Slc13a4 (solute carrier family 13 member 4) - Rat Genome Database

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Gene: Slc13a4 (solute carrier family 13 member 4) Heterocephalus glaber
Analyze
Symbol: Slc13a4
Name: solute carrier family 13 member 4
RGD ID: 18933090
Description: ENCODES a protein that exhibits sodium:sulfate symporter activity (ortholog); INVOLVED IN sodium ion transmembrane transport (inferred); sodium ion transport (inferred); transmembrane transport (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); Chemical and Drug Induced Liver Injury (ortholog); liver cirrhosis (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 13 (sodium/sulfate symporters), member 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476515,963,047 - 16,000,929 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476515,960,269 - 16,001,700 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc13a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476515,963,047 - 16,000,929 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476515,960,269 - 16,001,700 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC13A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387135,681,231 - 135,728,186 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7135,681,231 - 135,729,258 (-)EnsemblGRCh38hg38GRCh38
GRCh377135,365,979 - 135,412,934 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367135,016,525 - 135,063,473 (-)NCBINCBI36Build 36hg18NCBI36
Build 347134,823,243 - 134,870,188NCBI
Celera7130,103,444 - 130,150,391 (-)NCBICelera
Cytogenetic Map7q33NCBI
HuRef7129,668,796 - 129,716,167 (-)NCBIHuRef
CHM1_17135,299,894 - 135,346,826 (-)NCBICHM1_1
T2T-CHM13v2.07136,988,529 - 137,035,495 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27134,710,411 - 134,757,363 (-)NCBI
Slc13a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39635,244,888 - 35,285,061 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl635,244,892 - 35,285,066 (-)EnsemblGRCm39 Ensembl
GRCm38635,267,953 - 35,308,126 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl635,267,957 - 35,308,131 (-)EnsemblGRCm38mm10GRCm38
MGSCv37635,217,953 - 35,258,126 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36635,198,110 - 35,238,278 (-)NCBIMGSCv36mm8
Celera635,268,639 - 35,308,823 (-)NCBICelera
Cytogenetic Map6B1NCBI
cM Map615.26NCBI
Slc13a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8464,910,505 - 64,955,986 (-)NCBIGRCr8
mRatBN7.2463,943,369 - 63,988,852 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl463,943,395 - 63,988,857 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx468,902,588 - 68,939,998 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0464,818,212 - 64,855,622 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0463,220,720 - 63,258,128 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0462,796,732 - 62,841,053 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl462,797,677 - 62,840,357 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0462,519,667 - 62,563,986 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4462,679,593 - 62,724,547 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1462,955,724 - 63,000,677 (-)NCBI
Celera458,992,508 - 59,035,406 (-)NCBICelera
Cytogenetic Map4q22NCBI
Slc13a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554947,014,252 - 7,055,514 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554947,013,577 - 7,057,767 (+)NCBIChiLan1.0ChiLan1.0
SLC13A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26172,507,573 - 172,555,237 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1724,516,316 - 24,564,967 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07127,653,170 - 127,700,080 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17140,150,963 - 140,197,418 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7140,150,963 - 140,197,418 (-)Ensemblpanpan1.1panPan2
SLC13A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11612,539,369 - 12,581,155 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1612,540,263 - 12,579,949 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1613,552,201 - 13,592,905 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01612,519,168 - 12,559,926 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1612,519,260 - 12,559,921 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11612,961,771 - 13,002,418 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01612,061,603 - 12,102,305 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01612,200,417 - 12,241,091 (+)NCBIUU_Cfam_GSD_1.0
Slc13a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511818,722,716 - 18,769,513 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936592454,191 - 497,090 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936592450,237 - 497,050 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC13A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1813,593,756 - 13,636,180 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11813,593,735 - 13,641,649 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21814,326,517 - 14,368,472 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC13A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121104,359,577 - 104,407,905 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21104,363,792 - 104,405,562 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660721,253,811 - 1,300,460 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000006882   ⟹   ENSHGLP00000006799
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476515,963,047 - 16,000,929 (-)Ensembl
RefSeq Acc Id: XM_004851232   ⟹   XP_004851289
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476515,960,269 - 16,000,929 (-)NCBI
RefSeq Acc Id: XM_021263639   ⟹   XP_021119298
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476515,960,269 - 16,001,700 (-)NCBI
RefSeq Acc Id: XM_021263640   ⟹   XP_021119299
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476515,966,373 - 16,001,699 (-)NCBI
RefSeq Acc Id: XR_002397116
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476515,963,064 - 16,001,698 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004851289 (Get FASTA)   NCBI Sequence Viewer  
  XP_021119298 (Get FASTA)   NCBI Sequence Viewer  
  XP_021119299 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB12071 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000006799
  ENSHGLP00100041796
Reference Protein Sequences
RefSeq Acc Id: XP_021119298   ⟸   XM_021263639
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004851289   ⟸   XM_004851232
- Peptide Label: isoform X1
- UniProtKB: G5BS10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021119299   ⟸   XM_021263640
- Peptide Label: isoform X3
RefSeq Acc Id: ENSHGLP00000006799   ⟸   ENSHGLT00000006882


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004963 Ensembl, ENTREZGENE
  ENSHGLG00100010731 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000006882 ENTREZGENE
  ENSHGLT00100071335 UniProtKB/TrEMBL
InterPro SLC13A/DASS UniProtKB/TrEMBL
KEGG Report hgl:101712504 UniProtKB/TrEMBL
NCBI Gene Slc13a4 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 13 MEMBER UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 13 MEMBER 4 UniProtKB/TrEMBL
Pfam Na_sulph_symp UniProtKB/TrEMBL
UniProt G5BS10 ENTREZGENE, UniProtKB/TrEMBL