Heatr5a (HEAT repeat containing 5A) - Rat Genome Database

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Gene: Heatr5a (HEAT repeat containing 5A) Rattus norvegicus
Analyze
Symbol: Heatr5a
Name: HEAT repeat containing 5A
RGD ID: 1561116
Description: Predicted to be involved in endocytosis; intracellular protein localization; and retrograde transport, endosome to Golgi. Predicted to be located in clathrin-coated vesicle and cytosol. Predicted to be active in Golgi apparatus and endocytic vesicle. Orthologous to human HEATR5A (HEAT repeat containing 5A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: HEAT repeat-containing protein 5A; LOC362737; RGD1561116; similar to RIKEN cDNA D930036F22 gene
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8675,057,226 - 75,155,207 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl675,057,226 - 75,155,120 (-)EnsemblGRCr8
mRatBN7.2669,321,869 - 69,419,861 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl669,321,869 - 69,419,773 (-)EnsemblmRatBN7.2
Rnor_6.0672,648,654 - 72,750,202 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl672,648,662 - 72,750,170 (-)Ensemblrn6Rnor6.0
Rnor_5.0682,211,311 - 82,299,984 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4672,024,109 - 72,112,681 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera668,197,744 - 68,295,557 (-)NCBICelera
Cytogenetic Map6q23NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:30361391  


Genomics

Comparative Map Data
Heatr5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8675,057,226 - 75,155,207 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl675,057,226 - 75,155,120 (-)EnsemblGRCr8
mRatBN7.2669,321,869 - 69,419,861 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl669,321,869 - 69,419,773 (-)EnsemblmRatBN7.2
Rnor_6.0672,648,654 - 72,750,202 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl672,648,662 - 72,750,170 (-)Ensemblrn6Rnor6.0
Rnor_5.0682,211,311 - 82,299,984 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4672,024,109 - 72,112,681 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera668,197,744 - 68,295,557 (-)NCBICelera
Cytogenetic Map6q23NCBI
HEATR5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381431,291,788 - 31,420,550 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1431,290,636 - 31,420,607 (-)Ensemblhg38GRCh38
GRCh371431,760,994 - 31,889,756 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361430,832,103 - 30,927,932 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341430,831,558 - 30,922,706NCBI
Celera1411,626,496 - 11,723,479 (-)NCBICelera
Cytogenetic Map14q12NCBI
HuRef1411,878,270 - 12,007,294 (-)NCBIHuRef
CHM1_11431,760,051 - 31,888,641 (-)NCBICHM1_1
T2T-CHM13v2.01425,489,675 - 25,618,192 (-)NCBIT2T-CHM13v2.0
Heatr5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391251,922,654 - 52,018,154 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1251,922,654 - 52,018,104 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381251,875,871 - 51,971,371 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1251,875,871 - 51,971,321 (-)Ensemblmm10GRCm38
MGSCv371252,976,860 - 53,072,308 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361252,797,493 - 52,892,941 (-)NCBIMGSCv36mm8
Celera1253,180,906 - 53,275,990 (-)NCBICelera
Cytogenetic Map12C1NCBI
Heatr5a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540929,208,050 - 29,312,752 (+)Ensembl
ChiLan1.0NW_00495540929,208,050 - 29,312,752 (+)NCBIChiLan1.0ChiLan1.0
HEATR5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21532,622,546 - 32,751,728 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11431,839,050 - 31,968,233 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01412,070,011 - 12,230,065 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11430,267,861 - 30,395,893 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1430,267,861 - 30,395,893 (-)EnsemblpanPan2panpan1.1
HEATR5A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1810,561,723 - 10,673,506 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl810,562,425 - 10,658,597 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha810,488,485 - 10,522,654 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0810,663,584 - 10,775,409 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl810,663,658 - 10,775,356 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1810,346,098 - 10,457,867 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0810,423,220 - 10,534,811 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0810,707,243 - 10,819,049 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Heatr5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864042,396,649 - 42,518,372 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364945,903,892 - 6,008,582 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364945,902,543 - 6,024,106 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HEATR5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl768,211,624 - 68,259,794 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1768,143,597 - 68,259,087 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2773,024,717 - 73,140,661 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HEATR5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl248,147,403 - 8,253,117 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Heatr5a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624820907,396 - 1,021,455 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624820891,562 - 1,022,586 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Heatr5a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1765,314,715 - 65,404,713 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Heatr5a
435 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:176
Count of miRNA genes:124
Interacting mature miRNAs:148
Transcripts:ENSRNOT00000035309
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64451097489510974Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)64515378690153786Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)66345744194939581Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)64604735391047353Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)63332884178328841Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)66303731995934232Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)63332884178328841Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)66345744194939581Rat

Markers in Region
RH141600  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2669,386,478 - 69,386,662 (+)MAPPERmRatBN7.2
Rnor_6.0672,713,259 - 72,713,442NCBIRnor6.0
Rnor_5.0682,275,916 - 82,276,099UniSTSRnor5.0
RGSC_v3.4672,088,714 - 72,088,897UniSTSRGSC3.4
Celera668,262,350 - 68,262,533UniSTS
RH 3.4 Map6492.0UniSTS
Cytogenetic Map6q22UniSTS
RH132642  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2669,321,910 - 69,322,111 (+)MAPPERmRatBN7.2
Rnor_6.0672,648,696 - 72,648,896NCBIRnor6.0
Rnor_5.0682,211,353 - 82,211,553UniSTSRnor5.0
RGSC_v3.4672,024,151 - 72,024,351UniSTSRGSC3.4
Celera668,197,786 - 68,197,986UniSTS
RH 3.4 Map6492.0UniSTS
Cytogenetic Map6q22UniSTS
RH132672  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map6516.5UniSTS
Cytogenetic Map6q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001419842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC169111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000035309   ⟹   ENSRNOP00000035775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl675,057,226 - 75,155,120 (-)Ensembl
mRatBN7.2 Ensembl669,321,869 - 69,419,773 (-)Ensembl
Rnor_6.0 Ensembl672,648,662 - 72,750,170 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119095   ⟹   ENSRNOP00000091464
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl675,057,226 - 75,155,120 (-)Ensembl
mRatBN7.2 Ensembl669,321,869 - 69,419,773 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000127594   ⟹   ENSRNOP00000108144
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl675,057,226 - 75,155,120 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000134452   ⟹   ENSRNOP00000101861
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl675,057,226 - 75,155,120 (-)Ensembl
RefSeq Acc Id: NM_001419842   ⟹   NP_001406771
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,057,226 - 75,155,120 (-)NCBI
mRatBN7.2669,321,869 - 69,419,774 (-)NCBI
RefSeq Acc Id: XM_039078139   ⟹   XP_038934067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,057,226 - 75,155,184 (-)NCBI
mRatBN7.2669,321,869 - 69,419,847 (-)NCBI
RefSeq Acc Id: XM_039078140   ⟹   XP_038934068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,057,226 - 75,155,207 (-)NCBI
mRatBN7.2669,321,869 - 69,419,861 (-)NCBI
RefSeq Acc Id: XM_039078141   ⟹   XP_038934069
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,057,226 - 75,154,926 (-)NCBI
mRatBN7.2669,321,869 - 69,419,593 (-)NCBI
RefSeq Acc Id: XM_039078142   ⟹   XP_038934070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,057,226 - 75,154,758 (-)NCBI
mRatBN7.2669,321,869 - 69,419,409 (-)NCBI
RefSeq Acc Id: XM_039078143   ⟹   XP_038934071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,057,226 - 75,152,183 (-)NCBI
mRatBN7.2669,321,869 - 69,416,828 (-)NCBI
RefSeq Acc Id: XM_039078144   ⟹   XP_038934072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,057,226 - 75,155,184 (-)NCBI
mRatBN7.2669,321,869 - 69,419,847 (-)NCBI
RefSeq Acc Id: XM_039078145   ⟹   XP_038934073
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,057,226 - 75,155,184 (-)NCBI
mRatBN7.2669,321,869 - 69,419,847 (-)NCBI
RefSeq Acc Id: XM_039078146   ⟹   XP_038934074
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,057,226 - 75,155,184 (-)NCBI
mRatBN7.2669,321,869 - 69,419,847 (-)NCBI
RefSeq Acc Id: XM_039078147   ⟹   XP_038934075
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,057,226 - 75,155,184 (-)NCBI
mRatBN7.2669,321,869 - 69,419,847 (-)NCBI
RefSeq Acc Id: XM_039078149   ⟹   XP_038934077
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,057,226 - 75,155,184 (-)NCBI
mRatBN7.2669,321,869 - 69,419,847 (-)NCBI
RefSeq Acc Id: XM_039078151   ⟹   XP_038934079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,066,113 - 75,155,184 (-)NCBI
mRatBN7.2669,332,721 - 69,419,847 (-)NCBI
RefSeq Acc Id: XM_063262108   ⟹   XP_063118178
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,057,226 - 75,155,207 (-)NCBI
RefSeq Acc Id: XM_063262109   ⟹   XP_063118179
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,057,226 - 75,155,207 (-)NCBI
RefSeq Acc Id: XM_063262110   ⟹   XP_063118180
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,057,226 - 75,155,207 (-)NCBI
RefSeq Acc Id: XM_063262111   ⟹   XP_063118181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8675,060,839 - 75,155,184 (-)NCBI
Ensembl Acc Id: ENSRNOP00000035775   ⟸   ENSRNOT00000035309
RefSeq Acc Id: XP_038934068   ⟸   XM_039078140
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AF96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934077   ⟸   XM_039078149
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AF96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934074   ⟸   XM_039078146
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AF96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934072   ⟸   XM_039078144
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AF96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934075   ⟸   XM_039078147
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AF96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934073   ⟸   XM_039078145
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AF96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934067   ⟸   XM_039078139
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AF96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934069   ⟸   XM_039078141
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AF96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934070   ⟸   XM_039078142
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AF96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934071   ⟸   XM_039078143
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AF96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934079   ⟸   XM_039078151
- Peptide Label: isoform X10
- UniProtKB: A0A8I6AF96 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000091464   ⟸   ENSRNOT00000119095
RefSeq Acc Id: NP_001406771   ⟸   NM_001419842
- UniProtKB: A0A8I6AF96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118180   ⟸   XM_063262110
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AF96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118179   ⟸   XM_063262109
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AF96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118178   ⟸   XM_063262108
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AF96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118181   ⟸   XM_063262111
- Peptide Label: isoform X9
- UniProtKB: A0A8I6AF96 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000108144   ⟸   ENSRNOT00000127594
Ensembl Acc Id: ENSRNOP00000101861   ⟸   ENSRNOT00000134452

