCCTCAGTGTGGGTCCT
GGACCAAGACAAATGCCATTGTTGATTTTAGTTTTTACATCTGGAAAATGCTACATTAGGGACT
CAGGGCTGTGGGCATTGACAAGGAGCCTGGGGGGGGAGGGCCATAAAAGCCTCCCCAGAACTGC
ACACAGGCCTTTCTGCCACAGCAGTATCTGATAAAGTTCAGAGACAGTAACACAATTAGATGAC
TTACAAACAATGTTTGCTTTCCACTGGAATAAATCTGAAGTGGTTCCGTCTAGAAGAATTAGCC
CTGCAATTGCTGCCCGCAGAGAGCTGTGTTTAGGACTCTGGAAGCCTGGTTAGAAGTTCTAGGT
GCGCAAGCTCCATTTAACCTGAAGAAAAGCCGGAGGCGGCAAGTTGTGTTTGGAGGCGGCTCTG
CCTCCTTGGACCCCCAGAAGAGCTCAACTGCTGCCTTCCACCTTCCTCAGGCTTAACCACTGTC
GGATGACCCCACCCAAACCCAAAGTGAAGGTCTTCACAGTTTGTGGCCCATCAAACCTAAGCTA
TTCATTTGGAATCGCCACTGTCAAGCTGGTTTCCTATCTCACTACGCTGACTTTGTCGTTCAGG
CTTACAATAAACACTGCGCCCATAATGTCTGATCAGACGTGAAAGGTTGGCCTCACTGTTGCAG
GGGAAAATCCACAGGCTTTTGTTGTAATCTCATTTCTCAGACTAGTGTTTCTTCAAACCTTTCT
TGATAGTTGAGTTTTGCAACAGTCTTGTTGTATGAAAGCAAATCACCTGAGTCATCTCCAAGTG
TTTGTTTTCCGTGTGCAAAGGGAGTCAGGGGACACAGTGGTCTGGATGAGACAGCTTGTGGTGG
TTAACAGGCAGGCAAGCCTGAACCTTAGGAAATAGAACTCTCCTATAGAAGACAAATCCTGACT
TTGAAATGTCAGCTTTCAAAGGAACTTGACAAGAATTTCTCTTTGGTTTTTGTTTAGTTTTTAA
TTTGTTTGGTTTTGGTTTTCTGAGCCTCCCTATGTAGCCCAGGCTGGCCTGGAACTCACTGTGA
TATTTCCACAGCCTCCTCAGTGAAGGTTGACAGGCATCGGCTTCTGCAGTTAGGGGCAGGGTGG
TATAGCTGCCCTCACTCACAGAGCTGCACATGTTCCCCCCTCCAGCACTGTTTCTTCCCAGATG
CCTAGAGTTGAAAGCACTATACTGTTTGCATTAAAATGTTCACAGGAAAAGAA

hide sequence

RefSeq Acc Id:

XM_039085897 ⟹ XP_038941825

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	18,304,634 - 18,563,538 (-)	NCBI
mRatBN7.2	10	17,800,406 - 18,059,304 (-)	NCBI

RefSeq Acc Id:

XM_063268959 ⟹ XP_063125029

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	18,304,634 - 18,607,160 (-)	NCBI

RefSeq Acc Id:

XM_063268960 ⟹ XP_063125030

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	18,304,634 - 18,607,162 (-)	NCBI

RefSeq Acc Id:

XM_063268961 ⟹ XP_063125031

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	18,304,634 - 18,607,117 (-)	NCBI

RefSeq Acc Id:

XR_010055171

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	18,389,011 - 18,607,162 (-)	NCBI

RefSeq Acc Id:

XR_010055172

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	18,389,011 - 18,607,162 (-)	NCBI

RefSeq Acc Id:

XR_010055173

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	18,491,026 - 18,607,161 (-)	NCBI

RefSeq Acc Id:

XR_010055174

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	18,471,762 - 18,607,161 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100464	(Get FASTA)	NCBI Sequence Viewer
	NP_001427017	(Get FASTA)	NCBI Sequence Viewer
	XP_008765804	(Get FASTA)	NCBI Sequence Viewer
	XP_017452736	(Get FASTA)	NCBI Sequence Viewer
	XP_038941825	(Get FASTA)	NCBI Sequence Viewer
	XP_063125029	(Get FASTA)	NCBI Sequence Viewer
	XP_063125030	(Get FASTA)	NCBI Sequence Viewer
	XP_063125031	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM04072	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000056640
	ENSRNOP00000056640.3
	ENSRNOP00000103619.1
	ENSRNOP00000107583.1
	ENSRNOP00000108129
	ENSRNOP00000108129.1

RefSeq Acc Id:

NP_001100464 ⟸ NM_001106994

- UniProtKB:

D3ZYN8 (UniProtKB/TrEMBL), A6HDG6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MALHFQSLAELEALCTHLYVGTDLNERIEAEKALLELIDSPECLSKCQLLLEQGTTSYAQLLAA
TCLSKLVTRINPLPVEQRIDIRNYILNYVASQPKLAPFVIQALIQVIAKLTKLGWFEVQKDEFV
FREIIADVKKFLQGTVEHCIIGVIILSELTQEMNLVDYSRPSAKHRKVATSFRDTSLKDILVLA
CSLLKQVLAKPLNLQDQDQQSLVMQVLKLVLSCLSFDFLGSSADESADDLCTVQIPTTWRTIFL
EPETLDLFFNSYHSLPPLLSQLALSCLVQFASTRRSLFSSPERAKYLGNLIKGVKRILENPQGL
SDPGNYHEFCRFLARLKTNYQLGELVLVKEYAEVIGLIANFTITSLQHWEFAPNSVHYLLTLWQ
RMVASVPFVKSAEPHLLDTYAPEITKAFITSRLESVAIVVRDNLEDPLDDTATVFQQLEQLCTV
SRCEYEKTCTLLVQLFDQNAQNYQKLLHSASGLAIDMAIQEGRLAWLIYLVGTVVGGRLTYTST
DEHDAMDGELSCRVFQLISLMDTRLPRRTNEKIELAVLWFLDQFRKTYVGDQLQRTSKVYARMS
EVLGITDDNHVLETFMTKIVTNLKYWGRCEPVISRTLQFLNDLSVGYILLKKLVKIDAVKFMLK
NHTREHFPFLGISDTYSVSDFRCRTTFYTALTRLLMVDLGEDEDEFENFMLPLTVSFETVLQIF
NNNFKQEEVKRMLIGLARDLRGIAFALNTKTSYTMLFDWMYPAYLPVLQRAIERWYGEPACTTP
ILKLLAELMQNRSQRLNFDVSSPNGILLFREASKMICTYGNQILSLGSLSKDQIYPMKLKGISI
CYSALKSALCGNYVSFGVFKLYGDNHFDNVLQAFVKMLLSVSHSDLLQYRKLSQSYYPLLECLT
QDHMSFITNLEPPVLLYVLTSLSEGLTTLDTVVSSSCCTSLDYMVTYLFKHIAKEGKKPLRCRE
AMQAGQRLLHFMQQNPDVLQQMMSVLMNTIVFEDCRNQWSVSRPLLGLILLNEKYFSELRASLI
NSQPLPKQEVLAQCFRNLMEGVEQNLSVKNRDRFTQNLSVFRRDVAEALRSDGHTELCSLDMMS

