Cep63 (centrosomal protein 63) - Rat Genome Database

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Gene: Cep63 (centrosomal protein 63) Rattus norvegicus
Analyze
Symbol: Cep63
Name: centrosomal protein 63
RGD ID: 1561183
Description: Predicted to enable molecular adaptor activity. Predicted to be involved in several processes, including membraneless organelle assembly; negative regulation of protein K63-linked ubiquitination; and protein stabilization. Predicted to act upstream of or within several processes, including centrosome duplication; meiosis I; and negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator. Predicted to be located in centrosome and spindle pole. Predicted to be active in centriole. Human ortholog(s) of this gene implicated in Seckel syndrome 6. Orthologous to human CEP63 (centrosomal protein 63); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; doxorubicin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: centrosomal protein 63kDa; centrosomal protein of 63 kDa; LOC300963; MGC114577; similar to centrosome protein Cep63
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,041,586 - 112,093,061 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8112,041,594 - 112,084,646 (-)EnsemblGRCr8
mRatBN7.28103,162,639 - 103,214,177 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8103,162,700 - 103,214,177 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8108,826,036 - 108,877,504 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,025,199 - 107,076,667 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08104,867,878 - 104,919,347 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,063,988 - 111,116,014 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,064,049 - 111,116,014 (-)Ensemblrn6Rnor6.0
Rnor_5.08110,462,226 - 110,513,824 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48107,548,503 - 107,600,193 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8102,544,372 - 102,595,647 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centriolar satellite  (IEA)
centriole  (IBA,IEA,ISO,ISS)
centrosome  (IEA,ISO,ISS)
ciliary basal body  (IEA,ISO)
spindle pole  (ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:14654843   PMID:21399614   PMID:24240477   PMID:26158450   PMID:26297806  


Genomics

Comparative Map Data
Cep63
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,041,586 - 112,093,061 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8112,041,594 - 112,084,646 (-)EnsemblGRCr8
mRatBN7.28103,162,639 - 103,214,177 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8103,162,700 - 103,214,177 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8108,826,036 - 108,877,504 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,025,199 - 107,076,667 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08104,867,878 - 104,919,347 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,063,988 - 111,116,014 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,064,049 - 111,116,014 (-)Ensemblrn6Rnor6.0
Rnor_5.08110,462,226 - 110,513,824 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48107,548,503 - 107,600,193 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8102,544,372 - 102,595,647 (-)NCBICelera
Cytogenetic Map8q32NCBI
CEP63
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383134,485,724 - 134,782,559 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3134,485,699 - 134,587,789 (+)Ensemblhg38GRCh38
GRCh373134,204,566 - 134,293,855 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363135,687,265 - 135,776,545 (+)NCBIBuild 36Build 36hg18NCBI36
Celera3132,630,858 - 132,719,766 (+)NCBICelera
Cytogenetic Map3q22.2NCBI
HuRef3131,582,219 - 131,671,534 (+)NCBIHuRef
CHM1_13134,168,929 - 134,258,192 (+)NCBICHM1_1
T2T-CHM13v2.03137,230,895 - 137,527,929 (+)NCBIT2T-CHM13v2.0
Cep63
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399102,461,784 - 102,503,748 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9102,461,787 - 102,503,733 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm389102,586,578 - 102,626,564 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9102,584,588 - 102,626,534 (-)Ensemblmm10GRCm38
MGSCv379102,488,908 - 102,528,454 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369102,442,841 - 102,483,374 (-)NCBIMGSCv36mm8
Celera9102,127,465 - 102,167,080 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map954.61NCBI
Cep63
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555014,032,223 - 4,095,970 (-)Ensembl
ChiLan1.0NW_0049555014,032,281 - 4,095,990 (-)NCBIChiLan1.0ChiLan1.0
CEP63
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22132,411,946 - 132,501,176 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13132,416,675 - 132,505,905 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03131,532,450 - 131,609,240 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13139,003,890 - 139,115,026 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3139,003,898 - 139,092,680 (+)EnsemblpanPan2panpan1.1
CEP63
