Mapre3 (microtubule-associated protein, RP/EB family, member 3) - Rat Genome Database

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Gene: Mapre3 (microtubule-associated protein, RP/EB family, member 3) Rattus norvegicus
Analyze
Symbol: Mapre3
Name: microtubule-associated protein, RP/EB family, member 3
RGD ID: 1359297
Description: Predicted to enable several functions, including microtubule plus-end binding activity; protein serine/threonine kinase activator activity; and protein serine/threonine kinase binding activity. Involved in behavioral response to cocaine and positive regulation of dendritic spine morphogenesis. Located in neuron to neuron synapse. Orthologous to human MAPRE3 (microtubule associated protein RP/EB family member 3); INTERACTS WITH 1,2-dimethylhydrazine; 2,6-dinitrotoluene; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EB1 protein family member 3; EB3; EBF3; end-binding protein 3; MGC94312; microtubule-associated protein RP/EB family member 3; RP3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,233,736 - 31,278,626 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl631,233,736 - 31,278,775 (-)EnsemblGRCr8
mRatBN7.2625,513,800 - 25,558,876 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,513,800 - 25,558,881 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx625,814,084 - 25,825,198 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0626,129,947 - 26,141,061 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,609,146 - 25,620,313 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0626,878,738 - 26,923,459 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl626,878,744 - 26,889,882 (-)Ensemblrn6Rnor6.0
Rnor_5.0636,695,659 - 36,739,831 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4625,496,282 - 25,506,449 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera625,004,257 - 25,015,289 (-)NCBICelera
RGSC_v3.1625,499,234 - 25,509,402 (-)NCBI
Cytogenetic Map6q14NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,6-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
all-trans-retinoic acid  (ISO)
antimycin A  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
deguelin  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dichloroacetic acid  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
diquat  (ISO)
doxorubicin  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (EXP)
ivermectin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
N(4)-hydroxycytidine  (ISO)
okadaic acid  (ISO)
olesoxime  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (ISO)
phenobarbital  (ISO)
phenytoin  (EXP)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pyrimidifen  (ISO)
rifampicin  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
thioacetamide  (EXP)
trichloroethene  (EXP)
triphenyl phosphate  (EXP,ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Synaptic Microtubule-Associated Protein EB3 and SRC Phosphorylation Mediate Structural and Behavioral Adaptations During Withdrawal From Cocaine Self-Administration. Calipari ES, etal., J Neurosci. 2019 Jul 17;39(29):5634-5646. doi: 10.1523/JNEUROSCI.0024-19.2019. Epub 2019 May 15.
2. Herpes simplex virus type 1 capsid protein VP26 interacts with dynein light chains RP3 and Tctex1 and plays a role in retrograde cellular transport. Douglas MW, etal., J Biol Chem 2004 Jul 2;279(27):28522-30. Epub 2004 Apr 26.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. End-binding proteins EB3 and EB1 link microtubules to ankyrin G in the axon initial segment. Leterrier C, etal., Proc Natl Acad Sci U S A. 2011 May 24;108(21):8826-31. Epub 2011 May 6.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. EB3, a novel member of the EB1 family preferentially expressed in the central nervous system, binds to a CNS-specific APC homologue. Nakagawa H, etal., Oncogene 2000 Jan 13;19(2):210-6.
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:16148041   PMID:17310996   PMID:21248129   PMID:22871113   PMID:23159740   PMID:23509069   PMID:24145165   PMID:26323690   PMID:27107012   PMID:28131823   PMID:30053369  
PMID:34478582  