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LSK5-F1-model_v2 AlphaFold F1LSK5 1-2041 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694594
Promoter ID:EPDNEW_R5114
Type:initiation region
Name:Heatr5a_1
Description:HEAT repeat containing 5A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0672,750,181 - 72,750,241EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561116 AgrOrtholog
BioCyc Gene G2FUF-37580 BioCyc
Ensembl Genes ENSRNOG00000006483 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035309 ENTREZGENE
  ENSRNOT00000035309.6 UniProtKB/TrEMBL
  ENSRNOT00000119095 ENTREZGENE
  ENSRNOT00000119095.2 UniProtKB/TrEMBL
  ENSRNOT00000127594.1 UniProtKB/TrEMBL
  ENSRNOT00000134452 ENTREZGENE
  ENSRNOT00000134452.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Laa1/Sip1/HEATR5-like_HEAT UniProtKB/TrEMBL
  Laa1/Sip1/HEATR5/SWEETIE UniProtKB/TrEMBL
NCBI Gene 362737 ENTREZGENE
PANTHER HEAT REPEAT-CONTAINING PROTEIN 5A UniProtKB/TrEMBL
  PTHR21663 UniProtKB/TrEMBL
Pfam HEAT_HEATR5A UniProtKB/TrEMBL
  Laa1_Sip1_HTR5 UniProtKB/TrEMBL
PhenoGen Heatr5a PhenoGen
RatGTEx ENSRNOG00000006483 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A8I6AF96 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LG41_RAT UniProtKB/TrEMBL
  A0ABK0LSN8_RAT UniProtKB/TrEMBL
  B5DFM0_RAT UniProtKB/TrEMBL
  F1LSK5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-28 Heatr5a  HEAT repeat containing 5A  RGD1561116_predicted  similar to RIKEN cDNA D930036F22 gene (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1561116_predicted  similar to RIKEN cDNA D930036F22 gene (predicted)  LOC362737  similar to RIKEN cDNA D930036F22 gene  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC362737  similar to RIKEN cDNA D930036F22 gene      Symbol and Name status set to provisional 70820 PROVISIONAL