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12331,249,517 - 31,303,145 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2331,249,673 - 31,303,142 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2331,227,173 - 31,281,914 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02331,764,350 - 31,818,191 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2331,764,561 - 31,818,295 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12331,461,558 - 31,515,366 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02331,520,970 - 31,575,933 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02331,767,983 - 31,822,741 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cep63
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560270,816,931 - 70,871,801 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365297,585,839 - 7,635,439 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365297,577,122 - 7,632,161 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP63
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1375,605,675 - 75,707,102 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11375,605,622 - 75,707,087 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21383,132,475 - 83,234,187 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEP63
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11555,821,117 - 55,892,951 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1555,821,487 - 55,892,398 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604128,746,939 - 28,876,552 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cep63
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473010,817,662 - 10,864,664 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473010,811,159 - 10,861,973 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cep63
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1893,882,813 - 93,925,531 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cep63
756 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:192
Count of miRNA genes:130
Interacting mature miRNAs:136
Transcripts:ENSRNOT00000031313, ENSRNOT00000056531
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)897492344116428905Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8111249511117802327Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
BF390936  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,167,280 - 103,167,431 (+)MAPPERmRatBN7.2
Rnor_6.08111,068,630 - 111,068,780NCBIRnor6.0
Rnor_5.08110,466,863 - 110,467,013UniSTSRnor5.0
RGSC_v3.48107,553,088 - 107,553,238UniSTSRGSC3.4
Celera8102,548,961 - 102,549,111UniSTS
RH 3.4 Map81154.4UniSTS
Cytogenetic Map8q32UniSTS
AI012039  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,162,846 - 103,162,961 (+)MAPPERmRatBN7.2
Rnor_6.08111,064,196 - 111,064,310NCBIRnor6.0
Rnor_5.08110,462,429 - 110,462,543UniSTSRnor5.0
RGSC_v3.48107,548,654 - 107,548,768UniSTSRGSC3.4
Celera8102,544,527 - 102,544,641UniSTS
RH 3.4 Map81168.8UniSTS
Cytogenetic Map8q32UniSTS
D9Mgc48e  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,171,580 - 103,171,661 (+)MAPPERmRatBN7.2
Rnor_6.08111,072,930 - 111,073,010NCBIRnor6.0
Rnor_5.08110,471,163 - 110,471,243UniSTSRnor5.0
RGSC_v3.48107,557,388 - 107,557,468UniSTSRGSC3.4
Celera8102,553,261 - 102,553,341UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001037772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001244805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_045200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC083632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC161815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000031313   ⟹   ENSRNOP00000029550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8112,041,594 - 112,084,310 (-)Ensembl
mRatBN7.2 Ensembl8103,162,741 - 103,205,428 (-)Ensembl
Rnor_6.0 Ensembl8111,064,050 - 111,107,599 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000056531   ⟹   ENSRNOP00000053371
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8112,041,594 - 112,084,220 (-)Ensembl
mRatBN7.2 Ensembl8103,162,700 - 103,214,177 (-)Ensembl
Rnor_6.0 Ensembl8111,064,049 - 111,116,014 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084413   ⟹   ENSRNOP00000070249
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8112,041,594 - 112,084,310 (-)Ensembl
mRatBN7.2 Ensembl8103,162,700 - 103,205,428 (-)Ensembl
Rnor_6.0 Ensembl8111,064,116 - 111,101,416 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099786   ⟹   ENSRNOP00000083027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8112,041,594 - 112,084,057 (-)Ensembl
mRatBN7.2 Ensembl8103,162,797 - 103,205,428 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114079   ⟹   ENSRNOP00000092635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8112,047,795 - 112,084,646 (-)Ensembl
mRatBN7.2 Ensembl8103,169,629 - 103,205,796 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000155442   ⟹   ENSRNOP00000102688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8112,043,697 - 112,080,757 (-)Ensembl
RefSeq Acc Id: NM_001037772   ⟹   NP_001032861
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,041,590 - 112,093,061 (-)NCBI
mRatBN7.28103,162,696 - 103,214,177 (-)NCBI
Rnor_6.08111,064,045 - 111,116,014 (-)NCBI
Rnor_5.08110,462,226 - 110,513,824 (-)NCBI
RGSC_v3.48107,548,503 - 107,600,193 (-)RGD
Celera8102,544,376 - 102,595,647 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001244805   ⟹   NP_001231734
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,041,595 - 112,084,646 (-)NCBI
mRatBN7.28103,162,701 - 103,205,761 (-)NCBI
Rnor_6.08111,064,050 - 111,107,599 (-)NCBI
Rnor_5.08110,462,226 - 110,513,824 (-)NCBI
Celera8102,544,381 - 102,587,232 (-)NCBI
Sequence:
RefSeq Acc Id: NR_045200
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,041,586 - 112,084,222 (-)NCBI
mRatBN7.28103,162,692 - 103,205,337 (-)NCBI
Rnor_6.08111,064,041 - 111,107,175 (-)NCBI
Rnor_5.08110,462,226 - 110,513,824 (-)NCBI
Celera8102,544,372 - 102,586,808 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595591   ⟹   XP_017451080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,041,586 - 112,084,464 (-)NCBI
mRatBN7.28103,162,647 - 103,205,569 (-)NCBI
Rnor_6.08111,063,996 - 111,080,517 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039081191   ⟹   XP_038937119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,041,586 - 112,084,261 (-)NCBI
mRatBN7.28103,162,639 - 103,205,371 (-)NCBI
RefSeq Acc Id: XM_039081193   ⟹   XP_038937121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,041,586 - 112,084,474 (-)NCBI
mRatBN7.28103,162,966 - 103,205,627 (-)NCBI
RefSeq Acc Id: XM_039081195   ⟹   XP_038937123
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,041,586 - 112,084,464 (-)NCBI
mRatBN7.28103,162,966 - 103,205,625 (-)NCBI
RefSeq Acc Id: XM_039081196   ⟹   XP_038937124
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,041,586 - 112,084,261 (-)NCBI
mRatBN7.28103,162,966 - 103,205,377 (-)NCBI
RefSeq Acc Id: XM_039081199   ⟹   XP_038937127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,041,586 - 112,084,258 (-)NCBI
mRatBN7.28103,162,639 - 103,205,371 (-)NCBI
RefSeq Acc Id: XM_063265227   ⟹   XP_063121297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,041,586 - 112,083,662 (-)NCBI
RefSeq Acc Id: XM_063265229   ⟹   XP_063121299
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,041,586 - 112,055,881 (-)NCBI
RefSeq Acc Id: NP_001032861   ⟸   NM_001037772
- Peptide Label: isoform 1 precursor
- UniProtKB: A0A096MIU4 (UniProtKB/TrEMBL),   A6I2H5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231734   ⟸   NM_001244805
- Peptide Label: isoform 2
- UniProtKB: Q4KLY0 (UniProtKB/Swiss-Prot),   A6I2H5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451080   ⟸   XM_017595591
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSRNOP00000029550   ⟸   ENSRNOT00000031313
Ensembl Acc Id: ENSRNOP00000070249   ⟸   ENSRNOT00000084413
Ensembl Acc Id: ENSRNOP00000053371   ⟸   ENSRNOT00000056531
RefSeq Acc Id: XP_038937127   ⟸   XM_039081199
- Peptide Label: isoform X4
- UniProtKB: A6I2H5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937119   ⟸   XM_039081191
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937121   ⟸   XM_039081193
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937123   ⟸   XM_039081195
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038937124   ⟸   XM_039081196
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000092635   ⟸   ENSRNOT00000114079
Ensembl Acc Id: ENSRNOP00000083027   ⟸   ENSRNOT00000099786
RefSeq Acc Id: XP_063121297   ⟸   XM_063265227
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121299   ⟸   XM_063265229
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000102688   ⟸   ENSRNOT00000155442
Protein Domains
CEP63/Deup1 CEP152 binding coiled coil   CEP63/Deup1 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4KLY0-F1-model_v2 AlphaFold Q4KLY0 1-538 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696225
Promoter ID:EPDNEW_R6749
Type:multiple initiation site
Name:Cep63_1
Description:centrosomal protein 63
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08111,107,611 - 111,107,671EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561183 AgrOrtholog
BioCyc Gene G2FUF-29349 BioCyc
Ensembl Genes ENSRNOG00000008410 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000031313 ENTREZGENE
  ENSRNOT00000084413 ENTREZGENE
  ENSRNOT00000099786 ENTREZGENE
  ENSRNOT00000114079 ENTREZGENE
Gene3D-CATH 1.20.5.340 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7134549 IMAGE-MGC_LOAD
  IMAGE:9031816 IMAGE-MGC_LOAD
InterPro Cep63/Deup1_N UniProtKB/Swiss-Prot
KEGG Report rno:300963 UniProtKB/Swiss-Prot
MGC_CLONE MGC:187263 IMAGE-MGC_LOAD
  MGC:94440 IMAGE-MGC_LOAD
NCBI Gene 300963 ENTREZGENE
PANTHER PTHR18875:SF7 UniProtKB/Swiss-Prot
  SARCOMA ANTIGEN NY-SAR-24/CYTOSKELETAL PROTEIN SOJO UniProtKB/Swiss-Prot
Pfam CEP63 UniProtKB/Swiss-Prot
PhenoGen Cep63 PhenoGen
RatGTEx ENSRNOG00000008410 RatGTEx
UniProt A0A096MIU4 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JXF3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZV14_RAT UniProtKB/TrEMBL
  A0A8I6AVX5_RAT UniProtKB/TrEMBL
  A0A8L2UKK7_RAT UniProtKB/TrEMBL
  A0ABK0L236_RAT UniProtKB/TrEMBL
  A6I2H5 ENTREZGENE, UniProtKB/TrEMBL
  CEP63_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-20 Cep63  centrosomal protein 63kDa  LOC300963  similar to centrosome protein Cep63  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-20 Cep63  centrosomal protein 63  Cep63  centrosomal protein 63kDa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC300963  similar to centrosome protein Cep63      Symbol and Name status set to provisional 70820 PROVISIONAL