Ilrun (inflammation and lipid regulator with UBA-like and NBR1-like domains) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ilrun (inflammation and lipid regulator with UBA-like and NBR1-like domains) Rattus norvegicus
Analyze
Symbol: Ilrun
Name: inflammation and lipid regulator with UBA-like and NBR1-like domains
RGD ID: 1559829
Description: Predicted to enable ubiquitin binding activity. Predicted to be involved in several processes, including negative regulation of cytokine production; negative regulation of defense response to virus; and negative regulation of protein localization to nucleus. Predicted to be located in centrosome; cytosol; and nuclear speck. Predicted to be active in phagophore assembly site. Orthologous to human ILRUN (inflammation and lipid regulator with UBA-like and NBR1-like domains); INTERACTS WITH gentamycin; thioacetamide; 1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: chromosome 6 open reading frame 106-like; hypothetical protein LOC294154; LOC294154; LOC294294; MGC124820; RGD1310148; similar to chromosome 6 open reading frame 106 isoform a; similar to hypothetical protein MGC4614; uncharacterized protein C6orf106 homolog; uncharacterized protein LOC294154
RGD Orthologs
Human
Mouse
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8205,811,721 - 5,878,082 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl205,811,734 - 5,877,978 (-)EnsemblGRCr8
mRatBN7.2205,809,931 - 5,876,197 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl205,809,936 - 5,876,012 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx206,522,583 - 6,588,605 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0205,884,372 - 5,950,402 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0206,364,082 - 6,430,193 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd206,162,848 - 6,229,482 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive207,158,805 - 7,225,439 (-)NCBILyon_Normotensive
Lyon_Hypertensive207,161,767 - 7,228,407 (-)NCBILyon_Hypertensive
F344_StmMcwi206,178,991 - 6,245,091 (-)NCBIF344_StmMcwi
Rnor_6.0207,331,321 - 7,397,588 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl207,331,326 - 7,397,448 (-)Ensemblrn6Rnor6.0
Rnor_5.0209,533,329 - 9,599,034 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4205,965,992 - 6,033,724 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera207,371,306 - 7,437,251 (-)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
cytosol  (IEA,ISO)
nuclear speck  (IEA,ISO)
nucleus  (IEA,ISO)
phagophore assembly site  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:29802199  


Genomics

Comparative Map Data
Ilrun
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8205,811,721 - 5,878,082 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl205,811,734 - 5,877,978 (-)EnsemblGRCr8
mRatBN7.2205,809,931 - 5,876,197 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl205,809,936 - 5,876,012 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx206,522,583 - 6,588,605 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0205,884,372 - 5,950,402 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0206,364,082 - 6,430,193 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd206,162,848 - 6,229,482 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive207,158,805 - 7,225,439 (-)NCBILyon_Normotensive
Lyon_Hypertensive207,161,767 - 7,228,407 (-)NCBILyon_Hypertensive
F344_StmMcwi206,178,991 - 6,245,091 (-)NCBIF344_StmMcwi
Rnor_6.0207,331,321 - 7,397,588 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl207,331,326 - 7,397,448 (-)Ensemblrn6Rnor6.0
Rnor_5.0209,533,329 - 9,599,034 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4205,965,992 - 6,033,724 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera207,371,306 - 7,437,251 (-)NCBICelera
Cytogenetic Map20p12NCBI
ILRUN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38634,587,288 - 34,696,767 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl634,587,288 - 34,696,881 (-)Ensemblhg38GRCh38
GRCh37634,555,065 - 34,664,544 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36634,663,043 - 34,772,603 (-)NCBIBuild 36Build 36hg18NCBI36
Celera636,109,394 - 36,219,085 (-)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef634,277,695 - 34,387,079 (-)NCBIHuRef
CHM1_1634,558,029 - 34,667,828 (-)NCBICHM1_1
T2T-CHM13v2.0634,411,143 - 34,520,743 (-)NCBIT2T-CHM13v2.0
Ilrun
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391727,970,206 - 28,039,516 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1727,970,209 - 28,039,622 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381727,751,232 - 27,820,542 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1727,751,235 - 27,820,648 (-)Ensemblmm10GRCm38
MGSCv371727,888,180 - 27,957,487 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361727,481,414 - 27,548,131 (-)NCBIMGSCv36mm8
Celera1728,303,533 - 28,372,972 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1714.59NCBI
Ilrun
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554372,694,945 - 2,769,998 (-)Ensembl
ChiLan1.0NW_0049554372,697,998 - 2,769,998 (-)NCBIChiLan1.0ChiLan1.0
ILRUN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1123,861,063 - 3,955,356 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl123,862,477 - 3,955,348 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha123,876,763 - 3,970,773 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0124,196,212 - 4,290,402 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl124,197,909 - 4,290,436 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1123,857,654 - 3,951,847 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0123,939,003 - 4,033,002 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0124,037,998 - 4,132,485 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ilrun
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494639,424,067 - 39,511,774 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647624,448,350 - 24,536,196 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647624,448,402 - 24,536,163 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ILRUN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl730,562,987 - 30,667,146 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1730,561,744 - 30,667,115 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2735,318,373 - 35,410,399 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2735,167,561 - 35,188,220 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ILRUN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11737,402,940 - 37,555,871 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1737,402,966 - 37,516,822 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604434,506,953 - 34,624,366 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ilrun
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475422,613,396 - 22,694,022 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ilrun
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1186,035,137 - 6,102,632 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ilrun
600 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:357
Count of miRNA genes:207
Interacting mature miRNAs:265
Transcripts:ENSRNOT00000059426
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2016693431Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362632310078622Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2016693431Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036263239244918Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
17 13 78 199 91 90 59 144 59 6 457 260 17 182 113 114 31 34 34

Sequence


Ensembl Acc Id: ENSRNOT00000059426   ⟹   ENSRNOP00000056183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl205,811,734 - 5,877,978 (-)Ensembl
mRatBN7.2 Ensembl205,809,936 - 5,876,012 (-)Ensembl
Rnor_6.0 Ensembl207,331,326 - 7,397,448 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095695   ⟹   ENSRNOP00000091752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl205,811,734 - 5,877,978 (-)Ensembl
mRatBN7.2 Ensembl205,809,936 - 5,876,012 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099815   ⟹   ENSRNOP00000090973
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl205,811,326 - 5,876,012 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111162   ⟹   ENSRNOP00000093528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl205,820,429 - 5,877,978 (-)Ensembl
mRatBN7.2 Ensembl205,818,644 - 5,876,012 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114745   ⟹   ENSRNOP00000080612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl205,824,472 - 5,876,012 (-)Ensembl
RefSeq Acc Id: NM_001039607   ⟹   NP_001034696
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,811,721 - 5,877,978 (-)NCBI
mRatBN7.2205,809,931 - 5,876,197 (-)NCBI
Dahl_SR_JrHsd206,162,848 - 6,229,482 (-)NCBI
Lyon_Normotensive207,158,805 - 7,225,439 (-)NCBI
Lyon_Hypertensive207,161,767 - 7,228,407 (-)NCBI
F344_StmMcwi206,178,991 - 6,245,091 (-)NCBI
Rnor_6.0207,331,321 - 7,397,393 (-)NCBI
Rnor_5.0209,533,329 - 9,599,034 (-)NCBI
RGSC_v3.4205,965,992 - 6,033,724 (-)RGD
Celera207,371,306 - 7,437,251 (-)RGD
Sequence:
RefSeq Acc Id: NM_001410292   ⟹   NP_001397221
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,811,721 - 5,877,978 (-)NCBI
mRatBN7.2205,809,931 - 5,876,197 (-)NCBI
Dahl_SR_JrHsd206,162,848 - 6,229,482 (-)NCBI
Lyon_Normotensive207,158,805 - 7,225,439 (-)NCBI
Lyon_Hypertensive207,161,767 - 7,228,407 (-)NCBI
F344_StmMcwi206,178,991 - 6,245,091 (-)NCBI
RefSeq Acc Id: XM_063278990   ⟹   XP_063135060
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,814,290 - 5,878,082 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001034696 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397221 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135060 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI12321 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000056183
  ENSRNOP00000056183.4
  ENSRNOP00000091752.1
  ENSRNOP00000093528
  ENSRNOP00000093528.1
RefSeq Acc Id: NP_001034696   ⟸   NM_001039607
- Peptide Label: isoform 2
- UniProtKB: Q2M1K7 (UniProtKB/TrEMBL),   F1MAI9 (UniProtKB/TrEMBL),   A0A8I5ZQ01 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000056183   ⟸   ENSRNOT00000059426
Ensembl Acc Id: ENSRNOP00000080612   ⟸   ENSRNOT00000114745
Ensembl Acc Id: ENSRNOP00000091752   ⟸   ENSRNOT00000095695
Ensembl Acc Id: ENSRNOP00000093528   ⟸   ENSRNOT00000111162
Ensembl Acc Id: ENSRNOP00000090973   ⟸   ENSRNOT00000099815
RefSeq Acc Id: NP_001397221   ⟸   NM_001410292
- Peptide Label: isoform 1
- UniProtKB: A0A8J8XEJ8 (UniProtKB/TrEMBL),   A6JJN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135060   ⟸   XM_063278990
- Peptide Label: isoform X1
- UniProtKB: A6JJN5 (UniProtKB/TrEMBL)
Protein Domains
Nbr1 FW

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q2M1K7-F1-model_v2 AlphaFold Q2M1K7 1-216 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701450
Promoter ID:EPDNEW_R11974
Type:initiation region
Name:LOC294154_1
Description:similar to chromosome 6 open reading frame 106 isoform a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0207,397,547 - 7,397,607EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559829 AgrOrtholog
BioCyc Gene G2FUF-4459 BioCyc
Ensembl Genes ENSRNOG00000038883 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000059426 ENTREZGENE
  ENSRNOT00000059426.6 UniProtKB/TrEMBL
  ENSRNOT00000095695.2 UniProtKB/TrEMBL
  ENSRNOT00000111162 ENTREZGENE
  ENSRNOT00000111162.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7933524 IMAGE-MGC_LOAD
InterPro C6orf106_UBA-like UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  N_BRCA1_central UniProtKB/TrEMBL
  UBA-like UniProtKB/TrEMBL
KEGG Report rno:294154 UniProtKB/TrEMBL
MGC_CLONE MGC:124820 IMAGE-MGC_LOAD
NCBI Gene 294154 ENTREZGENE
PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED UniProtKB/TrEMBL
  PROTEIN ILRUN UniProtKB/TrEMBL
Pfam N_BRCA1_IG UniProtKB/TrEMBL
  UBA_4 UniProtKB/TrEMBL
PhenoGen Ilrun PhenoGen
RatGTEx ENSRNOG00000038883 RatGTEx
Superfamily-SCOP UBA_like UniProtKB/TrEMBL
UniProt A0A8I5ZQ01 ENTREZGENE
  A0A8I6AFT0_RAT UniProtKB/TrEMBL
  A0A8I6AK92_RAT UniProtKB/TrEMBL
  A0A8J8XEJ8 ENTREZGENE, UniProtKB/TrEMBL
  A6JJN5 ENTREZGENE, UniProtKB/TrEMBL
  F1MAI9 ENTREZGENE
  Q2M1K7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1MAI9 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-13 Ilrun  inflammation and lipid regulator with UBA-like and NBR1-like domains  LOC294154  similar to chromosome 6 open reading frame 106 isoform a  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-06-15 LOC294154  similar to chromosome 6 open reading frame 106 isoform a  RGD1310148  similar to hypothetical protein MGC4614   Data merged from RGD:1310148 1643240 APPROVED
2008-04-30 RGD1310148  similar to hypothetical protein MGC4614   RGD1310148_predicted  similar to hypothetical protein MGC4614 (predicted)  'predicted' is removed 2292626 APPROVED
2006-02-09 LOC294154  similar to chromosome 6 open reading frame 106 isoform a      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1310148_predicted  similar to hypothetical protein MGC4614 (predicted)  LOC294294_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC294294_predicted  similar to hypothetical protein MGC4614 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL