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Gene: Morc4 (MORC family CW-type zinc finger 4) Rattus norvegicus

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Symbol:

Morc4

Name:

MORC family CW-type zinc finger 4

RGD ID:

1559905

Description:

Predicted to enable histone H3K4me3 reader activity. Predicted to be involved in chromatin organization. Predicted to be active in nucleoplasm. Orthologous to human MORC4 (MORC family CW-type zinc finger 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; atrazine; bisphenol A.

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC315914; microrchidia 4; MORC family CW-type zinc finger protein 4; RGD1559905; similar to zinc finger, CW-type with coiled-coil domain 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	108,269,197 - 108,317,611 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	108,269,383 - 108,317,553 (-)	Ensembl				GRCr8
mRatBN7.2	X	103,477,366 - 103,529,026 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	103,480,603 - 103,528,956 (-)	Ensembl				mRatBN7.2
Rnor_6.0	X	111,143,537 - 111,191,993 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	111,142,602 - 111,191,936 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	53,403,152 - 53,454,821 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	127,559,355 - 127,607,731 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	44,398,586 - 44,447,138 (+)	NCBI		Celera
Cytogenetic Map	X	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Macrocephaly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

choline (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

dimethyl sulfoxide (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

folic acid (ISO)

hydrogen peroxide (ISO)

L-methionine (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

menadione (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

PhIP (EXP)

pirinixic acid (ISO)

potassium dichromate (ISO)

quercetin (ISO)

rotenone (EXP)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

tetraphene (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin organization (IEA)

Cellular Component

nucleoplasm (IBA,IEA,ISO)

nucleus (IBA,IEA)

Molecular Function

ATP hydrolysis activity (IEA)

histone H3K4me3 reader activity (IBA,ISO)

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Morc4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	108,269,197 - 108,317,611 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	108,269,383 - 108,317,553 (-)	Ensembl				GRCr8
mRatBN7.2	X	103,477,366 - 103,529,026 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	103,480,603 - 103,528,956 (-)	Ensembl				mRatBN7.2
Rnor_6.0	X	111,143,537 - 111,191,993 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	111,142,602 - 111,191,936 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	53,403,152 - 53,454,821 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	127,559,355 - 127,607,731 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	44,398,586 - 44,447,138 (+)	NCBI		Celera
Cytogenetic Map	X	q32	NCBI

MORC4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	106,940,738 - 107,000,212 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	106,813,871 - 107,000,254 (-)	Ensembl			hg38	GRCh38
GRCh37	X	106,183,968 - 106,243,442 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	106,070,620 - 106,130,098 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	105,990,113 - 106,034,618	NCBI
Celera	X	106,655,351 - 106,714,844 (-)	NCBI		Celera
Cytogenetic Map	X	q22.3	NCBI
HuRef	X	95,811,934 - 95,871,281 (-)	NCBI		HuRef
CHM1_1	X	106,094,770 - 106,154,304 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	105,377,254 - 105,436,736 (-)	NCBI		T2T-CHM13v2.0

Morc4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	138,722,384 - 138,772,440 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	138,722,381 - 138,772,426 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	139,821,635 - 139,871,692 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	139,821,632 - 139,871,677 (-)	Ensembl			mm10	GRCm38
MGSCv37	X	136,357,385 - 136,406,047 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	135,167,999 - 135,218,018 (-)	NCBI		MGSCv36	mm8
Celera	X	123,085,534 - 123,135,372 (-)	NCBI		Celera
Cytogenetic Map	X	F1	NCBI
cM Map	X	61.35	NCBI

Morc4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955490	9,045,590 - 9,111,716 (+)	Ensembl
ChiLan1.0	NW_004955490	9,045,306 - 9,112,446 (+)	NCBI	ChiLan1.0	ChiLan1.0

MORC4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	106,424,227 - 106,483,817 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	106,427,828 - 106,487,448 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	96,040,992 - 96,100,570 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	106,418,348 - 106,470,758 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	106,418,348 - 106,472,561 (-)	Ensembl			panPan2	panpan1.1

MORC4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	80,497,473 - 80,550,625 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	80,497,504 - 80,551,569 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	66,616,564 - 66,669,726 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	82,140,864 - 82,194,102 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	82,140,895 - 82,194,095 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	79,605,771 - 79,658,931 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	81,315,640 - 81,368,605 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	81,094,634 - 81,147,807 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Morc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	79,846,743 - 79,902,577 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936499	7,755,368 - 7,811,282 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936499	7,755,405 - 7,811,718 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MORC4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	87,369,319 - 87,427,253 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	87,369,311 - 87,427,296 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	101,815,542 - 101,816,412 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MORC4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	94,773,194 - 94,833,949 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	94,774,205 - 94,833,647 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666065	19,857,817 - 19,918,580 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Morc4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624803	9,760,407 - 9,818,738 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624803	9,760,440 - 9,867,349 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Morc4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	92,205,069 - 92,253,785 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Morc4
236 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	71
Count of miRNA genes:	59
Interacting mature miRNAs:	61
Transcripts:	ENSRNOT00000034925
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	97528096	142528096	Rat
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	105359969	157758123	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	80434318	125434318	Rat
738029	Stresp2	Stress response QTL 2	3.4	0.0004	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	92979612	117740458	Rat
61431	Cia19	Collagen induced arthritis QTL 19	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	105468858	125434318	Rat
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	45182909	117740458	Rat
2302047	Pia34	Pristane induced arthritis QTL 34	5.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	19	96916163	141916163	Rat

Markers in Region

RH130812

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	103,480,711 - 103,480,907 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	111,143,649 - 111,143,844	NCBI	Rnor6.0
Rnor_5.0	3	53,451,280 - 53,451,475	UniSTS	Rnor5.0
RGSC_v3.4	X	127,559,481 - 127,559,676	UniSTS	RGSC3.4
Celera	3	44,446,831 - 44,447,026	UniSTS
RH 3.4 Map	7	1120.81	UniSTS
Cytogenetic Map	X	q35	UniSTS

UniSTS:238089

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	103,481,126 - 103,481,405 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	111,144,064 - 111,144,342	NCBI	Rnor6.0
Rnor_5.0	3	53,450,782 - 53,451,060	UniSTS	Rnor5.0
RGSC_v3.4	X	127,559,896 - 127,560,174	UniSTS	RGSC3.4
Celera	3	44,446,333 - 44,446,611	UniSTS
Cytogenetic Map	X	q35	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	157	91	90	59	88	59	6	352	188	11	136	81	92	31	13	13

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_001053814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_236536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC158847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000083613 ⟹ ENSRNOP00000075042

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	X	111,177,731 - 111,191,936 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088050 ⟹ ENSRNOP00000073672

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	108,269,383 - 108,317,553 (-)	Ensembl
mRatBN7.2 Ensembl	X	103,480,603 - 103,528,956 (-)	Ensembl
Rnor_6.0 Ensembl	X	111,143,523 - 111,191,932 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089115 ⟹ ENSRNOP00000073417

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	X	111,142,602 - 111,179,152 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000144074 ⟹ ENSRNOP00000098705

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	108,269,935 - 108,317,553 (-)	Ensembl

RefSeq Acc Id:

XM_063280366 ⟹ XP_063136436

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	108,269,962 - 108,305,189 (-)	NCBI

RefSeq Acc Id:

XM_236536 ⟹ XP_236536

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	108,269,197 - 108,317,611 (-)	NCBI
mRatBN7.2	X	103,477,366 - 103,529,026 (-)	NCBI
Rnor_6.0	X	111,143,537 - 111,191,992 (-)	NCBI
Rnor_5.0	3	53,403,152 - 53,454,821 (+)	NCBI
RGSC_v3.4	X	127,559,355 - 127,607,731 (-)	RGD

Sequence:

show sequence

TGTCAGGAGATCGCCATATTTCTGTACGGCCCAGGGGCAGCCCTGGCAGTCGGTGGGTCAGGAG
AGGTGCTGACAAGGCGGGGCGGGCAGACGCTGTGTTCCTCCGGCTTCACCCCTCCCGCTGGGGA
CAGGTGGCTGCAGCGCGCCCCGCCTCTGCCAGCTGCGAGTGGGAACGAGAGAGGGCCAGTCCGG
GACGGCCACCGCCAGCTGCGAATCGGGGGACAGCGCGATCTAGTGCGGGGACAGCCGGCCCAGG
GGTCCGGCAGCAGCAAACCGGTATCCTGGCGGCCAAAAAAATGCTCCTCTACCGAGGGGCCCCT
GCGGCCCCCGGAACGCCGAGAGGCGGACTGGCCCGGGCGGGCAGCGTCCCGCAGGCCTTCAGGA
TCCGCCTGAGCACGATAAGCCCCCGCTACCTCCAGAGCAACTCCTGCAGCCACACGCGACCCTT
CAGTGCCATCGCGGAGCTGCTAGATAATGCTGTAGACCCAGATGTATGTGCCAGAACGGTCTTT
ATAGATGTTGAGGAAGTCAAGAACAAACCTTGTTTGACCTTTACTGATGATGGATGTGGCATGA
CCGCTCACAAGCTCTACCGAATGCTCAGCTTTGGATTCACAGATAAAGTAATAAAGAAAAGCCA
GTGTCCCATCGGGGTCTTCGGTAATGGTTTTAAGTCGGGTTCCATGCGACTAGGAAAGGACGTT
CTTGTCTTCACCAAAAATGGGAGTACCCTGGCCGTCGGACTTCTGTCACAGACCTACCTGGAGT
GTATCCAGGCACAGGCGGTTATTGTACCAATTGTCCCATTCAGCCAGCAAAACAAAAAAATGAT
TGTTACTGAGGATTCTTTGCCCAGCTTAGAAGCCATCTTGAACTACTCGATTTTCAATGATGAA
AGAGACCTGATGTCTCAGTTCGATGCCATTCCGGGCAAAAAAGGCACCCGTGTTCTCATCTGGA
ATATCCGGAGAAACAAAGATGGAAAGGCCGAGCTGGACTTTGACTCAGATCAATATGATATCCT
GGTGTCAGACTTCGCTGCTGAAGAAAAAATGGTTGATGGTGTGGCCTCTGAGCTGCCAGAAACA
GAGTATTCCTTACGGGCATTTTGTAGTATTCTATATATGAAGCCAAGGATGAAGATTTTTCTCC
GACAAAAGAAGGTGACTCCGCAGATGATTGCTAAGAGCCTGACCAATGTAGAATATGATACATA
TAAGCCTACCTCCACGAATAAGCAAGTGAGAATCACATTTGGATTCTCTTGCAAATATCGGAAC
CAGTTTGGAGTTATGATGTATCATAACAACCGCCTTATTAAGGCCTTTGAGAAAGCGGGCTGCC
AGTTAAAGCCAACCTGTGGAGAAGGTGTGGGAGTAATTGGAGTCATTGAGTGCAATTTCCTAAA
ACCTGCGTACAACAAACAAGAATTTGAGTATACCAAGGAATACCGGTTGACAATAAATGCCCTT
GCCCAGAAGCTCAATGCTTATTGGAAGGAAAAAATATCTCAAGAGAACTTTGAGACCTCACCTA
TATCCAGGGGGATTCCTGACCAGACATGGGTGCAGTGTGATGAATGTCTTAAGTGGAGGAAACT
TCCTGGAAAGGTGGATCCATCCACACTACCTGCAAGATGGTTTTGTTATTATAACCCCCATCCA
AAATACAAGAGATGCTCTGTTCCAGAAGAACAAGAACGCATTGATGAAGACTTACACCGGAGCA
AGGCTAAGCAACAAGTCGAGATTGTCGAGAAGAAGCAGAAGCCTGTGGAAAGTGACAAGTACCA
GGTCTTCAGTAACCCACCAAAGATTCCTACGCCACAAAATATGACTCAACTAAATGACAAGACA
ATTGGATATGAGCGAATCAATAGCCCCAGACTGCTTCCATCGGTTGGAGAAGAAAGCAGATCAC
CCCCTCGACTTAAATCTCTGGATTCCAGTGCTTTTCAGATTTCCAGGAAATACAAATTAATCCT
AGGCGAGGAGCCTGCAGAGAAACGAAGGAAGATCCAAACTGACACGACGCTATCTCCTATAGAT
TATTCCATGTCTAGTTATTACAGGAGGGTAGAAGCAGCCACTGCTTACCCAGAAGGAGACAACA
GCCCTGATAAATCCAGTTCTGAGAGAAGTACACCACCACACCTCATACCAGAATACCCAGAATC
AAACAAGCGTGCAGAACAGAATAGGGAAGCCCCAGCGCTTTGTCCAGGGTCCCAGGACCAAGAT
CAGGGGTTTCTGCTTCCTGAAGAATTAGAAGATCAGATGCCAAAATTGGTAGCAGAAGAGTCTA
ACAGAAGTAGTGAGAACATAGACAAAGACATGAATAAAGGGCCTTTTGTAGCTGTCGTCGGTGT
TGCTAAGGGAGTTGCCGATTCAGGAGCTCCCATCCAGCTAGTTCCCTTTAACAGGGAAGAGTTT
GTAGGCAAAAGAAAGAGAGCAGAATCCTGGAAGAGAGCAAACCCTTATTCTTCTGCGGCTCCTG
CAGCCACTGCTGGGAATGGAAAGGGCTGCCAGGAGAGCAGAAGTCGAAACATGGCAAAGACAAA
GAACCGGAAACAGTTGGAAGAATTGAAGAGAACCACGGAAAAATTGGAACGTGTTTTGGCTGAA
AGGAATTTGTTCCAGCAAAAGGTAGAAGAGCTGGAACAGGAGAAAAATCACTGGCATTCTGAAT
ATAAGAAAGCTCAACATGAATTGGTGACCTATAGTACCCAGGAGACAGAAGGCTTATACTGGAG
CAAGAAGCACATGGGTTATCGCCAAGCTGAATTCCAGATTCTGAAAGCTGAGCTAGAAAGAACC
AAAGAGGAGAAGCAAGAACTGAAAGAGAAACTGAAAGAGACACAGTCACACCTGGAAGTATTGC
AGAAGGCCCAGGTCTCCTTCCGGAGCCCAGAGGGAGATGACCTAGAAAGGGCTCTGGCCAGGCT
CACTCGGCTACGTGTCCACGTCAGCTATCTCCTTACTTCTGTCCTCCCTCACTTGGAGCTTCGT
GAGATCGGGTTTGACTCAGAGCAAGTGGATGGGATCCTGTACACAGTGCTGGAGGCAAATCACA
TACTGGACTGAGCAGCAGACTATATATCCTCTCCTAGCTTTCTTTTCTCTCGTCTGCCTGTGTA
CTGAATGTCCTCCCTTGTCTTGTCTCTTCTTTCTCCCCTTCTCCCTTCCTATCCCTCCCCCAGA
CCCCAGCCTCTTTCTTTCTTTCACCCTTATGCCTTATATGGAGAATCTTTGAATGAGTCCTGGC
TCTTAATCACATTCATGGCGGGTGTGAAGAGAGAGGCCCATTAAACAGCCTTGTAAGAGTTCAG
GGACAGCAAAGCAATAGTCACCAAGTTAGGTGACCTGAAAGTTCTAATTTTGATGATCTAGATA
CTTGGCCTGTTTCATATTCTTGATAATGGATTGTATCGATTTAGGTTAAATCAGTCAGCAAATG
TTGGGTCCAATGTACTTGGTGGGCCAAGTAATGATTTCAGCCCTGCCAAGGTTCTAACAATCTA
GTTGGAAGCACAAGGCACACCAAGTTATCAAACTATACCAAGAAGGGTATGGTGTATGTGAGTG
GTATACACATGACACGGAAGGTAGAGGAGGGAAGTTTAAAGGAAGGCAGTACACTGTAATTGGG
ACCTAAATGAAGCTTTCAAGAGTGAACGTGAGTGACAACACTCTTAAGGATGGTTGGTGCTTAG
GTGGTAGGATTATGATTGATGATTTTTTTTCTTCCTATCTTCTTGCCCTGTTCAAATTTTTTTT
TCTCTAACATTCTTGTCGCTCTTCTTACATTGGAAAATAAATTGTTTTGAAAGCTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_063136436	(Get FASTA)	NCBI Sequence Viewer
	XP_236536	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58848	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000073672.2
	ENSRNOP00000098705
	ENSRNOP00000098705.1

RefSeq Acc Id:	XP_236536 ⟸ XM_236536
- Peptide Label:	isoform X2
- UniProtKB:	A0A096MK24 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLYRGAPAAPGTPRGGLARAGSVPQAFRIRLSTISPRYLQSNSCSHTRPFSAIAELLDNAVDP DVCARTVFIDVEEVKNKPCLTFTDDGCGMTAHKLYRMLSFGFTDKVIKKSQCPIGVFGNGFKSG SMRLGKDVLVFTKNGSTLAVGLLSQTYLECIQAQAVIVPIVPFSQQNKKMIVTEDSLPSLEAIL NYSIFNDERDLMSQFDAIPGKKGTRVLIWNIRRNKDGKAELDFDSDQYDILVSDFAAEEKMVDG VASELPETEYSLRAFCSILYMKPRMKIFLRQKKVTPQMIAKSLTNVEYDTYKPTSTNKQVRITF GFSCKYRNQFGVMMYHNNRLIKAFEKAGCQLKPTCGEGVGVIGVIECNFLKPAYNKQEFEYTKE YRLTINALAQKLNAYWKEKISQENFETSPISRGIPDQTWVQCDECLKWRKLPGKVDPSTLPARW FCYYNPHPKYKRCSVPEEQERIDEDLHRSKAKQQVEIVEKKQKPVESDKYQVFSNPPKIPTPQN MTQLNDKTIGYERINSPRLLPSVGEESRSPPRLKSLDSSAFQISRKYKLILGEEPAEKRRKIQT DTTLSPIDYSMSSYYRRVEAATAYPEGDNSPDKSSSERSTPPHLIPEYPESNKRAEQNREAPAL CPGSQDQDQGFLLPEELEDQMPKLVAEESNRSSENIDKDMNKGPFVAVVGVAKGVADSGAPIQL VPFNREEFVGKRKRAESWKRANPYSSAAPAATAGNGKGCQESRSRNMAKTKNRKQLEELKRTTE KLERVLAERNLFQQKVEELEQEKNHWHSEYKKAQHELVTYSTQETEGLYWSKKHMGYRQAEFQI LKAELERTKEEKQELKEKLKETQSHLEVLQKAQVSFRSPEGDDLERALARLTRLRVHVSYLLTS VLPHLELREIGFDSEQVDGILYTVLEANHILD hide sequence

