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Gene: Rbm6 (RNA binding motif protein 6) Rattus norvegicus

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Symbol:

Rbm6

Name:

RNA binding motif protein 6

RGD ID:

1560367

Description:

Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in nucleus. Orthologous to human RBM6 (RNA binding motif protein 6); INTERACTS WITH oxaliplatin; paracetamol; topotecan.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC315997; RGD1560367; RNA-binding protein 6; similar to Rbm6 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RBM6 (RNA binding motif protein 6)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rbm6 (RNA binding motif protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rbm6 (RNA binding motif protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RBM6 (RNA binding motif protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RBM6 (RNA binding motif protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rbm6 (RNA binding motif protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RBM6 (RNA binding motif protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RBM6 (RNA binding motif protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rbm6 (RNA binding motif protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rbm6 (RNA binding motif protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RBM6 (RNA binding motif protein 6)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rbm6 (RNA binding motif protein 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG4887	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	rbm6	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	LOC100498473	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	117,327,607 - 117,431,397 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	117,331,325 - 117,431,397 (-)	Ensembl				GRCr8
mRatBN7.2	8	108,452,687 - 108,552,783 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	108,452,687 - 108,552,771 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	114,079,496 - 114,179,508 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	112,278,658 - 112,378,688 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	110,121,434 - 110,221,461 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	116,535,403 - 116,635,851 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	116,535,403 - 116,635,851 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	115,890,040 - 115,989,943 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	113,027,975 - 113,128,713 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	107,759,022 - 107,858,711 (-)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

17alpha-ethynylestradiol (ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

Aflatoxin B2 alpha (ISO)

antimycin A (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bisphenol A (ISO)

brequinar (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

captan (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

choline (ISO)

chrysene (ISO)

coumarin (ISO)

cyclosporin A (ISO)

deguelin (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

enzyme inhibitor (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

indometacin (ISO)

L-methionine (ISO)

lead(0) (ISO)

methylmercury chloride (ISO)

methylparaben (ISO)

mono(2-ethyl-5-oxohexyl) phthalate (ISO)

N-methyl-N'-nitro-N-nitrosoguanidine (ISO)

nickel atom (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tebufenpyrad (ISO)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

triphenyl phosphate (ISO)

troglitazone (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA splicing, via spliceosome (IBA)

Cellular Component

nucleus (IBA,IEA,ISO)

Molecular Function

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IBA,IEA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11555636	PMID:20716133	PMID:22658674	PMID:22681889

Genomics

Comparative Map Data

Rbm6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	117,327,607 - 117,431,397 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	117,331,325 - 117,431,397 (-)	Ensembl				GRCr8
mRatBN7.2	8	108,452,687 - 108,552,783 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	108,452,687 - 108,552,771 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	114,079,496 - 114,179,508 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	112,278,658 - 112,378,688 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	110,121,434 - 110,221,461 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	116,535,403 - 116,635,851 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	116,535,403 - 116,635,851 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	115,890,040 - 115,989,943 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	113,027,975 - 113,128,713 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	107,759,022 - 107,858,711 (-)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

RBM6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	49,940,150 - 50,077,249 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	49,940,007 - 50,100,045 (+)	Ensembl			hg38	GRCh38
GRCh37	3	49,977,583 - 50,114,682 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	49,952,596 - 50,089,686 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	49,952,595 - 50,089,685	NCBI
Celera	3	49,943,716 - 50,087,548 (+)	NCBI		Celera
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	50,034,632 - 50,170,894 (+)	NCBI		HuRef
CHM1_1	3	49,929,564 - 50,066,750 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	49,969,226 - 50,106,392 (+)	NCBI		T2T-CHM13v2.0

Rbm6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	107,650,758 - 107,751,028 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	107,650,758 - 107,750,436 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	107,773,559 - 107,873,358 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	107,773,559 - 107,873,237 (-)	Ensembl			mm10	GRCm38
MGSCv37	9	107,675,890 - 107,775,150 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	107,631,664 - 107,730,808 (-)	NCBI		MGSCv36	mm8
Celera	9	107,381,354 - 107,481,030 (-)	NCBI		Celera
Cytogenetic Map	9	F1	NCBI

Rbm6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955532	1,811,794 - 1,916,328 (+)	Ensembl
ChiLan1.0	NW_004955532	1,811,794 - 1,914,551 (+)	NCBI	ChiLan1.0	ChiLan1.0

RBM6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	49,926,494 - 50,062,256 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	49,931,303 - 50,067,031 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	49,872,120 - 50,007,835 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	51,135,452 - 51,243,169 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	51,135,198 - 51,243,169 (+)	Ensembl			panPan2	panpan1.1

RBM6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	39,235,301 - 39,359,784 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	39,235,421 - 39,334,107 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	39,156,312 - 39,280,673 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	39,591,976 - 39,716,799 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	39,591,976 - 39,716,743 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	38,959,144 - 39,083,726 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	39,363,478 - 39,488,199 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	39,643,102 - 39,767,491 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rbm6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	64,774,330 - 64,874,536 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936529	1,534,657 - 1,635,071 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936529	1,534,816 - 1,635,012 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBM6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	32,444,963 - 32,569,815 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	32,444,944 - 32,569,818 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	35,625,690 - 35,749,685 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBM6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	11,343,260 - 11,462,390 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	11,343,214 - 11,461,504 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	155,528,101 - 155,651,928 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbm6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624730	3,840,456 - 3,951,643 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rbm6
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	99,095,281 - 99,192,813 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rbm6
980 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	147
Count of miRNA genes:	105
Interacting mature miRNAs:	108
Transcripts:	ENSRNOT00000024939
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	105462581	132782436	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	82352698	127352698	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	61019838	121662124	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	80768445	125768445	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	80768445	125768445	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	70041301	121080908	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	68690349	119799881	Rat
10450865	Bw175	Body weight QTL 175	4.1		total fat pad mass (VT:0015008)	adipose tissue molecular composition measurement (CMO:0000484)	8	84192326	129192326	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	102413464	132782436	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	103375781	129871912	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
634332	Pia18	Pristane induced arthritis QTL 18	4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	84192326	132782436	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	85348065	130348065	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
631217	Activ1	Activity QTL 1	15.9		voluntary movement trait (VT:0003491)	number of photobeam interruptions in an experimental apparatus (CMO:0001517)	8	111249511	117802327	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	98145073	122898010	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	80768445	125768445	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	80768445	125768445	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	91340911	131690273	Rat

Markers in Region

D8Got174

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	108,488,184 - 108,488,380 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	116,570,972 - 116,571,167	NCBI	Rnor6.0
Rnor_5.0	8	115,925,561 - 115,925,756	UniSTS	Rnor5.0
RGSC_v3.4	8	113,063,453 - 113,063,649	RGD	RGSC3.4
RGSC_v3.4	8	113,063,454 - 113,063,649	UniSTS	RGSC3.4
Celera	8	107,794,310 - 107,794,505	UniSTS
RGSC_v3.1	8	113,082,909 - 113,083,104	RGD
RH 3.4 Map	8	1119.2	UniSTS
RH 3.4 Map	8	1119.2	RGD
RH 2.0 Map	8	872.9	RGD
Cytogenetic Map	8	q32	UniSTS

D8Got172

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	108,535,894 - 108,536,039 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	116,618,690 - 116,618,834	NCBI	Rnor6.0
Rnor_5.0	8	115,972,795 - 115,972,939	UniSTS	Rnor5.0
RGSC_v3.4	8	113,111,861 - 113,112,006	RGD	RGSC3.4
RGSC_v3.4	8	113,111,862 - 113,112,006	UniSTS	RGSC3.4
Celera	8	107,841,918 - 107,842,062	UniSTS
RGSC_v3.1	8	113,131,317 - 113,131,461	RGD
RH 3.4 Map	8	1118.2	UniSTS
RH 3.4 Map	8	1118.2	RGD
RH 2.0 Map	8	875.4	RGD
Cytogenetic Map	8	q32	UniSTS

RH134297

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	108,504,383 - 108,504,563 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	116,587,183 - 116,587,362	NCBI	Rnor6.0
Rnor_5.0	8	115,941,288 - 115,941,467	UniSTS	Rnor5.0
RGSC_v3.4	8	113,080,356 - 113,080,535	UniSTS	RGSC3.4
Celera	8	107,810,411 - 107,810,590	UniSTS
RH 3.4 Map	8	1118.1	UniSTS
Cytogenetic Map	8	q32	UniSTS

AU047598

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	108,516,269 - 108,516,535 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	116,599,066 - 116,599,331	NCBI	Rnor6.0
Rnor_5.0	8	115,953,171 - 115,953,436	UniSTS	Rnor5.0
RGSC_v3.4	8	113,092,239 - 113,092,504	UniSTS	RGSC3.4
Celera	8	107,822,294 - 107,822,559	UniSTS
Cytogenetic Map	8	q32	UniSTS

WI-18724

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	108,452,708 - 108,452,837 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	116,535,425 - 116,535,553	NCBI	Rnor6.0
Rnor_5.0	8	115,890,062 - 115,890,190	UniSTS	Rnor5.0
RGSC_v3.4	8	113,027,997 - 113,028,125	UniSTS	RGSC3.4
Celera	8	107,759,044 - 107,759,172	UniSTS
Cytogenetic Map	8	q32	UniSTS

Cfl1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	202,800,003 - 202,800,736 (+)	MAPPER	mRatBN7.2
mRatBN7.2	8	108,490,519 - 108,490,693 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	116,573,307 - 116,573,480	NCBI	Rnor6.0
Rnor_6.0	1	220,872,010 - 220,872,742	NCBI	Rnor6.0
Rnor_5.0	8	115,927,896 - 115,928,069	UniSTS	Rnor5.0
Rnor_5.0	1	227,801,331 - 227,802,063	UniSTS	Rnor5.0
RGSC_v3.4	8	113,065,789 - 113,065,962	UniSTS	RGSC3.4
RGSC_v3.4	1	208,136,081 - 208,136,813	UniSTS	RGSC3.4
Celera	8	107,796,645 - 107,796,818	UniSTS
Celera	1	200,335,480 - 200,336,212	UniSTS
Cytogenetic Map	1	q43	UniSTS
Cytogenetic Map	8	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000024939 ⟹ ENSRNOP00000024939

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	117,331,325 - 117,431,397 (-)	Ensembl
mRatBN7.2 Ensembl	8	108,452,687 - 108,552,771 (-)	Ensembl
Rnor_6.0 Ensembl	8	116,535,403 - 116,635,851 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103192 ⟹ ENSRNOP00000086814

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	117,331,325 - 117,412,621 (-)	Ensembl
mRatBN7.2 Ensembl	8	108,452,687 - 108,533,987 (-)	Ensembl

RefSeq Acc Id:

NM_001108186 ⟹ NP_001101656

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,331,325 - 117,431,397 (-)	NCBI
mRatBN7.2	8	108,452,687 - 108,552,771 (-)	NCBI
Rnor_6.0	8	116,535,403 - 116,635,851 (-)	NCBI
Rnor_5.0	8	115,890,040 - 115,989,943 (-)	NCBI
RGSC_v3.4	8	113,027,975 - 113,128,713 (-)	RGD
Celera	8	107,759,022 - 107,858,711 (-)	RGD

Sequence:

show sequence

GCGGGATTTGCGCCCGTACTTCATCTCCCGGCGGGCCCAGCGCTGAAGGCGGTGGCGCGACGCC
TTTGTGGAAGCCGGAGCCCACCGGGAGGAAGTTCCGGTCTCCGGGACGCTGGGTCCGTGGCGGC
CGCTGAGGAGGAGGAGGAGCGGGCCGCGGGGGCTACGCTGCCTTGGTACTACCCTGCTAGAGTT
TGGTAGGAAAAATATCTACTTACTGAAGCTTTCTTGACATAGAAAGAGATGTGGGGGGATTCTC
GATCTGCTAACAGAACAGGACCTTTTCGTGGGAGCCAAGAAGAAAGGTTTGCTCCCGGGTGGAA
CAGGGACTATCCTCCTCCTCCCCTTAAGAGCCATGCTCAAGAGAGACACCCGGGCAACTTTCCT
GGCAGAGATTCACTTCCCTTTGATTTCCAGGGGCATTCAGGACCTCCCTTTGCAAATGTAGAGG
AGCATTCTTTCAGCTATGGAGCTAGAGATGGACCACACGCTGACTATCAAGGAGGGGAGGGGCC
TGGACACGATTTCAGAGGGGGAGATTTTTCATCTTCGGATTTCCAGAGCAGAGATTCAGCACAG
TTGGACTTCAGGAATAGGGACATACATTCTGGGGATTTTCGGGATAGAGAAGGACCACCTATGG
ACTACAGGGGTGGAGATGGTGCTCCTATAGATTATAGAGGTAGGGAGACACCTCATATAAATTA
CAGAGACAGGGACTCTCATACTGCTGACTTCAGAAGTAGAGATGCTCCTCCATCTGACTTTAGG
GGGCGGGGCGCTTATGATTTAGATTTTAGAGGCCGAGATGGATCCCATGCAGATTTTAGGGGAA
GAGATTTATCAGATTTGGATTTTAGATCCAGAGATCAGTCTCGTTCTGATTTTAGGAACAGGGA
AGTATCTGACTTGGACTTCAGGGATAAAGATGGAGCACAGGTGGACTTCAGAGGCCGAGGTTCG
GCTACTACTGACTTAGACTTTAGGAACAGGGATGCGCCACACTCAGACTTCAGAGGTAGACATC
GTTCTAGGACTTACCAAGATTTTAGGGGCAGAGAGGTAGGACCTTGTATGGAATTTAAAGATAG
AGAAATGCCTCCTGTGGATCCAAAAGTTTTGGATTACATTCAGCCTCCTGCACAAGAGAGAGAA
CATTCTGGTATGAATATGAACAAGAGAGAAGAATCCACACATGACCATACAGTAGAAAGACCCG
CTTTTGGTGTTCAGAAGGGAGAATTTGAGCATTCAGAAACAAGAGAAGGAGAAACACAAAGTGG
AACTTTTGAACATGAATCTCAATCAGACTTTCAAAACAGCCAAAGTCCAGTGCAAGACCAAGAT
AAGCCAAAGCTTTCTGCAGGTGAACAACAGAGTTCAGATGCTGGTCTGTTTAAAGAAGAAGGTG
ATTTGGACTTTCTTGGCCGACAAGACACAGATTACAGAAGCATGGAGTACTGTGATGTGGATCA
CAGGTTGCCAGGAAGCCAGATTTTTGGCTATGGCCAGAGCAAGTCTTTTCCTCAGGGCAAAATG
TCCAGAGATGCCCAACAAGACCTTCAGGATCAAGATTATAGGACTGGCCCAAGTGAGGAGAAAC
CTAACAGGCTTATTCGATTAAATGGGGTGCCAGAAAATGCCACAAAAGAAGAGATTCTTAACGC
CTTTCGGACGTCTGATGGCTTACCTGTAAAGGAGTTGCAGTTGAAGGAGTATAACACAGGTTAC
GACTATGGCTATGTCTGCGTGGAATTTTCACTCTTGGAAGATGCCATCGGATGCATGGAGGCCA
ACCAGGGAACTCTAATGATCCATGACAAAGAAGTCACTCTTGAATATGTACCAAGTCCAGATTT
TTGGTACTGCAAAAGATGTAAGGCCAGCACTGGTGGGCATCAGTCTTGTTGTTCATACTGTAAG
GGCCCAAAGGAAGAAGTCAAGCAAGAACTAGTATCCTATCCTCAACCTCAGAAAACATCCATTC
CAGTACCCTCAGAAAAACAGCCCAACCAGCCACGACCTGTTGATAAGGAGCATGAACTCAGGAA
GCGGGAGGAAGGCCAAGAGTCGAGATTGGGACATCAGAAGAGAGAGACAGAAAGATACTTCCCT
CACTCTCGAAGGGAAGGACTCACTTTCCGAAGAGACCGAGAAAAGGAGTCATGGTCTGGAGAGA
CTCGCCAGGATGGAGAGAGCAAAACAATTATGCTAAAACGTATCTATCGTTCTACTCCACCCGA
AGTGATAGTTGAAGTGCTGGAGCCCTACGTGCATCTCACTACTGCCAATGTCCGTATCATCAAG
AACAGAACTGGCCCTATGGGTCACACTTATGGTTTTATAGACCTCGACTCACATGCAGAAGCTC
TTCGAGTAGTGAAGATTTTGCAGAACCTCGATCCACCGTTTAGCATTGATGGGAAGATGGTAGC
TGTAAACTTGGCCACTGGAAAACGAAGAAATGATTCCGGGGACCACTCTGACCACATGCATTAT
TATCAGGGTAAAAAATATTTCCGAGATAGAAGAGGAGGAAATAGAAATTCAGATTGGTCCTCAG
ATACAAATCGACAAGGGCAGCAGTCATCATCTGACTGCTACATATATGATTCTGCTACTGGCTA
CTATTATGACCCCTTGGCAGGAACTTACTATGACCCCAACACCCAGCAAGAAGTCTATGTGCCC
CAGGACCCTGAGTCACCTGAGGAAGAAGAGATCAAGGAAAAGAAATCTACCAGTCAAGGAAAGT
CAAATAGCAAGAAGGAAACATCTAAAAGAGATGGCAAGGAGAAAAAAGACAGAGGAGTGACAAA
GTTTCAAGAAAGTACCAGTGAGGGGAAGCCTCCCCCAGAAGATGTTTTTAAGAAGCCCCTGCCT
CCTACTGTGAAAAAGGAAGAGAGTCCTCCTCCTCCTAAGGTGGTAAATCCATTAATTGGTCTCC
TGGGTGAATATGGAGGAGACAGTGACTATGAGGAAGAAGAGGAAGAGGAGCAGGCCCCTCCTGT
GCAGCCTCGAGCAGCACAGCCTCAGCCTCGAGAGGAGCTGACCAAGAAAGAGAATGAAGAAGAC
AAACTCACAGACTGGAATAAACTGGCTTGTCTGCTCTGCAGAAGGCAGTTTCCCAATAAAGAAG
TTCTTACAAAGCATCAGCAACTCTCAGACCTGCACAAGCAAAACCTGGAAATTCACCGGAAAAT
AAAACAATCAGAGCAAGAGCTAGCCTATCTGGAGAGGAGAGAACGGGAGGGAAGGTTTAAAGAA
AAAGGAAGTGACCGAAGGGAAAAACTACAGTCTTTTGATTCTCCAGAAAGGAAACGGATTAAAT
ACTCCAGGGAAACAGACAGTGATCGAAACCCTGTTGATAAAGAAGACACTGACACTAGTAGCAA
AGGAGGCTGCACCCAGCAGGCTACTGGCTGGAGGAAAGGGGCAGGCCTGGGATATAGCCATCCT
GGATTGGGTTCATCAGAGGAGATTGAAGGGCGGATGAGGGGGTCTGGGGGTGCCCCAGGAAGAA
CCAGCAAGAGACAGTCTAATGAAACTTACAGAGATGCTGTTCGAAGAGTTATGTTTGCTCGATA
CAAAGAACTCGATTAAGAGTGGAAATACCCCACAGGATACAATTTCCTCTTTGTTTTGTTTGTC
CATCTCTCCTTTTGTTTTGTTACTGTTCTTGCTGCTAGAACTTTTTTAAATAAACTTTTTTCAA
TGTGAATAA

hide sequence

RefSeq Acc Id:

XM_006243780 ⟹ XP_006243842

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,327,607 - 117,431,363 (-)	NCBI
mRatBN7.2	8	108,452,690 - 108,552,783 (-)	NCBI
Rnor_6.0	8	116,535,406 - 116,635,841 (-)	NCBI
Rnor_5.0	8	115,890,040 - 115,989,943 (-)	NCBI

Sequence:

show sequence

CGCCCGTACTTCATCTCCCGGCGGGCCCAGCGCTGAAGGCGGTGGCGCGACGCCTTTGTGGAAG
CCGGAGCCCACCGGGAGGAAGTTCCGGTCTCCGGGACGCTGGGTCCGTGGCGGCCGCTGAGGAG
GAGGAGGAGCGGGCCGCGGGGGCTACGCTGCCTTGGAAACCCTTATAAATCCATGAAGACCTTT
CAGTAGCTACAAGAAAAGTCCTGGAGATAAGTTCTCAGCTTCATTTAGGTTACATGCCTGTCTT
CAAAGCAATCACTGGTACTACCCTGCTAGAGTTTGGTAGGAAAAATATCTACTTACTGAAGCTT
TCTTGACATAGAAAGAGATGTGGGGGGATTCTCGATCTGCTAACAGAACAGGACCTTTTCGTGG
GAGCCAAGAAGAAAGGTTTGCTCCCGGGTGGAACAGGGACTATCCTCCTCCTCCCCTTAAGAGC
CATGCTCAAGAGAGACACCCGGGCAACTTTCCTGGCAGAGATTCACTTCCCTTTGATTTCCAGG
GGCATTCAGGACCTCCCTTTGCAAATGTAGAGGAGCATTCTTTCAGCTATGGAGCTAGAGATGG
ACCACACGCTGACTATCAAGGAGGGGAGGGGCCTGGACACGATTTCAGAGGGGGAGATTTTTCA
TCTTCGGATTTCCAGAGCAGAGATTCAGCACAGTTGGACTTCAGGAATAGGGACATACATTCTG
GGGATTTTCGGGATAGAGAAGGACCACCTATGGACTACAGGGGTGGAGATGGTGCTCCTATAGA
TTATAGAGGTAGGGAGACACCTCATATAAATTACAGAGACAGGGACTCTCATACTGCTGACTTC
AGAAGTAGAGATGCTCCTCCATCTGACTTTAGGGGGCGGGGCGCTTATGATTTAGATTTTAGAG
GCCGAGATGGATCCCATGCAGATTTTAGGGGAAGAGATTTATCAGATTTGGATTTTAGATCCAG
AGATCAGTCTCGTTCTGATTTTAGGAACAGGGAAGTATCTGACTTGGACTTCAGGGATAAAGAT
GGAGCACAGGTGGACTTCAGAGGCCGAGGTTCGGCTACTACTGACTTAGACTTTAGGAACAGGG
ATGCGCCACACTCAGACTTCAGAGGTAGACATCGTTCTAGGACTTACCAAGATTTTAGGGGCAG
AGAGGTAGGACCTTGTATGGAATTTAAAGATAGAGAAATGCCTCCTGTGGATCCAAAAGTTTTG
GATTACATTCAGCCTCCTGCACAAGAGAGAGAACATTCTGGTATGAATATGAACAAGAGAGAAG
AATCCACACATGACCATACAGTAGAAAGACCCGCTTTTGGTGTTCAGAAGGGAGAATTTGAGCA
TTCAGAAACAAGAGAAGGAGAAACACAAAGTGGAACTTTTGAACATGAATCTCAATCAGACTTT
CAAAACAGCCAAAGTCCAGTGCAAGACCAAGATAAGCCAAAGCTTTCTGCAGGTGAACAACAGA
GTTCAGATGCTGGTCTGTTTAAAGAAGAAGGTGATTTGGACTTTCTTGGCCGACAAGACACAGA
TTACAGAAGCATGGAGTACTGTGATGTGGATCACAGGTTGCCAGGAAGCCAGATTTTTGGCTAT
GGCCAGAGCAAGTCTTTTCCTCAGGGCAAAATGTCCAGAGATGCCCAACAAGACCTTCAGGATC
AAGATTATAGGACTGGCCCAAGTGAGGAGAAACCTAACAGGCTTATTCGATTAAATGGGGTGCC
AGAAAATGCCACAAAAGAAGAGATTCTTAACGCCTTTCGGACGTCTGATGGCTTACCTGTAAAG
GAGTTGCAGTTGAAGGAGTATAACACAGGTTACGACTATGGCTATGTCTGCGTGGAATTTTCAC
TCTTGGAAGATGCCATCGGATGCATGGAGGCCAACCAGGGAACTCTAATGATCCATGACAAAGA
AGTCACTCTTGAATATGTACCAAGTCCAGATTTTTGGTACTGCAAAAGATGTAAGGCCAGCACT
GGTGGGCATCAGTCTTGTTGTTCATACTGTAAGGGCCCAAAGGAAGAAGTCAAGCAAGAACTAG
TATCCTATCCTCAACCTCAGAAAACATCCATTCCAGTACCCTCAGAAAAACAGCCCAACCAGCC
ACGACCTGTTGATAAGGAGCATGAACTCAGGAAGCGGGAGGAAGGCCAAGAGTCGAGATTGGGA
CATCAGAAGAGAGAGACAGAAAGATACTTCCCTCACTCTCGAAGGGAAGGACTCACTTTCCGAA
GAGACCGAGAAAAGGAGTCATGGTCTGGAGAGACTCGCCAGGATGGAGAGAGCAAAACAATTAT
GCTAAAACGTATCTATCGTTCTACTCCACCCGAAGTGATAGTTGAAGTGCTGGAGCCCTACGTG
CATCTCACTACTGCCAATGTCCGTATCATCAAGAACAGAACTGGCCCTATGGGTCACACTTATG
GTTTTATAGACCTCGACTCACATGCAGAAGCTCTTCGAGTAGTGAAGATTTTGCAGAACCTCGA
TCCACCGTTTAGCATTGATGGGAAGATGGTAGCTGTAAACTTGGCCACTGGAAAACGAAGAAAT
GATTCCGGGGACCACTCTGACCACATGCATTATTATCAGGGTAAAAAATATTTCCGAGATAGAA
GAGGAGGAAATAGAAATTCAGATTGGTCCTCAGATACAAATCGACAAGGGCAGCAGTCATCATC
TGACTGCTACATATATGATTCTGCTACTGGCTACTATTATGACCCCTTGGCAGGAACTTACTAT
GACCCCAACACCCAGCAAGAAGTCTATGTGCCCCAGGACCCTGAGTCACCTGAGGAAGAAGAGA
TCAAGGAAAAGAAATCTACCAGTCAAGGAAAGTCAAATAGCAAGAAGGAAACATCTAAAAGAGA
TGGCAAGGAGAAAAAAGACAGAGGAGTGACAAAGTTTCAAGAAAGTACCAGTGAGGGGAAGCCT
CCCCCAGAAGATGTTTTTAAGAAGCCCCTGCCTCCTACTGTGAAAAAGGAAGAGAGTCCTCCTC
CTCCTAAGGTGGTAAATCCATTAATTGGTCTCCTGGGTGAATATGGAGGAGACAGTGACTATGA
GGAAGAAGAGGAAGAGGAGCAGGCCCCTCCTGTGCAGCCTCGAGCAGCACAGCCTCAGCCTCGA
GAGGAGCTGACCAAGAAAGAGAATGAAGAAGACAAACTCACAGACTGGAATAAACTGGCTTGTC
TGCTCTGCAGAAGGCAGTTTCCCAATAAAGAAGTTCTTACAAAGCATCAGCAACTCTCAGACCT
GCACAAGCAAAACCTGGAAATTCACCGGAAAATAAAACAATCAGAGCAAGAGCTAGCCTATCTG
GAGAGGAGAGAACGGGAGGGAAGGTTTAAAGAAAAAGGAAGTGACCGAAGGGAAAAACTACAGT
CTTTTGATTCTCCAGAAAGGAAACGGATTAAATACTCCAGGGAAACAGACAGTGATCGAAACCC
TGTTGATAAAGAAGACACTGACACTAGTAGCAAAGGAGGCTGCACCCAGCAGGCTACTGGCTGG
AGGAAAGGGGCAGGCCTGGGATATAGCCATCCTGGATTGGGTTCATCAGAGGAGATTGAAGGGC
GGATGAGGGGGTCTGGGGGTGCCCCAGGAAGAACCAGCAAGAGACAGTCTAATGAAACTTACAG
AGATGCTGTTCGAAGAGTTATGTTTGCTCGATACAAAGAACTCGATTAAGAGTGGAAATACCCC
ACAGGATACAATTTCCTCTTTGTTTTGTTTGTCCATCTCTCCTTTTGTTTTGTTACTGTTCTTG
CTGCTAGAACTTTTTTAAATAAACTTTTTTCAATGTGAA

hide sequence

RefSeq Acc Id:

XM_006243781 ⟹ XP_006243843

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,327,607 - 117,431,071 (-)	NCBI
mRatBN7.2	8	108,452,690 - 108,552,583 (-)	NCBI
Rnor_6.0	8	116,535,406 - 116,635,672 (-)	NCBI
Rnor_5.0	8	115,890,040 - 115,989,943 (-)	NCBI

Sequence:

show sequence

GCCCAGGATACGAGAGAGGGCGTGCCCGAGCTGCTGGGATAGGGTCAGCGGTCCGGGCGGCTCT
GGTAATCGTCGGCCCGCGCGGCCTAGGAGTCGTGACTTCGAAGACACGGGGCTGCTGCGGCCTC
GCTCGCGAAGACAGCCTAGCGGTGGTGTGTTGAGGGAGGCGCCGCTCGCGGCAGGAACGCCCCG
GAACGGTCGCGGGCCCGGGGCGGGGCCCGAGGCGGCCGTAGAATTACCGGTCCCACCGCGGAGC
GGCCAGCTGTGGGGCCAGCGACCTGCGCGTGGTAGCGGTTCCGGCGCTCAGTTCTGTGGAGCTG
CAGGAGGGATTTCTTTTTCTTTCCCCTTCTATTTGTGATCCCGTTCTGAGACATCACTAGATAC
GGAGTTCTTGTGCCCTGCAAGTAACCTTGGCCGCCCACCCAGACACCCAGACAGGAAGGTACTA
CCCTGCTAGAGTTTGGTAGGAAAAATATCTACTTACTGAAGCTTTCTTGACATAGAAAGAGATG
TGGGGGGATTCTCGATCTGCTAACAGAACAGGACCTTTTCGTGGGAGCCAAGAAGAAAGGTTTG
CTCCCGGGTGGAACAGGGACTATCCTCCTCCTCCCCTTAAGAGCCATGCTCAAGAGAGACACCC
GGGCAACTTTCCTGGCAGAGATTCACTTCCCTTTGATTTCCAGGGGCATTCAGGACCTCCCTTT
GCAAATGTAGAGGAGCATTCTTTCAGCTATGGAGCTAGAGATGGACCACACGCTGACTATCAAG
GAGGGGAGGGGCCTGGACACGATTTCAGAGGGGGAGATTTTTCATCTTCGGATTTCCAGAGCAG
AGATTCAGCACAGTTGGACTTCAGGAATAGGGACATACATTCTGGGGATTTTCGGGATAGAGAA
GGACCACCTATGGACTACAGGGGTGGAGATGGTGCTCCTATAGATTATAGAGGTAGGGAGACAC
CTCATATAAATTACAGAGACAGGGACTCTCATACTGCTGACTTCAGAAGTAGAGATGCTCCTCC
ATCTGACTTTAGGGGGCGGGGCGCTTATGATTTAGATTTTAGAGGCCGAGATGGATCCCATGCA
GATTTTAGGGGAAGAGATTTATCAGATTTGGATTTTAGATCCAGAGATCAGTCTCGTTCTGATT
TTAGGAACAGGGAAGTATCTGACTTGGACTTCAGGGATAAAGATGGAGCACAGGTGGACTTCAG
AGGCCGAGGTTCGGCTACTACTGACTTAGACTTTAGGAACAGGGATGCGCCACACTCAGACTTC
AGAGGTAGACATCGTTCTAGGACTTACCAAGATTTTAGGGGCAGAGAGGTAGGACCTTGTATGG
AATTTAAAGATAGAGAAATGCCTCCTGTGGATCCAAAAGTTTTGGATTACATTCAGCCTCCTGC
ACAAGAGAGAGAACATTCTGGTATGAATATGAACAAGAGAGAAGAATCCACACATGACCATACA
GTAGAAAGACCCGCTTTTGGTGTTCAGAAGGGAGAATTTGAGCATTCAGAAACAAGAGAAGGAG
AAACACAAAGTGGAACTTTTGAACATGAATCTCAATCAGACTTTCAAAACAGCCAAAGTCCAGT
GCAAGACCAAGATAAGCCAAAGCTTTCTGCAGGTGAACAACAGAGTTCAGATGCTGGTCTGTTT
AAAGAAGAAGGTGATTTGGACTTTCTTGGCCGACAAGACACAGATTACAGAAGCATGGAGTACT
GTGATGTGGATCACAGGTTGCCAGGAAGCCAGATTTTTGGCTATGGCCAGAGCAAGTCTTTTCC
TCAGGGCAAAATGTCCAGAGATGCCCAACAAGACCTTCAGGATCAAGATTATAGGACTGGCCCA
AGTGAGGAGAAACCTAACAGGCTTATTCGATTAAATGGGGTGCCAGAAAATGCCACAAAAGAAG
AGATTCTTAACGCCTTTCGGACGTCTGATGGCTTACCTGTAAAGGAGTTGCAGTTGAAGGAGTA
TAACACAGGTTACGACTATGGCTATGTCTGCGTGGAATTTTCACTCTTGGAAGATGCCATCGGA
TGCATGGAGGCCAACCAGGGAACTCTAATGATCCATGACAAAGAAGTCACTCTTGAATATGTAC
CAAGTCCAGATTTTTGGTACTGCAAAAGATGTAAGGCCAGCACTGGTGGGCATCAGTCTTGTTG
TTCATACTGTAAGGGCCCAAAGGAAGAAGTCAAGCAAGAACTAGTATCCTATCCTCAACCTCAG
AAAACATCCATTCCAGTACCCTCAGAAAAACAGCCCAACCAGCCACGACCTGTTGATAAGGAGC
ATGAACTCAGGAAGCGGGAGGAAGGCCAAGAGTCGAGATTGGGACATCAGAAGAGAGAGACAGA
AAGATACTTCCCTCACTCTCGAAGGGAAGGACTCACTTTCCGAAGAGACCGAGAAAAGGAGTCA
TGGTCTGGAGAGACTCGCCAGGATGGAGAGAGCAAAACAATTATGCTAAAACGTATCTATCGTT
CTACTCCACCCGAAGTGATAGTTGAAGTGCTGGAGCCCTACGTGCATCTCACTACTGCCAATGT
CCGTATCATCAAGAACAGAACTGGCCCTATGGGTCACACTTATGGTTTTATAGACCTCGACTCA
CATGCAGAAGCTCTTCGAGTAGTGAAGATTTTGCAGAACCTCGATCCACCGTTTAGCATTGATG
GGAAGATGGTAGCTGTAAACTTGGCCACTGGAAAACGAAGAAATGATTCCGGGGACCACTCTGA
CCACATGCATTATTATCAGGGTAAAAAATATTTCCGAGATAGAAGAGGAGGAAATAGAAATTCA
GATTGGTCCTCAGATACAAATCGACAAGGGCAGCAGTCATCATCTGACTGCTACATATATGATT
CTGCTACTGGCTACTATTATGACCCCTTGGCAGGAACTTACTATGACCCCAACACCCAGCAAGA
AGTCTATGTGCCCCAGGACCCTGAGTCACCTGAGGAAGAAGAGATCAAGGAAAAGAAATCTACC
AGTCAAGGAAAGTCAAATAGCAAGAAGGAAACATCTAAAAGAGATGGCAAGGAGAAAAAAGACA
GAGGAGTGACAAAGTTTCAAGAAAGTACCAGTGAGGGGAAGCCTCCCCCAGAAGATGTTTTTAA
GAAGCCCCTGCCTCCTACTGTGAAAAAGGAAGAGAGTCCTCCTCCTCCTAAGGTGGTAAATCCA
TTAATTGGTCTCCTGGGTGAATATGGAGGAGACAGTGACTATGAGGAAGAAGAGGAAGAGGAGC
AGGCCCCTCCTGTGCAGCCTCGAGCAGCACAGCCTCAGCCTCGAGAGGAGCTGACCAAGAAAGA
GAATGAAGAAGACAAACTCACAGACTGGAATAAACTGGCTTGTCTGCTCTGCAGAAGGCAGTTT
CCCAATAAAGAAGTTCTTACAAAGCATCAGCAACTCTCAGACCTGCACAAGCAAAACCTGGAAA
TTCACCGGAAAATAAAACAATCAGAGCAAGAGCTAGCCTATCTGGAGAGGAGAGAACGGGAGGG
AAGGTTTAAAGAAAAAGGAAGTGACCGAAGGGAAAAACTACAGTCTTTTGATTCTCCAGAAAGG
AAACGGATTAAATACTCCAGGGAAACAGACAGTGATCGAAACCCTGTTGATAAAGAAGACACTG
ACACTAGTAGCAAAGGAGGCTGCACCCAGCAGGCTACTGGCTGGAGGAAAGGGGCAGGCCTGGG
ATATAGCCATCCTGGATTGGGTTCATCAGAGGAGATTGAAGGGCGGATGAGGGGGTCTGGGGGT
GCCCCAGGAAGAACCAGCAAGAGACAGTCTAATGAAACTTACAGAGATGCTGTTCGAAGAGTTA
TGTTTGCTCGATACAAAGAACTCGATTAAGAGTGGAAATACCCCACAGGATACAATTTCCTCTT
TGTTTTGTTTGTCCATCTCTCCTTTTGTTTTGTTACTGTTCTTGCTGCTAGAACTTTTTTAAAT
AAACTTTTTTCAATGTGAA

hide sequence

RefSeq Acc Id:

XM_008766535 ⟹ XP_008764757

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,327,607 - 117,361,147 (-)	NCBI
mRatBN7.2	8	108,452,690 - 108,482,548 (-)	NCBI
Rnor_6.0	8	116,535,406 - 116,565,300 (-)	NCBI

Sequence:

show sequence

CAGAGCCCTGTCTGAGGAGACACAGAGGACCCTAGAGGGCGGAGAGTGAACACAGCGCAGGGGC
TAGTTCCAGAGTCGCACCTTCGGGAACTCTAATGATCCATGACAAAGAAGTCACTCTTGAATAT
GTACCAAGTCCAGATTTTTGGTACTGCAAAAGATGTAAGGCCAGCACTGGTGGGCATCAGTCTT
GTTGTTCATACTGTAAGGGCCCAAAGGAAGAAGTCAAGCAAGAACTAGTATCCTATCCTCAACC
TCAGAAAACATCCATTCCAGTACCCTCAGAAAAACAGCCCAACCAGCCACGACCTGTTGATAAG
GAGCATGAACTCAGGAAGCGGGAGGAAGGCCAAGAGTCGAGATTGGGACATCAGAAGAGAGAGA
CAGAAAGATACTTCCCTCACTCTCGAAGGGAAGGACTCACTTTCCGAAGAGACCGAGAAAAGGA
GTCATGGTCTGGAGAGACTCGCCAGGATGGAGAGAGCAAAACAATTATGCTAAAACGTATCTAT
CGTTCTACTCCACCCGAAGTGATAGTTGAAGTGCTGGAGCCCTACGTGCATCTCACTACTGCCA
ATGTCCGTATCATCAAGAACAGAACTGGCCCTATGGGTCACACTTATGGTTTTATAGACCTCGA
CTCACATGCAGAAGCTCTTCGAGTAGTGAAGATTTTGCAGAACCTCGATCCACCGTTTAGCATT
GATGGGAAGATGGTAGCTGTAAACTTGGCCACTGGAAAACGAAGAAATGATTCCGGGGACCACT
CTGACCACATGCATTATTATCAGGGTAAAAAATATTTCCGAGATAGAAGAGGAGGAAATAGAAA
TTCAGATTGGTCCTCAGATACAAATCGACAAGGGCAGCAGTCATCATCTGACTGCTACATATAT
GATTCTGCTACTGGCTACTATTATGACCCCTTGGCAGGAACTTACTATGACCCCAACACCCAGC
AAGAAGTCTATGTGCCCCAGGACCCTGAGTCACCTGAGGAAGAAGAGATCAAGGAAAAGAAATC
TACCAGTCAAGGAAAGTCAAATAGCAAGAAGGAAACATCTAAAAGAGATGGCAAGGAGAAAAAA
GACAGAGGAGTGACAAAGTTTCAAGAAAGTACCAGTGAGGGGAAGCCTCCCCCAGAAGATGTTT
TTAAGAAGCCCCTGCCTCCTACTGTGAAAAAGGAAGAGAGTCCTCCTCCTCCTAAGGTGGTAAA
TCCATTAATTGGTCTCCTGGGTGAATATGGAGGAGACAGTGACTATGAGGAAGAAGAGGAAGAG
GAGCAGGCCCCTCCTGTGCAGCCTCGAGCAGCACAGCCTCAGCCTCGAGAGGAGCTGACCAAGA
AAGAGAATGAAGAAGACAAACTCACAGACTGGAATAAACTGGCTTGTCTGCTCTGCAGAAGGCA
GTTTCCCAATAAAGAAGTTCTTACAAAGCATCAGCAACTCTCAGACCTGCACAAGCAAAACCTG
GAAATTCACCGGAAAATAAAACAATCAGAGCAAGAGCTAGCCTATCTGGAGAGGAGAGAACGGG
AGGGAAGGTTTAAAGAAAAAGGAAGTGACCGAAGGGAAAAACTACAGTCTTTTGATTCTCCAGA
AAGGAAACGGATTAAATACTCCAGGGAAACAGACAGTGATCGAAACCCTGTTGATAAAGAAGAC
ACTGACACTAGTAGCAAAGGAGGCTGCACCCAGCAGGCTACTGGCTGGAGGAAAGGGGCAGGCC
TGGGATATAGCCATCCTGGATTGGGTTCATCAGAGGAGATTGAAGGGCGGATGAGGGGGTCTGG
GGGTGCCCCAGGAAGAACCAGCAAGAGACAGTCTAATGAAACTTACAGAGATGCTGTTCGAAGA
GTTATGTTTGCTCGATACAAAGAACTCGATTAAGAGTGGAAATACCCCACAGGATACAATTTCC
TCTTTGTTTTGTTTGTCCATCTCTCCTTTTGTTTTGTTACTGTTCTTGCTGCTAGAACTTTTTT
AAATAAACTTTTTTCAATGTGAA

hide sequence

RefSeq Acc Id:

XM_039081594 ⟹ XP_038937522

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,327,607 - 117,431,363 (-)	NCBI
mRatBN7.2	8	108,452,690 - 108,552,780 (-)	NCBI

RefSeq Acc Id:

XM_039081595 ⟹ XP_038937523

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,327,607 - 117,409,292 (-)	NCBI
mRatBN7.2	8	108,452,690 - 108,530,635 (-)	NCBI

RefSeq Acc Id:

XM_063265628 ⟹ XP_063121698

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,327,607 - 117,431,363 (-)	NCBI

RefSeq Acc Id:

XM_063265629 ⟹ XP_063121699

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,327,607 - 117,431,363 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101656	(Get FASTA)	NCBI Sequence Viewer
	XP_006243842	(Get FASTA)	NCBI Sequence Viewer
	XP_006243843	(Get FASTA)	NCBI Sequence Viewer
	XP_008764757	(Get FASTA)	NCBI Sequence Viewer
	XP_038937522	(Get FASTA)	NCBI Sequence Viewer
	XP_038937523	(Get FASTA)	NCBI Sequence Viewer
	XP_063121698	(Get FASTA)	NCBI Sequence Viewer
	XP_063121699	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL77214	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000024939
	ENSRNOP00000024939.5
	ENSRNOP00000086814.1

RefSeq Acc Id:

NP_001101656 ⟸ NM_001108186

- UniProtKB:

D4ACW0 (UniProtKB/TrEMBL), A6I311 (UniProtKB/TrEMBL), A0A8I6A326 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MWGDSRSANRTGPFRGSQEERFAPGWNRDYPPPPLKSHAQERHPGNFPGRDSLPFDFQGHSGPP
FANVEEHSFSYGARDGPHADYQGGEGPGHDFRGGDFSSSDFQSRDSAQLDFRNRDIHSGDFRDR
EGPPMDYRGGDGAPIDYRGRETPHINYRDRDSHTADFRSRDAPPSDFRGRGAYDLDFRGRDGSH
ADFRGRDLSDLDFRSRDQSRSDFRNREVSDLDFRDKDGAQVDFRGRGSATTDLDFRNRDAPHSD
FRGRHRSRTYQDFRGREVGPCMEFKDREMPPVDPKVLDYIQPPAQEREHSGMNMNKREESTHDH
TVERPAFGVQKGEFEHSETREGETQSGTFEHESQSDFQNSQSPVQDQDKPKLSAGEQQSSDAGL
FKEEGDLDFLGRQDTDYRSMEYCDVDHRLPGSQIFGYGQSKSFPQGKMSRDAQQDLQDQDYRTG
PSEEKPNRLIRLNGVPENATKEEILNAFRTSDGLPVKELQLKEYNTGYDYGYVCVEFSLLEDAI
GCMEANQGTLMIHDKEVTLEYVPSPDFWYCKRCKASTGGHQSCCSYCKGPKEEVKQELVSYPQP
QKTSIPVPSEKQPNQPRPVDKEHELRKREEGQESRLGHQKRETERYFPHSRREGLTFRRDREKE
SWSGETRQDGESKTIMLKRIYRSTPPEVIVEVLEPYVHLTTANVRIIKNRTGPMGHTYGFIDLD
SHAEALRVVKILQNLDPPFSIDGKMVAVNLATGKRRNDSGDHSDHMHYYQGKKYFRDRRGGNRN
SDWSSDTNRQGQQSSSDCYIYDSATGYYYDPLAGTYYDPNTQQEVYVPQDPESPEEEEIKEKKS
TSQGKSNSKKETSKRDGKEKKDRGVTKFQESTSEGKPPPEDVFKKPLPPTVKKEESPPPPKVVN
PLIGLLGEYGGDSDYEEEEEEEQAPPVQPRAAQPQPREELTKKENEEDKLTDWNKLACLLCRRQ
FPNKEVLTKHQQLSDLHKQNLEIHRKIKQSEQELAYLERREREGRFKEKGSDRREKLQSFDSPE
RKRIKYSRETDSDRNPVDKEDTDTSSKGGCTQQATGWRKGAGLGYSHPGLGSSEEIEGRMRGSG
GAPGRTSKRQSNETYRDAVRRVMFARYKELD

hide sequence

RefSeq Acc Id:	XP_006243842 ⟸ XM_006243780
- Peptide Label:	isoform X1
- UniProtKB:	D4ACW0 (UniProtKB/TrEMBL), A6I311 (UniProtKB/TrEMBL), A0A8I6A326 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWGDSRSANRTGPFRGSQEERFAPGWNRDYPPPPLKSHAQERHPGNFPGRDSLPFDFQGHSGPP FANVEEHSFSYGARDGPHADYQGGEGPGHDFRGGDFSSSDFQSRDSAQLDFRNRDIHSGDFRDR EGPPMDYRGGDGAPIDYRGRETPHINYRDRDSHTADFRSRDAPPSDFRGRGAYDLDFRGRDGSH ADFRGRDLSDLDFRSRDQSRSDFRNREVSDLDFRDKDGAQVDFRGRGSATTDLDFRNRDAPHSD FRGRHRSRTYQDFRGREVGPCMEFKDREMPPVDPKVLDYIQPPAQEREHSGMNMNKREESTHDH TVERPAFGVQKGEFEHSETREGETQSGTFEHESQSDFQNSQSPVQDQDKPKLSAGEQQSSDAGL FKEEGDLDFLGRQDTDYRSMEYCDVDHRLPGSQIFGYGQSKSFPQGKMSRDAQQDLQDQDYRTG PSEEKPNRLIRLNGVPENATKEEILNAFRTSDGLPVKELQLKEYNTGYDYGYVCVEFSLLEDAI GCMEANQGTLMIHDKEVTLEYVPSPDFWYCKRCKASTGGHQSCCSYCKGPKEEVKQELVSYPQP QKTSIPVPSEKQPNQPRPVDKEHELRKREEGQESRLGHQKRETERYFPHSRREGLTFRRDREKE SWSGETRQDGESKTIMLKRIYRSTPPEVIVEVLEPYVHLTTANVRIIKNRTGPMGHTYGFIDLD SHAEALRVVKILQNLDPPFSIDGKMVAVNLATGKRRNDSGDHSDHMHYYQGKKYFRDRRGGNRN SDWSSDTNRQGQQSSSDCYIYDSATGYYYDPLAGTYYDPNTQQEVYVPQDPESPEEEEIKEKKS TSQGKSNSKKETSKRDGKEKKDRGVTKFQESTSEGKPPPEDVFKKPLPPTVKKEESPPPPKVVN PLIGLLGEYGGDSDYEEEEEEEQAPPVQPRAAQPQPREELTKKENEEDKLTDWNKLACLLCRRQ FPNKEVLTKHQQLSDLHKQNLEIHRKIKQSEQELAYLERREREGRFKEKGSDRREKLQSFDSPE RKRIKYSRETDSDRNPVDKEDTDTSSKGGCTQQATGWRKGAGLGYSHPGLGSSEEIEGRMRGSG GAPGRTSKRQSNETYRDAVRRVMFARYKELD hide sequence

RefSeq Acc Id:	XP_006243843 ⟸ XM_006243781
- Peptide Label:	isoform X1
- UniProtKB:	D4ACW0 (UniProtKB/TrEMBL), A6I311 (UniProtKB/TrEMBL), A0A8I6A326 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWGDSRSANRTGPFRGSQEERFAPGWNRDYPPPPLKSHAQERHPGNFPGRDSLPFDFQGHSGPP FANVEEHSFSYGARDGPHADYQGGEGPGHDFRGGDFSSSDFQSRDSAQLDFRNRDIHSGDFRDR EGPPMDYRGGDGAPIDYRGRETPHINYRDRDSHTADFRSRDAPPSDFRGRGAYDLDFRGRDGSH ADFRGRDLSDLDFRSRDQSRSDFRNREVSDLDFRDKDGAQVDFRGRGSATTDLDFRNRDAPHSD FRGRHRSRTYQDFRGREVGPCMEFKDREMPPVDPKVLDYIQPPAQEREHSGMNMNKREESTHDH TVERPAFGVQKGEFEHSETREGETQSGTFEHESQSDFQNSQSPVQDQDKPKLSAGEQQSSDAGL FKEEGDLDFLGRQDTDYRSMEYCDVDHRLPGSQIFGYGQSKSFPQGKMSRDAQQDLQDQDYRTG PSEEKPNRLIRLNGVPENATKEEILNAFRTSDGLPVKELQLKEYNTGYDYGYVCVEFSLLEDAI GCMEANQGTLMIHDKEVTLEYVPSPDFWYCKRCKASTGGHQSCCSYCKGPKEEVKQELVSYPQP QKTSIPVPSEKQPNQPRPVDKEHELRKREEGQESRLGHQKRETERYFPHSRREGLTFRRDREKE SWSGETRQDGESKTIMLKRIYRSTPPEVIVEVLEPYVHLTTANVRIIKNRTGPMGHTYGFIDLD SHAEALRVVKILQNLDPPFSIDGKMVAVNLATGKRRNDSGDHSDHMHYYQGKKYFRDRRGGNRN SDWSSDTNRQGQQSSSDCYIYDSATGYYYDPLAGTYYDPNTQQEVYVPQDPESPEEEEIKEKKS TSQGKSNSKKETSKRDGKEKKDRGVTKFQESTSEGKPPPEDVFKKPLPPTVKKEESPPPPKVVN PLIGLLGEYGGDSDYEEEEEEEQAPPVQPRAAQPQPREELTKKENEEDKLTDWNKLACLLCRRQ FPNKEVLTKHQQLSDLHKQNLEIHRKIKQSEQELAYLERREREGRFKEKGSDRREKLQSFDSPE RKRIKYSRETDSDRNPVDKEDTDTSSKGGCTQQATGWRKGAGLGYSHPGLGSSEEIEGRMRGSG GAPGRTSKRQSNETYRDAVRRVMFARYKELD hide sequence

RefSeq Acc Id:

XP_008764757 ⟸ XM_008766535

- Peptide Label:

isoform X3

- Sequence:

show sequence

MIHDKEVTLEYVPSPDFWYCKRCKASTGGHQSCCSYCKGPKEEVKQELVSYPQPQKTSIPVPSE
KQPNQPRPVDKEHELRKREEGQESRLGHQKRETERYFPHSRREGLTFRRDREKESWSGETRQDG
ESKTIMLKRIYRSTPPEVIVEVLEPYVHLTTANVRIIKNRTGPMGHTYGFIDLDSHAEALRVVK
ILQNLDPPFSIDGKMVAVNLATGKRRNDSGDHSDHMHYYQGKKYFRDRRGGNRNSDWSSDTNRQ
GQQSSSDCYIYDSATGYYYDPLAGTYYDPNTQQEVYVPQDPESPEEEEIKEKKSTSQGKSNSKK
ETSKRDGKEKKDRGVTKFQESTSEGKPPPEDVFKKPLPPTVKKEESPPPPKVVNPLIGLLGEYG
GDSDYEEEEEEEQAPPVQPRAAQPQPREELTKKENEEDKLTDWNKLACLLCRRQFPNKEVLTKH
QQLSDLHKQNLEIHRKIKQSEQELAYLERREREGRFKEKGSDRREKLQSFDSPERKRIKYSRET
DSDRNPVDKEDTDTSSKGGCTQQATGWRKGAGLGYSHPGLGSSEEIEGRMRGSGGAPGRTSKRQ
SNETYRDAVRRVMFARYKELD

hide sequence

Ensembl Acc Id:

ENSRNOP00000024939 ⟸ ENSRNOT00000024939

RefSeq Acc Id:	XP_038937522 ⟸ XM_039081594
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038937523 ⟸ XM_039081595
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000086814 ⟸ ENSRNOT00000103192

RefSeq Acc Id:	XP_063121699 ⟸ XM_063265629
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063121698 ⟸ XM_063265628
- Peptide Label:	isoform X2

Protein Domains

C2H2-type G-patch RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ACW0-F1-model_v2	AlphaFold	D4ACW0	1-1119	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696281

Promoter ID:

EPDNEW_R6806

Type:

multiple initiation site

Name:

Rbm6_1

Description:

RNA binding motif protein 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	116,635,754 - 116,635,814	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560367	AgrOrtholog
BioCyc Gene	G2FUF-29175	BioCyc
Ensembl Genes	ENSRNOG00000018333	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000024939	ENTREZGENE
	ENSRNOT00000024939.7	UniProtKB/TrEMBL
	ENSRNOT00000103192.2	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
	E3 ubiquitin-protein ligase SopA	UniProtKB/TrEMBL
InterPro	G_patch	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	OCRE	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RBM6_RRM2	UniProtKB/TrEMBL
	RRM_RNP1	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
KEGG Report	rno:315997	UniProtKB/TrEMBL
NCBI Gene	315997	ENTREZGENE
PANTHER	PTHR13948:SF22	UniProtKB/TrEMBL
	RNA-BINDING PROTEIN	UniProtKB/TrEMBL
Pfam	OCRE	UniProtKB/TrEMBL
PhenoGen	Rbm6	PhenoGen
PROSITE	G_PATCH	UniProtKB/TrEMBL
	RRM	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000018333	RatGTEx
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	Pentapeptide repeat-like	UniProtKB/TrEMBL
	SSF54928	UniProtKB/TrEMBL
UniProt	A0A8I6A326	ENTREZGENE, UniProtKB/TrEMBL
	A6I311	ENTREZGENE, UniProtKB/TrEMBL
	D4ACW0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-28	Rbm6	RNA binding motif protein 6	RGD1560367_predicted	similar to Rbm6 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1560367_predicted	similar to Rbm6 protein (predicted)	LOC315997	similar to Rbm6 protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC315997	similar to Rbm6 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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