Genomics

Comparative Map Data
Mapre3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,233,736 - 31,278,626 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl631,233,736 - 31,278,775 (-)EnsemblGRCr8
mRatBN7.2625,513,800 - 25,558,876 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,513,800 - 25,558,881 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx625,814,084 - 25,825,198 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0626,129,947 - 26,141,061 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,609,146 - 25,620,313 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0626,878,738 - 26,923,459 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl626,878,744 - 26,889,882 (-)Ensemblrn6Rnor6.0
Rnor_5.0636,695,659 - 36,739,831 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4625,496,282 - 25,506,449 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera625,004,257 - 25,015,289 (-)NCBICelera
RGSC_v3.1625,499,234 - 25,509,402 (-)NCBI
Cytogenetic Map6q14NCBI
MAPRE3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38226,970,637 - 27,027,219 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl226,970,633 - 27,027,219 (+)Ensemblhg38GRCh38
GRCh37227,193,505 - 27,250,087 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36227,047,029 - 27,103,591 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34227,105,175 - 27,161,737NCBI
Celera227,039,865 - 27,096,433 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef226,935,669 - 26,992,235 (+)NCBIHuRef
CHM1_1227,123,437 - 27,179,999 (+)NCBICHM1_1
T2T-CHM13v2.0227,012,305 - 27,068,902 (+)NCBIT2T-CHM13v2.0
Mapre3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39530,972,075 - 31,023,447 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl530,971,985 - 31,023,450 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38530,814,606 - 30,866,106 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl530,814,641 - 30,866,106 (+)Ensemblmm10GRCm38
MGSCv37531,117,129 - 31,168,479 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36531,091,337 - 31,142,687 (+)NCBIMGSCv36mm8
Celera528,293,934 - 28,345,490 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.9NCBI
Mapre3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554699,000,940 - 9,005,454 (+)Ensembl
ChiLan1.0NW_0049554698,947,324 - 9,005,401 (+)NCBIChiLan1.0ChiLan1.0
MAPRE3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,488,346 - 99,544,668 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,492,313 - 99,548,635 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A26,970,010 - 27,026,223 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A27,059,002 - 27,115,223 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A27,102,780 - 27,115,223 (+)EnsemblpanPan2panpan1.1
MAPRE3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11720,971,868 - 21,027,634 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1721,015,464 - 21,026,845 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1720,864,475 - 20,920,006 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01721,292,052 - 21,347,806 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1721,291,904 - 21,349,898 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11720,980,681 - 21,034,969 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01720,991,765 - 21,046,054 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01721,038,213 - 21,092,479 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mapre3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,302,728 - 65,321,420 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,518,116 - 5,536,952 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,518,124 - 5,522,760 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAPRE3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3112,084,469 - 112,136,061 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.13112,084,467 - 112,136,079 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23119,083,232 - 119,135,332 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MAPRE3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11480,598,660 - 80,610,519 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1480,598,029 - 80,656,243 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604531,483,308 - 31,541,490 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mapre3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247389,131,768 - 9,136,080 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247389,063,795 - 9,136,080 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mapre3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1723,219,321 - 23,263,292 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mapre3
167 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:250
Count of miRNA genes:168
Interacting mature miRNAs:183
Transcripts:ENSRNOT00000011874
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6144788383Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6140163351Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)62228825732981219Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 88 59 6 352 188 11 139 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000011874   ⟹   ENSRNOP00000011877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl631,233,736 - 31,244,903 (-)Ensembl
mRatBN7.2 Ensembl625,513,800 - 25,524,967 (-)Ensembl
Rnor_6.0 Ensembl626,878,744 - 26,889,882 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113201   ⟹   ENSRNOP00000088597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl631,234,065 - 31,278,775 (-)Ensembl
mRatBN7.2 Ensembl625,513,811 - 25,558,881 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113970   ⟹   ENSRNOP00000088427
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl625,513,810 - 25,558,814 (-)Ensembl
RefSeq Acc Id: NM_001007656   ⟹   NP_001007657
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8631,233,736 - 31,244,903 (-)NCBI
mRatBN7.2625,513,800 - 25,524,967 (-)NCBI
Rnor_6.0626,878,738 - 26,889,882 (-)NCBI
Rnor_5.0636,695,659 - 36,739,831 (-)NCBI
RGSC_v3.4625,496,282 - 25,506,449 (-)RGD
Celera625,004,257 - 25,015,289 (-)RGD
Sequence:
RefSeq Acc Id: XM_008764512   ⟹   XP_008762734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8631,233,738 - 31,278,626 (-)NCBI
mRatBN7.2625,513,802 - 25,558,827 (-)NCBI
Rnor_6.0626,878,740 - 26,923,459 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764513   ⟹   XP_008762735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8631,233,738 - 31,278,626 (-)NCBI
mRatBN7.2625,513,802 - 25,558,876 (-)NCBI
Rnor_6.0626,878,740 - 26,923,459 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039111914   ⟹   XP_038967842
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8631,233,738 - 31,244,790 (-)NCBI
mRatBN7.2625,513,802 - 25,525,004 (-)NCBI
RefSeq Acc Id: XR_010052059
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8631,234,509 - 31,278,626 (-)NCBI
RefSeq Acc Id: NP_001007657   ⟸   NM_001007656
- UniProtKB: Q5XIT1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008762735   ⟸   XM_008764513
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A6V2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762734   ⟸   XM_008764512
- Peptide Label: isoform X1
- UniProtKB: Q5XIT1 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011877   ⟸   ENSRNOT00000011874
RefSeq Acc Id: XP_038967842   ⟸   XM_039111914
- Peptide Label: isoform X1
- UniProtKB: Q5XIT1 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSRNOP00000088597   ⟸   ENSRNOT00000113201
Ensembl Acc Id: ENSRNOP00000088427   ⟸   ENSRNOT00000113970
Protein Domains
Calponin-homology (CH)   EB1 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIT1-F1-model_v2 AlphaFold Q5XIT1 1-281 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694460
Promoter ID:EPDNEW_R4983
Type:initiation region
Name:Mapre3_1
Description:microtubule-associated protein, RP/EB family, member 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0626,889,901 - 26,889,961EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359297 AgrOrtholog
BioCyc Gene G2FUF-38326 BioCyc
Ensembl Genes ENSRNOG00000008961 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000011874 ENTREZGENE
  ENSRNOT00000011874.5 UniProtKB/Swiss-Prot
  ENSRNOT00000113201 ENTREZGENE
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot
  1.20.5.1430 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7132546 IMAGE-MGC_LOAD
InterPro CH-domain UniProtKB/Swiss-Prot
  CH_dom_sf UniProtKB/Swiss-Prot
  EB1_C UniProtKB/Swiss-Prot
  EB1_C_sf UniProtKB/Swiss-Prot
  MAPRE UniProtKB/Swiss-Prot
KEGG Report rno:298848 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94312 IMAGE-MGC_LOAD
NCBI Gene 298848 ENTREZGENE
PANTHER PTHR10623 UniProtKB/Swiss-Prot
Pfam EB1 UniProtKB/Swiss-Prot
  PF00307 UniProtKB/Swiss-Prot
PhenoGen Mapre3 PhenoGen
PROSITE EB1_C UniProtKB/Swiss-Prot
  PS50021 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000008961 RatGTEx
Superfamily-SCOP SSF140612 UniProtKB/Swiss-Prot
  SSF47576 UniProtKB/Swiss-Prot
UniProt A0A8I6A6V2 ENTREZGENE, UniProtKB/TrEMBL
  A6HAC1_RAT UniProtKB/TrEMBL
  MARE3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Mapre3  microtubule-associated protein, RP/EB family, member 3      Symbol and Name status set to approved 1299863 APPROVED
2005-07-29 Mapre3  microtubule-associated protein, RP/EB family, member 3      Symbol and Name status set to provisional 70820 PROVISIONAL