hide sequence

RefSeq Acc Id:	XP_008765804 ⟸ XM_008767582
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2KAF6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALHFQSLAELEALCTHLYVGTDLNERIEAEKALLELIDSPECLSKCQLLLEQGTTSYAQLLAA TCLSKLVTRINPLPVEQRIDIRNYILNYVASQPKLAPFVIQALIQVIAKLTKLGWFEVQKDEFV FREIIADVKKFLQGTVEHCIIGVIILSELTQEMNLVDYSRPSAKHRKVATSFRDTSLKDILVLA CSLLKQVLAKPLNLQDQDQQSLVMQVLKLVLSCLSFDFLGSSADESADDLCTVQIPTTWRTIFL EPETLDLFFNSYHSLPPLLSQLALSCLVQFASTRRSLFSSPERAKYLGNLIKGVKRILENPQGL SDPGNYHEFCRFLARLKTNYQLGELVLVKEYAEVIGLIANFTITSLQHWEFAPNSVHYLLTLWQ RMVASVPFVKSAEPHLLDTYAPEITKAFITSRLESVAIVVRDNLEDPLDDTATVFQQLEQLCTV SRCEYEKTCTLLVQLFDQNAQNYQKLLHSASGLAIDMAIQEGRLAWLIYLVGTVVGGRLTYTST DEHDAMDGELSCRVFQLISLMDTRLPRRTNEKIELAVLWFLDQFRKTYVGDQLQRTSKVVRPKN DVSRVPEKAWKIVKVYARMSEVLGITDDNHVLETFMTKIVTNLKYWGRCEPVISRTLQFLNDLS VGYILLKKLVKIDAVKFMLKNHTREHFPFLGISDTYSVSDFRCRTTFYTALTRLLMVDLGEDED EFENFMLPLTVSFETVLQIFNNNFKQEEVKRMLIGLARDLRGIAFALNTKTSYTMLFDWMYPAY LPVLQRAIERWYGEPACTTPILKLLAELMQNRSQRLNFDVSSPNGILLFREASKMICTYGNQIL SLGSLSKDQIYPMKLKGISICYSALKSALCGNYVSFGVFKLYGDNHFDNVLQAFVKMLLSVSHS DLLQYRKLSQSYYPLLECLTQDHMSFITNLEPPVLLYVLTSLSEGLTTLDTVVSSSCCTSLDYM VTYLFKHIAKEGKKPLRCREAMQAGQRLLHFMQQNPDVLQQMMSVLMNTIVFEDCRNQWSVSRP LLGLILLNEKYFSELRASLINSQPLPKQEVLAQCFRNLMEGVEQNLSVKNRDRFTQNLSVFRRD VAEALRSDGHTELCSLDMMS hide sequence

RefSeq Acc Id:

XP_017452736 ⟸ XM_017597247

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSLAELEALCTHLYVGTDLNERIEAEKALLELIDSPECLSKCQLLLEQGTTSYAQLLAATCLSK
LVTRINPLPVEQRIDIRNYILNYVASQPKLAPFVIQALIQVIAKLTKLGWFEVQKDEFVFREII
ADVKKFLQGTVEHCIIGVIILSELTQEMNLVDYSRPSAKHRKVATSFRDTSLKDILVLACSLLK
QVLAKPLNLQDQDQQSLVMQVLKLVLSCLSFDFLGSSADESADDLCTVQIPTTWRTIFLEPETL
DLFFNSYHSLPPLLSQLALSCLVQFASTRRSLFSSPERAKYLGNLIKGVKRILENPQGLSDPGN
YHEFCRFLARLKTNYQLGELVLVKEYAEVIGLIANFTITSLQHWEFAPNSVHYLLTLWQRMVAS
VPFVKSAEPHLLDTYAPEITKAFITSRLESVAIVVRDNLEDPLDDTATVFQQLEQLCTVSRCEY
EKTCTLLVQLFDQNAQNYQKLLHSASGLAIDMAIQEGRLAWLIYLVGTVVGGRLTYTSTDEHDA
MDGELSCRVFQLISLMDTRLPRRTNEKIELAVLWFLDQFRKTYVGDQLQRTSKVVRPKNDVSRV
PEKAWKIVKVYARMSEVLGITDDNHVLETFMTKIVTNLKYWGRCEPVISRTLQFLNDLSVGYIL
LKKLVKIDAVKFMLKNHTREHFPFLGISDTYSVSDFRCRTTFYTALTRLLMVDLGEDEDEFENF
MLPLTVSFETVLQIFNNNFKQEEVKRMLIGLARDLRGIAFALNTKTSYTMLFDWMYPAYLPVLQ
RAIERWYGEPACTTPILKLLAELMQNRSQRLNFDVSSPNGILLFREASKMICTYGNQILSLGSL
SKDQIYPMKLKGISICYSALKSALCGNYVSFGVFKLYGDNHFDNVLQAFVKMLLSVSHSDLLQY
RKLSQSYYPLLECLTQDHMSFITNLEPPVLLYVLTSLSEGLTTLDTVVSSSCCTSLDYMVTYLF
KHIAKEGKKPLRCREAMQAGQRLLHFMQQNPDVLQQMMSVLMNTIVFEDCRNQWSVSRPLLGLI
LLNEKYFSELRASLINSQPLPKQEVLAQCFRNLMEGVEQNLSVKNRDRFTQNLSVFRRDVAEAL
RSDGHTELCSLDMMS

