Ranbp17 (RAN binding protein 17) - Rat Genome Database

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Gene: Ranbp17 (RAN binding protein 17) Heterocephalus glaber
Analyze
Symbol: Ranbp17
Name: RAN binding protein 17
RGD ID: 18909475
Description: ENCODES a protein that exhibits nuclear export signal receptor activity (inferred); small GTPase binding (inferred); INVOLVED IN intracellular protein transport (inferred); nuclear transport (inferred); protein export from nucleus (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); hydrocephalus (ortholog); FOUND IN cytoplasm (inferred); nuclear pore (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ran-binding protein 17
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473318,771,144 - 19,121,060 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473318,772,283 - 19,120,506 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nuclear pore  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ranbp17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473318,771,144 - 19,121,060 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473318,772,283 - 19,120,506 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RANBP17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385170,862,018 - 171,300,015 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5170,861,870 - 171,300,015 (+)EnsemblGRCh38hg38GRCh38
GRCh375170,289,022 - 170,727,019 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365170,221,600 - 170,659,624 (+)NCBINCBI36Build 36hg18NCBI36
Build 345170,221,599 - 170,659,623NCBI
Celera5166,321,110 - 166,759,577 (+)NCBICelera
Cytogenetic Map5q35.1NCBI
HuRef5165,386,841 - 165,824,900 (+)NCBIHuRef
CHM1_15169,721,527 - 170,159,603 (+)NCBICHM1_1
T2T-CHM13v2.05171,402,331 - 171,840,355 (+)NCBIT2T-CHM13v2.0
Ranbp17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391133,161,794 - 33,463,789 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1133,161,795 - 33,463,746 (-)EnsemblGRCm39 Ensembl
GRCm381133,211,794 - 33,513,784 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1133,211,795 - 33,513,746 (-)EnsemblGRCm38mm10GRCm38
MGSCv371133,111,794 - 33,413,746 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361133,112,419 - 33,413,635 (-)NCBIMGSCv36mm8
Celera1135,623,919 - 35,926,644 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1119.21NCBI
Ranbp17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81018,304,634 - 18,607,162 (-)NCBIGRCr8
mRatBN7.21017,800,406 - 18,102,947 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1017,800,999 - 18,102,831 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1022,549,092 - 22,857,795 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01022,037,685 - 22,346,389 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01017,525,836 - 17,827,317 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01018,139,763 - 18,445,347 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1018,139,766 - 18,443,964 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01018,023,823 - 18,330,481 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41018,111,581 - 18,413,103 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1017,441,300 - 17,740,782 (-)NCBICelera
Cytogenetic Map10q12NCBI
Ranbp17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540823,777,698 - 24,092,682 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540823,777,501 - 24,092,993 (+)NCBIChiLan1.0ChiLan1.0
RANBP17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24166,017,542 - 166,440,272 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15164,157,093 - 164,575,563 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05166,220,228 - 166,649,006 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15172,979,949 - 173,402,987 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5172,980,121 - 173,401,395 (+)Ensemblpanpan1.1panPan2
RANBP17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1440,828,393 - 41,126,981 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl440,828,395 - 41,127,268 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha440,778,918 - 41,079,709 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0441,208,134 - 41,509,345 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl441,208,137 - 41,509,291 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1441,022,717 - 41,323,476 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0441,213,065 - 41,513,833 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0441,723,475 - 42,024,572 (-)NCBIUU_Cfam_GSD_1.0
Ranbp17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721395,059,513 - 95,343,778 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366093,782,193 - 4,066,266 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366093,880,389 - 4,065,145 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RANBP17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1652,836,297 - 53,160,162 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11652,836,291 - 53,160,156 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21657,033,539 - 57,353,878 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RANBP17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12373,073,889 - 73,475,803 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2373,073,871 - 73,476,689 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660345,176,076 - 5,599,921 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004836388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013078434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021239677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021239685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002387498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01008346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01008347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01008348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01008349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01008350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01008351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01008352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01008353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01008354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01008355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01005573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000020627   ⟹   ENSHGLP00000020425
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473318,771,144 - 19,121,060 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000020628   ⟹   ENSHGLP00000020426
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473318,771,144 - 19,121,060 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000020629   ⟹   ENSHGLP00000020427
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473318,771,144 - 19,112,779 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000020630   ⟹   ENSHGLP00000020428
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473319,084,291 - 19,119,635 (-)Ensembl
RefSeq Acc Id: XM_004836388   ⟹   XP_004836445
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473318,772,283 - 19,120,506 (-)NCBI
RefSeq Acc Id: XM_013078434   ⟹   XP_012933888
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473318,772,283 - 19,120,506 (-)NCBI
RefSeq Acc Id: XM_021239677   ⟹   XP_021095336
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473318,772,283 - 19,120,315 (-)NCBI
RefSeq Acc Id: XM_021239685   ⟹   XP_021095344
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473318,772,283 - 19,120,314 (-)NCBI
RefSeq Acc Id: XR_002387498
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473318,823,983 - 19,120,321 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_004836445   ⟸   XM_004836388
- Peptide Label: isoform X4
- UniProtKB: A0A0P6J1T2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012933888   ⟸   XM_013078434
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021095336   ⟸   XM_021239677
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021095344   ⟸   XM_021239685
- Peptide Label: isoform X3
RefSeq Acc Id: ENSHGLP00000020428   ⟸   ENSHGLT00000020630
RefSeq Acc Id: ENSHGLP00000020427   ⟸   ENSHGLT00000020629
RefSeq Acc Id: ENSHGLP00000020425   ⟸   ENSHGLT00000020627
RefSeq Acc Id: ENSHGLP00000020426   ⟸   ENSHGLT00000020628


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014605 Ensembl, ENTREZGENE
  ENSHGLG00100011629 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000020627 ENTREZGENE
  ENSHGLT00000020628 ENTREZGENE
  ENSHGLT00000020629 ENTREZGENE
  ENSHGLT00100015928 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Importin-beta_N UniProtKB/TrEMBL
  XPO4/7-like UniProtKB/TrEMBL
KEGG Report hgl:101703296 UniProtKB/TrEMBL
NCBI Gene Ranbp17 ENTREZGENE
PANTHER PTHR12596 UniProtKB/TrEMBL
  RAN-BINDING PROTEIN 17 UniProtKB/TrEMBL
Pfam IBN_N UniProtKB/TrEMBL
SMART IBN_N UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A0P6J1T2 ENTREZGENE, UniProtKB/TrEMBL