Ranbp17 (RAN binding protein 17) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ranbp17 (RAN binding protein 17) Chinchilla lanigera
Analyze
Symbol: Ranbp17
Name: RAN binding protein 17
RGD ID: 8869807
Description: ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); hydrocephalus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ran-binding protein 17
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540823,777,698 - 24,092,682 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540823,777,501 - 24,092,993 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ranbp17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540823,777,698 - 24,092,682 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540823,777,501 - 24,092,993 (+)NCBIChiLan1.0ChiLan1.0
RANBP17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385170,862,018 - 171,300,015 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5170,861,870 - 171,300,015 (+)EnsemblGRCh38hg38GRCh38
GRCh375170,289,022 - 170,727,019 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365170,221,600 - 170,659,624 (+)NCBINCBI36Build 36hg18NCBI36
Build 345170,221,599 - 170,659,623NCBI
Celera5166,321,110 - 166,759,577 (+)NCBICelera
Cytogenetic Map5q35.1NCBI
HuRef5165,386,841 - 165,824,900 (+)NCBIHuRef
CHM1_15169,721,527 - 170,159,603 (+)NCBICHM1_1
T2T-CHM13v2.05171,402,331 - 171,840,355 (+)NCBIT2T-CHM13v2.0
Ranbp17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391133,161,794 - 33,463,789 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1133,161,795 - 33,463,746 (-)EnsemblGRCm39 Ensembl
GRCm381133,211,794 - 33,513,784 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1133,211,795 - 33,513,746 (-)EnsemblGRCm38mm10GRCm38
MGSCv371133,111,794 - 33,413,746 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361133,112,419 - 33,413,635 (-)NCBIMGSCv36mm8
Celera1135,623,919 - 35,926,644 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1119.21NCBI
Ranbp17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81018,304,634 - 18,607,162 (-)NCBIGRCr8
mRatBN7.21017,800,406 - 18,102,947 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1017,800,999 - 18,102,831 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1022,549,092 - 22,857,795 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01022,037,685 - 22,346,389 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01017,525,836 - 17,827,317 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01018,139,763 - 18,445,347 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1018,139,766 - 18,443,964 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01018,023,823 - 18,330,481 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41018,111,581 - 18,413,103 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1017,441,300 - 17,740,782 (-)NCBICelera
Cytogenetic Map10q12NCBI
RANBP17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24166,017,542 - 166,440,272 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15164,157,093 - 164,575,563 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05166,220,228 - 166,649,006 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15172,979,949 - 173,402,987 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5172,980,121 - 173,401,395 (+)Ensemblpanpan1.1panPan2
RANBP17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1440,828,393 - 41,126,981 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl440,828,395 - 41,127,268 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha440,778,918 - 41,079,709 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0441,208,134 - 41,509,345 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl441,208,137 - 41,509,291 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1441,022,717 - 41,323,476 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0441,213,065 - 41,513,833 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0441,723,475 - 42,024,572 (-)NCBIUU_Cfam_GSD_1.0
Ranbp17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721395,059,513 - 95,343,778 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366093,782,193 - 4,066,266 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366093,880,389 - 4,065,145 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RANBP17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1652,836,297 - 53,160,162 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11652,836,291 - 53,160,156 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21657,033,539 - 57,353,878 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RANBP17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12373,073,889 - 73,475,803 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2373,073,871 - 73,476,689 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660345,176,076 - 5,599,921 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ranbp17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473318,771,144 - 19,121,060 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473318,772,283 - 19,120,506 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000019428   ⟹   ENSCLAP00000019242
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540823,777,698 - 24,092,682 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000019429   ⟹   ENSCLAP00000019243
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540823,778,386 - 23,803,597 (+)Ensembl
RefSeq Acc Id: XM_005376323   ⟹   XP_005376380
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540823,777,501 - 24,092,993 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005376324   ⟹   XP_005376381
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540823,777,501 - 24,092,993 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005376325   ⟹   XP_005376382
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540823,777,501 - 24,092,993 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005376326   ⟹   XP_005376383
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540823,777,501 - 24,092,993 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005376380 (Get FASTA)   NCBI Sequence Viewer  
  XP_005376381 (Get FASTA)   NCBI Sequence Viewer  
  XP_005376382 (Get FASTA)   NCBI Sequence Viewer  
  XP_005376383 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019242
  ENSCLAP00000019242.1
  ENSCLAP00000019243.1
Reference Protein Sequences
RefSeq Acc Id: XP_005376383   ⟸   XM_005376326
- Peptide Label: isoform X4
- UniProtKB: A0A8C2YS41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005376380   ⟸   XM_005376323
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005376382   ⟸   XM_005376325
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005376381   ⟸   XM_005376324
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000019242   ⟸   ENSCLAT00000019428
RefSeq Acc Id: ENSCLAP00000019243   ⟸   ENSCLAT00000019429
Protein Domains
Importin N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013185 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019428 ENTREZGENE
  ENSCLAT00000019428.1 UniProtKB/TrEMBL
  ENSCLAT00000019429.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Importin-beta_N UniProtKB/TrEMBL
  XPO4/7-like UniProtKB/TrEMBL
NCBI Gene Ranbp17 ENTREZGENE
PANTHER PTHR12596 UniProtKB/TrEMBL
  RAN-BINDING PROTEIN 17 UniProtKB/TrEMBL
Pfam IBN_N UniProtKB/TrEMBL
PROSITE IMPORTIN_B_NT UniProtKB/TrEMBL
SMART IBN_N UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C2VR12_CHILA UniProtKB/TrEMBL
  A0A8C2YS41 ENTREZGENE, UniProtKB/TrEMBL