hide sequence

Ensembl Acc Id:

ENSRNOP00000075380 ⟸ ENSRNOT00000080021

Ensembl Acc Id:

ENSRNOP00000056640 ⟸ ENSRNOT00000059895

RefSeq Acc Id:	XP_038941825 ⟸ XM_039085897
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063125030 ⟸ XM_063268960
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063125029 ⟸ XM_063268959
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063125031 ⟸ XM_063268961
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000103619 ⟸ ENSRNOT00000153645

Ensembl Acc Id:

ENSRNOP00000107583 ⟸ ENSRNOT00000149000

Ensembl Acc Id:

ENSRNOP00000108129 ⟸ ENSRNOT00000141998

Protein Domains

Importin N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2KAF6-F1-model_v2	AlphaFold	A0A0G2KAF6	1-1108	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697100

Promoter ID:

EPDNEW_R7620

Type:

multiple initiation site

Name:

Ranbp17_1

Description:

RAN binding protein 17

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	18,444,036 - 18,444,096	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562576	AgrOrtholog
BioCyc Gene	G2FUF-25605	BioCyc
Ensembl Genes	ENSRNOG00000005042	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000059895	ENTREZGENE
	ENSRNOT00000059895.4	UniProtKB/TrEMBL
	ENSRNOT00000141998	ENTREZGENE
	ENSRNOT00000141998.1	UniProtKB/TrEMBL
	ENSRNOT00000149000.1	UniProtKB/TrEMBL
	ENSRNOT00000153645.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.10.10	UniProtKB/TrEMBL
InterPro	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	Importin-beta_N	UniProtKB/TrEMBL
	XPO4/7-like	UniProtKB/TrEMBL
KEGG Report	rno:303029	UniProtKB/TrEMBL
NCBI Gene	303029	ENTREZGENE
PANTHER	PTHR12596	UniProtKB/TrEMBL
	RAN-BINDING PROTEIN 17	UniProtKB/TrEMBL
Pfam	IBN_N	UniProtKB/TrEMBL
	TPR_XPO7	UniProtKB/TrEMBL
PhenoGen	Ranbp17	PhenoGen
RatGTEx	ENSRNOG00000005042	RatGTEx
SMART	IBN_N	UniProtKB/TrEMBL
Superfamily-SCOP	ARM-type_fold	UniProtKB/TrEMBL
UniProt	A0A0G2KAF6	ENTREZGENE
	A0ABK0L397_RAT	UniProtKB/TrEMBL
	A0ABK0LYI7_RAT	UniProtKB/TrEMBL
	A0ABK0LZS6_RAT	UniProtKB/TrEMBL
	A6HDG6	ENTREZGENE, UniProtKB/TrEMBL
	D3ZYN8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-29	Ranbp17	RAN binding protein 17	RGD1562576_predicted	similar to hypothetical protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1562576_predicted	similar to hypothetical protein (predicted)	LOC303029	similar to hypothetical protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC303029	similar to hypothetical protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar