Slc13a4 (solute carrier family 13 member 4) - Rat Genome Database

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Gene: Slc13a4 (solute carrier family 13 member 4) Rattus norvegicus
Analyze
Symbol: Slc13a4
Name: solute carrier family 13 member 4
RGD ID: 1359715
Description: Predicted to enable sodium:sulfate symporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human SLC13A4 (solute carrier family 13 member 4); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: sodium sulfate cotransporter-2; solute carrier family 13 (sodium/sulfate symporter), member 4; solute carrier family 13 (sodium/sulfate symporters), member 4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8464,910,505 - 64,955,986 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl464,910,507 - 64,955,986 (-)EnsemblGRCr8
mRatBN7.2463,943,369 - 63,988,852 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl463,943,395 - 63,988,857 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx468,902,588 - 68,939,998 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0464,818,212 - 64,855,622 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0463,220,720 - 63,258,128 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0462,796,732 - 62,841,053 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl462,797,677 - 62,840,357 (-)Ensemblrn6Rnor6.0
Rnor_5.0462,519,667 - 62,563,986 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4462,679,593 - 62,724,547 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera458,992,508 - 59,035,406 (-)NCBICelera
RGSC_v3.1462,955,724 - 63,000,677 (-)NCBI
Cytogenetic Map4q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-hydroxypropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
amiodarone  (ISO)
aristolochic acid A  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
benzo[a]pyrene  (ISO)
Benzo[ghi]perylene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bromobenzene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
chromium atom  (EXP)
cobalt dichloride  (EXP)
diazinon  (EXP)
dibenz[a,h]anthracene  (ISO)
Dibutyl phosphate  (ISO)
diiodine  (ISO)
dorsomorphin  (ISO)
Echimidine  (EXP)
elemental selenium  (EXP)
endosulfan  (EXP)
entinostat  (ISO)
ethylparaben  (ISO)
exemestane  (ISO)
fluoxetine  (EXP)
gentamycin  (EXP)
Heliotrine  (EXP)
Licochalcone B  (ISO)
molybdenum atom  (EXP)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
phenylmercury acetate  (ISO)
phosphorus atom  (EXP)
phosphorus(.)  (EXP)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
rac-lactic acid  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
selenium atom  (EXP)
Senkirkine  (EXP)
sodium arsenite  (ISO)
sodium atom  (EXP)
sodium dichromate  (EXP)
sulfates  (EXP)
tetrachloromethane  (EXP)
thalidomide  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triphenyl phosphate  (EXP)
valproic acid  (ISO)
vancomycin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15889308   PMID:17038798  


Genomics

Comparative Map Data
Slc13a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8464,910,505 - 64,955,986 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl464,910,507 - 64,955,986 (-)EnsemblGRCr8
mRatBN7.2463,943,369 - 63,988,852 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl463,943,395 - 63,988,857 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx468,902,588 - 68,939,998 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0464,818,212 - 64,855,622 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0463,220,720 - 63,258,128 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0462,796,732 - 62,841,053 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl462,797,677 - 62,840,357 (-)Ensemblrn6Rnor6.0
Rnor_5.0462,519,667 - 62,563,986 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4462,679,593 - 62,724,547 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera458,992,508 - 59,035,406 (-)NCBICelera
RGSC_v3.1462,955,724 - 63,000,677 (-)NCBI
Cytogenetic Map4q22NCBI
SLC13A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387135,681,231 - 135,728,186 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7135,681,231 - 135,729,258 (-)Ensemblhg38GRCh38
GRCh377135,365,979 - 135,412,934 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367135,016,525 - 135,063,473 (-)NCBIBuild 36Build 36hg18NCBI36
Build 347134,823,243 - 134,870,188NCBI
Celera7130,103,444 - 130,150,391 (-)NCBICelera
Cytogenetic Map7q33NCBI
HuRef7129,668,796 - 129,716,167 (-)NCBIHuRef
CHM1_17135,299,894 - 135,346,826 (-)NCBICHM1_1
T2T-CHM13v2.07136,988,529 - 137,035,495 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27134,710,411 - 134,757,363 (-)NCBI
Slc13a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39635,244,888 - 35,285,061 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl635,244,892 - 35,285,066 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38635,267,953 - 35,308,126 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl635,267,957 - 35,308,131 (-)Ensemblmm10GRCm38
MGSCv37635,217,953 - 35,258,126 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36635,198,110 - 35,238,278 (-)NCBIMGSCv36mm8
Celera635,268,639 - 35,308,823 (-)NCBICelera
Cytogenetic Map6B1NCBI
cM Map615.26NCBI
Slc13a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554947,014,252 - 7,055,514 (+)Ensembl
ChiLan1.0NW_0049554947,013,577 - 7,057,767 (+)NCBIChiLan1.0ChiLan1.0
SLC13A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26172,507,573 - 172,555,237 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1724,516,316 - 24,564,967 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07127,653,170 - 127,700,080 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17140,150,963 - 140,197,418 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7140,150,963 - 140,197,418 (-)EnsemblpanPan2panpan1.1
SLC13A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11612,539,369 - 12,581,155 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1612,540,263 - 12,579,949 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1613,552,201 - 13,592,905 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01612,519,168 - 12,559,926 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1612,519,260 - 12,559,921 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11612,961,771 - 13,002,418 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01612,061,603 - 12,102,305 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01612,200,417 - 12,241,091 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Slc13a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511818,722,716 - 18,769,513 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936592454,191 - 497,090 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936592450,237 - 497,050 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC13A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1813,593,756 - 13,636,180 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11813,593,735 - 13,641,649 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21814,326,517 - 14,368,472 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC13A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121104,359,577 - 104,407,905 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21104,363,792 - 104,405,562 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660721,253,811 - 1,300,460 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc13a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476515,963,047 - 16,000,929 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476515,960,269 - 16,001,700 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Slc13a4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v16104,359,684 - 104,395,833 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Slc13a4
229 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:365
Count of miRNA genes:203
Interacting mature miRNAs:235
Transcripts:ENSRNOT00000059892
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)43511329080113290Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)439431983123203361Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)459753119104753119Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44140057786400577Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)457613242102613242Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44442502489425024Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)44049044275726188Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45807987582597589Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)458817672103817672Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45808014680212111Rat
2312569Pur19Proteinuria QTL 193.40.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)459836842104836842Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)43726957782269577Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)46104105794638356Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)44047145375939996Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44140060386400603Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)43044896182336920Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)464209744109209744Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463245026129846354Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)44140057786400577Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42192515166925151Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)451085655113588029Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45807987592690793Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)440490442117737312Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463224393108224393Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46390045888813920Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)457613242102613242Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)433538597116185060Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45960331980216952Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)457613242102613242Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat

Markers in Region
RH129719  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2463,943,477 - 63,943,663 (+)MAPPERmRatBN7.2
Rnor_6.0462,796,843 - 62,797,028NCBIRnor6.0
Rnor_5.0462,519,778 - 62,519,963UniSTSRnor5.0
RGSC_v3.4462,678,759 - 62,678,944UniSTSRGSC3.4
Celera458,991,674 - 58,991,859UniSTS
RH 3.4 Map4394.4UniSTS
Cytogenetic Map4q22UniSTS
BI295690  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2463,944,169 - 63,944,319 (+)MAPPERmRatBN7.2
Rnor_6.0462,797,535 - 62,797,684NCBIRnor6.0
Rnor_5.0462,520,470 - 62,520,619UniSTSRnor5.0
RGSC_v3.4462,679,451 - 62,679,600UniSTSRGSC3.4
Celera458,992,366 - 58,992,515UniSTS
RH 3.4 Map4393.4UniSTS
Cytogenetic Map4q22UniSTS
BF416409  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2463,973,922 - 63,974,131 (+)MAPPERmRatBN7.2
Rnor_6.0462,825,935 - 62,826,143NCBIRnor6.0
Rnor_5.0462,548,875 - 62,549,083UniSTSRnor5.0
RGSC_v3.4462,710,303 - 62,710,511UniSTSRGSC3.4
Celera459,021,172 - 59,021,380UniSTS
RH 3.4 Map4398.51UniSTS
Cytogenetic Map4q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 65 151 91 90 59 81 59 6 330 177 10 127 70 90 31 8 8

Sequence


Ensembl Acc Id: ENSRNOT00000059892   ⟹   ENSRNOP00000056637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl464,910,507 - 64,955,302 (-)Ensembl
mRatBN7.2 Ensembl463,943,395 - 63,988,168 (-)Ensembl
Rnor_6.0 Ensembl462,797,677 - 62,840,357 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110059   ⟹   ENSRNOP00000085109
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl463,943,395 - 63,988,168 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117863   ⟹   ENSRNOP00000081011
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl464,910,507 - 64,955,986 (-)Ensembl
mRatBN7.2 Ensembl463,943,395 - 63,988,857 (-)Ensembl
RefSeq Acc Id: NM_001412878   ⟹   NP_001399807
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8464,910,507 - 64,955,986 (-)NCBI
mRatBN7.2463,943,369 - 63,988,852 (-)NCBI
RefSeq Acc Id: XM_039108261   ⟹   XP_038964189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8464,910,505 - 64,955,986 (-)NCBI
mRatBN7.2463,943,369 - 63,988,852 (-)NCBI
RefSeq Acc Id: XM_039108262   ⟹   XP_038964190
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8464,910,505 - 64,941,339 (-)NCBI
mRatBN7.2463,943,369 - 63,974,156 (-)NCBI
Ensembl Acc Id: ENSRNOP00000056637   ⟸   ENSRNOT00000059892
RefSeq Acc Id: XP_038964189   ⟸   XM_039108261
- Peptide Label: isoform X1
- UniProtKB: Q5EC47 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964190   ⟸   XM_039108262
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000085109   ⟸   ENSRNOT00000110059
Ensembl Acc Id: ENSRNOP00000081011   ⟸   ENSRNOT00000117863
RefSeq Acc Id: NP_001399807   ⟸   NM_001412878
- UniProtKB: A0A8I5ZU73 (UniProtKB/TrEMBL),   A6IEP0 (UniProtKB/TrEMBL),   Q5EC47 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5EC47-F1-model_v2 AlphaFold Q5EC47 1-689 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359715 AgrOrtholog
BioCyc Gene G2FUF-45244 BioCyc
Ensembl Genes ENSRNOG00000011184 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000059892 ENTREZGENE
  ENSRNOT00000059892.6 UniProtKB/TrEMBL
  ENSRNOT00000117863 ENTREZGENE
  ENSRNOT00000117863.2 UniProtKB/TrEMBL
InterPro Na/sul_symport UniProtKB/TrEMBL
NCBI Gene 503568 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 13 MEMBER UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 13 MEMBER 4 UniProtKB/TrEMBL
Pfam Na_sulph_symp UniProtKB/TrEMBL
PhenoGen Slc13a4 PhenoGen
RatGTEx ENSRNOG00000011184 RatGTEx
UniProt A0A8I5ZU73 ENTREZGENE, UniProtKB/TrEMBL
  A6IEP0 ENTREZGENE, UniProtKB/TrEMBL
  Q5EC47 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-25 Slc13a4  solute carrier family 13 member 4  Slc13a4  solute carrier family 13 (sodium/sulfate symporter), member 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-02 Slc13a4  solute carrier family 13 (sodium/sulfate symporter), member 4  Slc13a4  solute carrier family 13 (sodium/sulfate symporters), member 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 Slc13a4  solute carrier family 13 (sodium/sulfate symporters), member 4      Symbol and Name status set to provisional 70820 PROVISIONAL