Ensembl Acc Id:

ENSRNOP00000073417 ⟸ ENSRNOT00000089115

Ensembl Acc Id:

ENSRNOP00000075042 ⟸ ENSRNOT00000083613

Ensembl Acc Id:

ENSRNOP00000073672 ⟸ ENSRNOT00000088050

RefSeq Acc Id:	XP_063136436 ⟸ XM_063280366
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000098705 ⟸ ENSRNOT00000144074

Protein Domains

CW-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A096MK24-F1-model_v2	AlphaFold	A0A096MK24	1-928	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701960

Promoter ID:

EPDNEW_R12478

Type:

multiple initiation site

Name:

Morc4_1

Description:

MORC family CW-type zinc finger 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	111,191,945 - 111,192,005	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1559905	AgrOrtholog
BioCyc Gene	G2FUF-1552	BioCyc
Ensembl Genes	ENSRNOG00000060846	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000088050.3	UniProtKB/TrEMBL
	ENSRNOT00000144074	ENTREZGENE
	ENSRNOT00000144074.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.100	UniProtKB/TrEMBL
	3.30.565.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7443919	IMAGE-MGC_LOAD
InterPro	HATPase_C_sf	UniProtKB/TrEMBL
	MORC_ATPase	UniProtKB/TrEMBL
	Morc_S5	UniProtKB/TrEMBL
	Znf_CW	UniProtKB/TrEMBL
MGC_CLONE	MGC:188323	IMAGE-MGC_LOAD
NCBI Gene	315914	ENTREZGENE
PANTHER	MORC FAMILY CW-TYPE ZINC FINGER PROTEIN 4	UniProtKB/TrEMBL
	PTHR23336	UniProtKB/TrEMBL
Pfam	HATPase_c_3	UniProtKB/TrEMBL
	Morc6_S5	UniProtKB/TrEMBL
	zf-CW	UniProtKB/TrEMBL
PhenoGen	Morc4	PhenoGen
PROSITE	ZF_CW	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000060846	RatGTEx
Superfamily-SCOP	SSF55874	UniProtKB/TrEMBL
UniProt	A0A096MK24	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LBQ1_RAT	UniProtKB/TrEMBL
	B0BNJ3_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-25	Morc4	MORC family CW-type zinc finger 4	Morc4	microrchidia 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Morc4	microrchidia 4	Morc4_predicted	MORC family CW-type zinc finger 4 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Morc4_predicted	MORC family CW-type zinc finger 4 (predicted)	RGD1559905_predicted	similar to zinc finger, CW-type with coiled-coil domain 2 (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1559905_predicted	similar to zinc finger, CW-type with coiled-coil domain 2 (predicted)	LOC315914	similar to zinc finger, CW-type with coiled-coil domain 2	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC315914	similar to zinc finger, CW-type with coiled-coil domain 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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