C19h1orf198 (similar to human chromosome 1 open reading frame 198) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: C19h1orf198 (similar to human chromosome 1 open reading frame 198) Rattus norvegicus
Analyze
Symbol: C19h1orf198
Name: similar to human chromosome 1 open reading frame 198
RGD ID: 1559896
Description: Predicted to be located in cytosol. Orthologous to human C1orf198 (chromosome 1 open reading frame 198); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; Brodifacoum.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC498967; LOC498967; RGD1559896; similar to RIKEN cDNA 2310022B05; uncharacterized protein C1orf198 homolog; uncharacterized protein LOC498967
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81969,501,453 - 69,526,826 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1969,501,453 - 69,526,826 (-)EnsemblGRCr8
mRatBN7.21952,604,060 - 52,629,436 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1952,604,060 - 52,629,436 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1959,388,813 - 59,414,196 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01960,240,718 - 60,266,076 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01962,315,271 - 62,340,660 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01957,396,606 - 57,422,124 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1957,396,606 - 57,422,093 (-)Ensemblrn6Rnor6.0
Rnor_5.01968,101,910 - 68,127,030 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41954,814,033 - 54,839,538 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1951,973,094 - 51,998,412 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
C19h1orf198
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81969,501,453 - 69,526,826 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1969,501,453 - 69,526,826 (-)EnsemblGRCr8
mRatBN7.21952,604,060 - 52,629,436 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1952,604,060 - 52,629,436 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1959,388,813 - 59,414,196 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01960,240,718 - 60,266,076 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01962,315,271 - 62,340,660 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01957,396,606 - 57,422,124 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1957,396,606 - 57,422,093 (-)Ensemblrn6Rnor6.0
Rnor_5.01968,101,910 - 68,127,030 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41954,814,033 - 54,839,538 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1951,973,094 - 51,998,412 (-)NCBICelera
Cytogenetic Map19q12NCBI
C1orf198
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381230,837,119 - 230,869,591 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1230,837,119 - 230,869,589 (-)Ensemblhg38GRCh38
GRCh371230,972,865 - 231,005,337 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361229,039,489 - 229,070,900 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1204,238,818 - 204,271,280 (-)NCBICelera
Cytogenetic Map1q42.2NCBI
HuRef1201,457,528 - 201,489,961 (-)NCBIHuRef
CHM1_11232,245,891 - 232,278,311 (-)NCBICHM1_1
T2T-CHM13v2.01230,217,591 - 230,250,079 (-)NCBIT2T-CHM13v2.0
2310022B05Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398125,362,495 - 125,390,108 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8125,362,495 - 125,390,108 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm388124,635,756 - 124,663,369 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8124,635,756 - 124,663,369 (-)Ensemblmm10GRCm38
MGSCv378127,159,656 - 127,187,269 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368127,521,846 - 127,549,459 (-)NCBIMGSCv36mm8
Celera8128,931,821 - 128,961,418 (-)NCBICelera
Cytogenetic Map8E2NCBI
cM Map872.81NCBI
CUNH1orf198
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554927,762,534 - 7,774,394 (+)NCBIChiLan1.0ChiLan1.0
C1H1orf198
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2118,338,313 - 18,369,450 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1118,530,872 - 18,561,972 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01206,386,486 - 206,417,583 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11211,413,850 - 211,445,020 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1211,413,850 - 211,445,020 (-)EnsemblpanPan2panpan1.1
C4H1orf198
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.148,531,219 - 8,564,929 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl48,531,001 - 8,564,910 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha48,522,968 - 8,556,697 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.048,555,998 - 8,589,669 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl48,554,189 - 8,589,665 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.148,560,088 - 8,593,700 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.048,682,190 - 8,715,818 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.048,912,263 - 8,945,915 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
CUNH1orf198
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934443,466,304 - 43,492,162 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648419,631,524 - 19,657,560 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648419,631,530 - 19,657,388 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C14H1orf198
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1459,515,877 - 59,552,288 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11459,516,754 - 59,553,705 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21464,181,727 - 64,217,120 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C25H1orf198
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12568,108,942 - 68,137,870 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2568,106,262 - 68,137,838 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605570,014,494 - 70,045,647 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH1orf198
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477518,739,274 - 18,770,524 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477518,739,501 - 18,770,108 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
C17H1orf198
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11744,155,369 - 44,181,179 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:274
Count of miRNA genes:178
Interacting mature miRNAs:226
Transcripts:ENSRNOT00000025512
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194438513474246245Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)196124916174246245Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)194622677874246245Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)194172254674246245Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat

Markers in Region
RH128480  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21952,604,147 - 52,604,334 (+)MAPPERmRatBN7.2
Rnor_6.01957,396,694 - 57,396,880NCBIRnor6.0
Rnor_5.01968,101,998 - 68,102,184UniSTSRnor5.0
RGSC_v3.41954,814,121 - 54,814,307UniSTSRGSC3.4
Celera1951,973,182 - 51,973,368UniSTS
RH 3.4 Map19719.8UniSTS
Cytogenetic Map19q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000025512   ⟹   ENSRNOP00000025512
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1969,501,453 - 69,526,826 (-)Ensembl
mRatBN7.2 Ensembl1952,604,060 - 52,629,436 (-)Ensembl
Rnor_6.0 Ensembl1957,396,606 - 57,422,093 (-)Ensembl
RefSeq Acc Id: NM_001109134   ⟹   NP_001102604
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81969,501,453 - 69,526,826 (-)NCBI
mRatBN7.21952,604,060 - 52,629,436 (-)NCBI
Rnor_6.01957,396,606 - 57,422,093 (-)NCBI
Rnor_5.01968,101,910 - 68,127,030 (-)NCBI
RGSC_v3.41954,814,033 - 54,839,538 (-)RGD
Celera1951,973,094 - 51,998,412 (-)RGD
Sequence:
RefSeq Acc Id: XM_008772643   ⟹   XP_008770865
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81969,501,453 - 69,523,149 (-)NCBI
mRatBN7.21952,604,060 - 52,625,784 (-)NCBI
Rnor_6.01957,396,606 - 57,418,511 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001102604 (Get FASTA)   NCBI Sequence Viewer  
  XP_008770865 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL96735 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000025512
  ENSRNOP00000025512.4
RefSeq Acc Id: NP_001102604   ⟸   NM_001109134
- UniProtKB: D3ZY47 (UniProtKB/TrEMBL),   A6KJ13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770865   ⟸   XM_008772643
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000025512   ⟸   ENSRNOT00000025512
Protein Domains
DUF4706

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZY47-F1-model_v2 AlphaFold D3ZY47 1-324 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701236
Promoter ID:EPDNEW_R11760
Type:initiation region
Name:RGD1559896_1
Description:similar to RIKEN cDNA 2310022B05
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01957,422,064 - 57,422,124EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559896 AgrOrtholog
BioCyc Gene G2FUF-5242 BioCyc
Ensembl Genes ENSRNOG00000018836 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025512 ENTREZGENE
  ENSRNOT00000025512.6 UniProtKB/TrEMBL
InterPro DUF4706 UniProtKB/TrEMBL
KEGG Report rno:498967 UniProtKB/TrEMBL
NCBI Gene 498967 ENTREZGENE
PANTHER SIMILAR TO RIKEN CDNA 2310022B05 UniProtKB/TrEMBL
  SIMILAR TO RIKEN CDNA 2310022B05 UniProtKB/TrEMBL
Pfam DUF4706 UniProtKB/TrEMBL
PhenoGen C19h1orf198 PhenoGen
RatGTEx ENSRNOG00000018836 RatGTEx
UniProt A6KJ13 ENTREZGENE, UniProtKB/TrEMBL
  D3ZY47 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-24 C19h1orf198  similar to human chromosome 1 open reading frame 198  RGD1559896  similar to RIKEN cDNA 2310022B05  Name and Symbol changed 629549 APPROVED
2008-04-30 RGD1559896  similar to RIKEN cDNA 2310022B05   RGD1559896_predicted  similar to RIKEN cDNA 2310022B05 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1559896_predicted  similar to RIKEN cDNA 2310022B05 (predicted)  LOC498967  similar to RIKEN cDNA 2310022B05  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498967  similar to RIKEN cDNA 2310022B05      Symbol and Name status set to provisional 70820 PROVISIONAL