Mapre3 (microtubule associated protein RP/EB family member 3) - Rat Genome Database

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Gene: Mapre3 (microtubule associated protein RP/EB family member 3) Chinchilla lanigera
Analyze
Symbol: Mapre3
Name: microtubule associated protein RP/EB family member 3
RGD ID: 9065993
Description: ENCODES a protein that exhibits identical protein binding (ortholog); microtubule binding (ortholog); microtubule plus-end binding (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); regulation of microtubule polymerization (ortholog); ASSOCIATED WITH polycystic ovary syndrome (ortholog); Spontaneous Abortions (ortholog); Tatton-Brown-Rahman syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic microtubule (ortholog); microtubule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: microtubule-associated protein RP/EB family member 3; microtubule-associated protein, RP/EB family, member 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554699,000,940 - 9,005,454 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554698,947,324 - 9,005,401 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Mapre3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554699,000,940 - 9,005,454 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554698,947,324 - 9,005,401 (+)NCBIChiLan1.0ChiLan1.0
MAPRE3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38226,970,637 - 27,027,219 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl226,970,637 - 27,027,219 (+)EnsemblGRCh38hg38GRCh38
GRCh37227,193,505 - 27,250,087 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36227,047,029 - 27,103,591 (+)NCBINCBI36Build 36hg18NCBI36
Build 34227,105,175 - 27,161,737NCBI
Celera227,039,865 - 27,096,433 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef226,935,669 - 26,992,235 (+)NCBIHuRef
CHM1_1227,123,437 - 27,179,999 (+)NCBICHM1_1
T2T-CHM13v2.0227,012,305 - 27,068,902 (+)NCBIT2T-CHM13v2.0
Mapre3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39530,972,075 - 31,023,447 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl530,971,985 - 31,023,450 (+)EnsemblGRCm39 Ensembl
GRCm38530,814,606 - 30,866,106 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl530,814,641 - 30,866,106 (+)EnsemblGRCm38mm10GRCm38
MGSCv37531,117,129 - 31,168,479 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36531,091,337 - 31,142,687 (+)NCBIMGSCv36mm8
Celera528,293,934 - 28,345,490 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.9NCBI
Mapre3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,233,736 - 31,278,626 (-)NCBIGRCr8
mRatBN7.2625,513,800 - 25,558,876 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,513,800 - 25,558,881 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx625,814,084 - 25,825,198 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0626,129,947 - 26,141,061 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,609,146 - 25,620,313 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0626,878,738 - 26,923,459 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl626,878,744 - 26,889,882 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0636,695,659 - 36,739,831 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,496,282 - 25,506,449 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1625,499,234 - 25,509,402 (-)NCBI
Celera625,004,257 - 25,015,289 (-)NCBICelera
Cytogenetic Map6q14NCBI
MAPRE3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,488,346 - 99,544,668 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,492,313 - 99,548,635 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A26,970,010 - 27,026,223 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A27,059,002 - 27,115,223 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A27,102,780 - 27,115,223 (+)Ensemblpanpan1.1panPan2
MAPRE3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11720,971,868 - 21,027,634 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1721,015,464 - 21,026,845 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1720,864,475 - 20,920,006 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01721,292,052 - 21,347,806 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1721,291,904 - 21,349,898 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11720,980,681 - 21,034,969 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01720,991,765 - 21,046,054 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01721,038,213 - 21,092,479 (+)NCBIUU_Cfam_GSD_1.0
Mapre3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,302,728 - 65,321,420 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,518,116 - 5,536,952 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,518,124 - 5,522,760 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAPRE3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3112,084,469 - 112,136,061 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13112,084,467 - 112,136,079 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23119,083,232 - 119,135,332 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MAPRE3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11480,598,660 - 80,610,519 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1480,598,029 - 80,656,243 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604531,483,308 - 31,541,490 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mapre3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247389,131,768 - 9,136,080 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247389,063,795 - 9,136,080 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000025439   ⟹   ENSCLAP00000025193
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554699,000,940 - 9,005,454 (+)Ensembl
RefSeq Acc Id: XM_013522658   ⟹   XP_013378112
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554698,947,324 - 9,005,401 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013378112 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000025193
  ENSCLAP00000025193.1
Reference Protein Sequences
RefSeq Acc Id: XP_013378112   ⟸   XM_013522658
- UniProtKB: A0A8C2W4T2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000025193   ⟸   ENSCLAT00000025439
Protein Domains
Calponin-homology (CH)   EB1 C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017298 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025439 ENTREZGENE
  ENSCLAT00000025439.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  1.20.5.1430 UniProtKB/TrEMBL
InterPro CH-domain UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  EB1_C UniProtKB/TrEMBL
  EB1_C_sf UniProtKB/TrEMBL
  MAPRE UniProtKB/TrEMBL
NCBI Gene Mapre3 ENTREZGENE
PANTHER PTHR10623 UniProtKB/TrEMBL
  PTHR10623:SF10 UniProtKB/TrEMBL
Pfam EB1 UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
PROSITE EB1_C UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
Superfamily-SCOP SSF140612 UniProtKB/TrEMBL
  SSF47576 UniProtKB/TrEMBL
UniProt A0A8C2W4T2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Mapre3  microtubule associated protein RP/EB family member 3    microtubule-associated protein, RP/EB family, member 3  Symbol and/or name change 5135510 APPROVED