Fbxo44 (F-box protein 44) - Rat Genome Database

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Gene: Fbxo44 (F-box protein 44) Rattus norvegicus
Analyze
Symbol: Fbxo44
Name: F-box protein 44
RGD ID: 1562463
Description: Predicted to enable carbohydrate binding activity. Predicted to contribute to ubiquitin protein ligase activity. Predicted to be involved in ERAD pathway; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; and glycoprotein catabolic process. Predicted to act upstream of or within proteasomal protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human FBXO44 (F-box protein 44); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-Tetrachlorodibenzofuran; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: F-box only protein 44; LOC500587; RGD1562463; similar to : F-box protein 44
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85163,866,517 - 163,875,928 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5163,866,517 - 163,875,614 (-)EnsemblGRCr8
mRatBN7.25158,583,363 - 158,592,510 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5158,583,366 - 158,592,363 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5161,300,649 - 161,309,123 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05163,122,440 - 163,130,914 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05163,078,789 - 163,087,259 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05164,962,921 - 164,972,273 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5164,963,433 - 164,971,903 (-)Ensemblrn6Rnor6.0
Rnor_5.05168,620,959 - 168,630,233 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45165,230,006 - 165,238,525 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5156,863,159 - 156,870,562 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA)
nucleus  (IEA,ISO)
SCF ubiquitin ligase complex  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18203720   PMID:19028597   PMID:25970626  


