CUNH1orf198 (chromosome unknown C1orf198 homolog) - Rat Genome Database

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Gene: CUNH1orf198 (chromosome unknown C1orf198 homolog) Heterocephalus glaber
Analyze
Symbol: CUNH1orf198 (Ensembl: C1orf198)
Name: chromosome unknown C1orf198 homolog
RGD ID: 18900419
Description: ASSOCIATED WITH Actin-Accumulation Myopathy (ortholog); congenital disorder of glycosylation type IIq (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein C1orf198 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477518,739,274 - 18,770,524 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477518,739,501 - 18,770,108 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)

References

Genomics

Comparative Map Data
CUNH1orf198
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477518,739,274 - 18,770,524 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477518,739,501 - 18,770,108 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
C1orf198
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381230,837,119 - 230,869,591 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1230,837,119 - 230,869,589 (-)EnsemblGRCh38hg38GRCh38
GRCh371230,972,865 - 231,005,337 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361229,039,489 - 229,070,900 (-)NCBINCBI36Build 36hg18NCBI36
Celera1204,238,818 - 204,271,280 (-)NCBICelera
Cytogenetic Map1q42.2NCBI
HuRef1201,457,528 - 201,489,961 (-)NCBIHuRef
CHM1_11232,245,891 - 232,278,311 (-)NCBICHM1_1
T2T-CHM13v2.01230,217,591 - 230,250,079 (-)NCBIT2T-CHM13v2.0
2310022B05Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398125,362,495 - 125,390,108 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8125,362,495 - 125,390,108 (-)EnsemblGRCm39 Ensembl
GRCm388124,635,756 - 124,663,369 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8124,635,756 - 124,663,369 (-)EnsemblGRCm38mm10GRCm38
MGSCv378127,159,656 - 127,187,269 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368127,521,846 - 127,549,459 (-)NCBIMGSCv36mm8
Celera8128,931,821 - 128,961,418 (-)NCBICelera
Cytogenetic Map8E2NCBI
cM Map872.81NCBI
C19h1orf198
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81969,501,453 - 69,526,826 (-)NCBIGRCr8
mRatBN7.21952,604,060 - 52,629,436 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1952,604,060 - 52,629,436 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1959,388,813 - 59,414,196 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01960,240,718 - 60,266,076 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01962,315,271 - 62,340,660 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01957,396,606 - 57,422,124 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1957,396,606 - 57,422,093 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01968,101,910 - 68,127,030 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41954,814,033 - 54,839,538 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1951,973,094 - 51,998,412 (-)NCBICelera
Cytogenetic Map19q12NCBI
CUNH1orf198
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554927,762,534 - 7,774,394 (+)NCBIChiLan1.0ChiLan1.0
C1H1orf198
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2118,338,313 - 18,369,450 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1118,530,872 - 18,561,972 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01206,386,486 - 206,417,583 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11211,413,850 - 211,445,020 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1211,413,850 - 211,445,020 (-)Ensemblpanpan1.1panPan2
C4H1orf198
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.148,531,219 - 8,564,929 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl48,531,001 - 8,564,910 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha48,522,968 - 8,556,697 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.048,555,998 - 8,589,669 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.148,560,088 - 8,593,700 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.048,682,190 - 8,715,818 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.048,912,263 - 8,945,915 (+)NCBIUU_Cfam_GSD_1.0
CUNH1orf198
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934443,466,304 - 43,492,162 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648419,631,524 - 19,657,560 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648419,631,530 - 19,657,388 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C14H1orf198
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1459,515,877 - 59,552,288 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11459,516,754 - 59,553,705 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21464,181,727 - 64,217,120 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH1orf198
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12568,108,942 - 68,137,870 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2568,106,262 - 68,137,838 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605570,014,494 - 70,045,647 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000016751   ⟹   ENSHGLP00000016581
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477518,739,274 - 18,770,524 (+)Ensembl
RefSeq Acc Id: XM_004854673   ⟹   XP_004854730
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477518,739,501 - 18,770,108 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004854730 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000016581
Reference Protein Sequences
RefSeq Acc Id: XP_004854730   ⟸   XM_004854673
RefSeq Acc Id: ENSHGLP00000016581   ⟸   ENSHGLT00000016751


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011852 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000016751 ENTREZGENE
NCBI Gene CUNH1orf198 ENTREZGENE