Genomics

Comparative Map Data
Fbxo44
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85163,866,517 - 163,875,928 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5163,866,517 - 163,875,614 (-)EnsemblGRCr8
mRatBN7.25158,583,363 - 158,592,510 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5158,583,366 - 158,592,363 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5161,300,649 - 161,309,123 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05163,122,440 - 163,130,914 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05163,078,789 - 163,087,259 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05164,962,921 - 164,972,273 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5164,963,433 - 164,971,903 (-)Ensemblrn6Rnor6.0
Rnor_5.05168,620,959 - 168,630,233 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45165,230,006 - 165,238,525 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5156,863,159 - 156,870,562 (-)NCBICelera
Cytogenetic Map5q36NCBI
FBXO44
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38111,654,407 - 11,663,327 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl111,650,618 - 11,663,327 (+)Ensemblhg38GRCh38
GRCh37111,714,464 - 11,723,384 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36111,637,019 - 11,645,971 (+)NCBIBuild 36Build 36hg18NCBI36
Celera110,826,494 - 10,835,441 (+)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef110,868,528 - 10,877,542 (+)NCBIHuRef
CHM1_1111,702,419 - 11,711,370 (+)NCBICHM1_1
T2T-CHM13v2.0111,198,459 - 11,207,382 (+)NCBIT2T-CHM13v2.0
Fbxo44
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394148,237,256 - 148,244,663 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4148,237,257 - 148,244,939 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm384148,152,799 - 148,160,183 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4148,152,800 - 148,160,482 (-)Ensemblmm10GRCm38
MGSCv374147,526,909 - 147,534,173 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364146,996,601 - 147,003,680 (-)NCBIMGSCv36mm8
Celera4150,414,144 - 150,420,371 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map478.67NCBI
Fbxo44
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554862,204,470 - 2,210,604 (-)Ensembl
ChiLan1.0NW_0049554862,204,470 - 2,210,604 (-)NCBIChiLan1.0ChiLan1.0
FBXO6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21216,550,354 - 216,557,625 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11215,196,499 - 215,209,566 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0110,414,856 - 10,436,406 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1111,632,724 - 11,641,286 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl111,643,009 - 11,654,837 (+)EnsemblpanPan2panpan1.1
PanPan1.1 Ensembl111,643,009 - 11,654,837 (+)NCBIpanPan2panpan1.1
PanPan1.1 Ensembl111,632,768 - 11,640,846 (+)EnsemblpanPan2panpan1.1
FBXO44
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1284,557,468 - 84,562,578 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha281,089,720 - 81,095,293 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0285,220,535 - 85,225,778 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl285,220,537 - 85,225,672 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1281,969,300 - 81,974,662 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0282,970,031 - 82,975,586 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0284,032,774 - 84,038,260 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fbxo44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505834,701,331 - 34,709,683 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936474525,862 - 532,152 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936474526,191 - 531,825 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO44
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl671,743,261 - 71,774,223 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1671,747,210 - 71,754,519 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2665,666,697 - 65,673,467 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FBXO44
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120120,128,422 - 120,137,081 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20120,127,750 - 120,136,395 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605423,996,752 - 24,005,502 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Fbxo44
45 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:205
Count of miRNA genes:81
Interacting mature miRNAs:98
Transcripts:ENSRNOT00000067059, ENSRNOT00000067109
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5141212838172190305Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5149642129171146538Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5160111176171146538Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134369199172190305Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136631198172190305Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5156396728172190305Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5138002522170842766Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5160071170172129029Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5141764300172190305Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5148093485172129029Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5156396728167181764Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5149661912166600247Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5156289283171137955Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 87 59 6 351 187 11 140 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005504529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC094126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000067059   ⟹   ENSRNOP00000059513
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5163,867,029 - 163,875,614 (-)Ensembl
mRatBN7.2 Ensembl5158,583,876 - 158,592,330 (-)Ensembl
Rnor_6.0 Ensembl5164,963,433 - 164,971,903 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101645   ⟹   ENSRNOP00000084845
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5163,866,517 - 163,875,522 (-)Ensembl
mRatBN7.2 Ensembl5158,583,366 - 158,592,363 (-)Ensembl
RefSeq Acc Id: NM_001191576   ⟹   NP_001178505
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,867,029 - 163,875,499 (-)NCBI
mRatBN7.25158,583,876 - 158,592,346 (-)NCBI
Rnor_6.05164,963,433 - 164,971,903 (-)NCBI
Rnor_5.05168,620,959 - 168,630,233 (-)NCBI
Celera5156,863,159 - 156,870,562 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239392   ⟹   XP_006239454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,866,517 - 163,875,452 (-)NCBI
mRatBN7.25158,583,363 - 158,592,298 (-)NCBI
Rnor_6.05164,962,921 - 164,971,881 (-)NCBI
Rnor_5.05168,620,959 - 168,630,233 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239393   ⟹   XP_006239455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,866,517 - 163,875,454 (-)NCBI
mRatBN7.25158,583,363 - 158,592,298 (-)NCBI
Rnor_6.05164,962,921 - 164,971,881 (-)NCBI
Rnor_5.05168,620,959 - 168,630,233 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239395   ⟹   XP_006239457
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,866,517 - 163,875,534 (-)NCBI
mRatBN7.25158,583,363 - 158,592,510 (-)NCBI
Rnor_6.05164,962,921 - 164,972,085 (-)NCBI
Rnor_5.05168,620,959 - 168,630,233 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239398   ⟹   XP_006239460
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,866,517 - 163,875,619 (-)NCBI
mRatBN7.25158,583,363 - 158,592,500 (-)NCBI
Rnor_6.05164,962,921 - 164,972,086 (-)NCBI
Rnor_5.05168,620,959 - 168,630,233 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039110645   ⟹   XP_038966573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,871,397 - 163,875,475 (-)NCBI
mRatBN7.25158,588,245 - 158,592,317 (-)NCBI
RefSeq Acc Id: XM_063288301   ⟹   XP_063144371
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,866,517 - 163,875,618 (-)NCBI
RefSeq Acc Id: XM_063288302   ⟹   XP_063144372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,866,517 - 163,875,928 (-)NCBI
RefSeq Acc Id: XM_063288303   ⟹   XP_063144373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,866,517 - 163,875,539 (-)NCBI
RefSeq Acc Id: XM_063288304   ⟹   XP_063144374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,866,517 - 163,874,036 (-)NCBI
RefSeq Acc Id: XR_005504529
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85163,871,495 - 163,875,468 (-)NCBI
mRatBN7.25158,588,336 - 158,592,311 (-)NCBI
RefSeq Acc Id: NP_001178505   ⟸   NM_001191576
- UniProtKB: D4A6R1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239457   ⟸   XM_006239395
- Peptide Label: isoform X4
- UniProtKB: D4A6R1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239460   ⟸   XM_006239398
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006239455   ⟸   XM_006239393
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006239454   ⟸   XM_006239392
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000059513   ⟸   ENSRNOT00000067059
RefSeq Acc Id: XP_038966573   ⟸   XM_039110645
- Peptide Label: isoform X7
- UniProtKB: A6IU61 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000084845   ⟸   ENSRNOT00000101645
RefSeq Acc Id: XP_063144372   ⟸   XM_063288302
- Peptide Label: isoform X6
- UniProtKB: A0A8I6A0Z6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144371   ⟸   XM_063288301
- Peptide Label: isoform X3
- UniProtKB: D4A6R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144373   ⟸   XM_063288303
- Peptide Label: isoform X6
- UniProtKB: A0A8I6A0Z6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144374   ⟸   XM_063288304
- Peptide Label: isoform X8
Protein Domains
F-box   FBA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A6R1-F1-model_v2 AlphaFold D4A6R1 1-255 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694258
Promoter ID:EPDNEW_R4783
Type:multiple initiation site
Name:Fbxo44_1
Description:F-box protein 44
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05164,971,943 - 164,972,003EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562463 AgrOrtholog
BioCyc Gene G2FUF-39173 BioCyc
Ensembl Genes ENSRNOG00000009298 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067059 ENTREZGENE
  ENSRNOT00000067059.5 UniProtKB/TrEMBL
  ENSRNOT00000101645 ENTREZGENE
  ENSRNOT00000101645.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
InterPro F-box-assoc_dom UniProtKB/TrEMBL
  F-box_dom_cyclin-like UniProtKB/TrEMBL
  F-box_dom_like UniProtKB/TrEMBL
  F-box_only UniProtKB/TrEMBL
  Galactose-bd-like UniProtKB/TrEMBL
NCBI Gene 500587 ENTREZGENE
PANTHER F-BOX ONLY PROTEIN 44 UniProtKB/TrEMBL
  PTHR12125 UniProtKB/TrEMBL
Pfam F-box-like UniProtKB/TrEMBL
  FBA UniProtKB/TrEMBL
PhenoGen Fbxo44 PhenoGen
PROSITE FBA UniProtKB/TrEMBL
  FBOX UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009298 RatGTEx
SMART FBA UniProtKB/TrEMBL
  FBOX UniProtKB/TrEMBL
Superfamily-SCOP F-box_dom_Skp2-like UniProtKB/TrEMBL
  Gal_bind_like UniProtKB/TrEMBL
UniProt A0A8I6A0Z6 ENTREZGENE, UniProtKB/TrEMBL
  A6IU61 ENTREZGENE, UniProtKB/TrEMBL
  D4A6R1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-29 Fbxo44  F-box protein 44  RGD1562463_predicted  similar to : F-box protein 44 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562463_predicted  similar to : F-box protein 44 (predicted)  LOC500587  similar to : F-box protein 44  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500587  similar to : F-box protein 44      Symbol and Name status set to provisional 70820 PROVISIONAL