Klf2 (KLF transcription factor 2) - Rat Genome Database

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Gene: Klf2 (KLF transcription factor 2) Rattus norvegicus
Analyze
Symbol: Klf2
Name: KLF transcription factor 2
RGD ID: 1359220
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including cellular response to cytokine stimulus; cellular response to endothelin; and regulation of gene expression. Predicted to be located in chromatin and nucleus. Orthologous to human KLF2 (KLF transcription factor 2); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Krueppel-like factor 2; Kruppel-like factor; Kruppel-like factor 2; Kruppel-like factor 2 (lung); Lklf; lung krueppel-like factor; lung Kruppel-like factor
RGD Orthologs
Human
Mouse
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81617,555,136 - 17,557,768 (-)NCBIGRCr8
mRatBN7.21617,521,107 - 17,523,739 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1617,514,552 - 17,523,944 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1617,587,223 - 17,589,173 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01618,720,530 - 18,722,483 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01617,640,143 - 17,642,093 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,223,087 - 19,225,037 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,223,087 - 19,225,037 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,084,196 - 19,086,146 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41617,941,780 - 17,943,730 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11617,941,777 - 17,943,728 (-)NCBI
Celera1617,739,313 - 17,741,263 (-)NCBICelera
Cytogenetic Map16p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Original Reference(s)
Klf2RatCOVID-19  ISOKLF2 (Homo sapiens)9068941mRNA:decreased expression:peripheral blood mononuclear cell (human)RGDPMID:32228226 and REF_RGD_ID:28912744
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Original Reference(s)
Klf2Ratprimary immunodeficiency disease  ISOKLF2 (Homo sapiens)8554872ClinVar Annotator: match by term: Inherited Immunodeficiency DiseasesClinVar 
Object Symbol
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Original Reference(s)
Klf2RatColorectal Neoplasms  ISOKLF2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:30510241
Klf2Ratlung disease  ISOKLF2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21053160

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Original Reference(s)
Klf2Rat1,2-dimethylhydrazine multiple interactionsISOKlf2 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of KLF2 mRNACTDPMID:22206623
Klf2Rat17alpha-ethynylestradiol multiple interactionsISOKlf2 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of KLF2 mRNACTDPMID:17942748
Klf2Rat17alpha-ethynylestradiol decreases expressionEXP 6480464Ethinyl Estradiol results in decreased expression of KLF2 mRNACTDPMID:17108234
Klf2Rat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of KLF2 mRNACTDPMID:32145629
Klf2Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOKlf2 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of KLF2 mRNACTDPMID:17337447 more ...
Klf2Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of KLF2 mRNACTDPMID:32109520 and PMID:33387578
Klf2Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOKlf2 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of KLF2 mRNACTDPMID:21570461 and PMID:24680724
Klf2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of KLF2 mRNACTDPMID:23238561
Klf2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOKlf2 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of KLF2 mRNACTDPMID:20159946
Klf2Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOKlf2 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of KLF2 mRNA and AHR protein affects the reaction [Tetrachlorodibenzodioxin results in increased expression of KLF2 mRNA]CTDPMID:17337447 and PMID:17942748
Klf2Rat2-butoxyethanol decreases expressionISOKlf2 (Mus musculus)6480464n-butoxyethanol results in decreased expression of KLF2 mRNACTDPMID:19812364
Klf2Rat3,3',5,5'-tetrabromobisphenol A decreases expressionISOKlf2 (Mus musculus)6480464tetrabromobisphenol A results in decreased expression of KLF2 mRNACTDPMID:25172293
Klf2Rat3,4-methylenedioxymethamphetamine decreases expressionISOKlf2 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of KLF2 mRNACTDPMID:20188158
Klf2Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOKlf2 (Mus musculus)6480464[1-Methyl-3-isobutylxanthine co-treated with Dexamethasone co-treated with INS1 protein] results in decreased expression of KLF2 mRNA and silybin inhibits the reaction [[1-Methyl-3-isobutylxanthine co-treated with Dexamethasone co-treated with INS1 protein] results in decreased expression of KLF2 mRNA]CTDPMID:25559859
Klf2Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOKLF2 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of KLF2 mRNACTDPMID:28628672
Klf2Rat3-methylcholanthrene increases expressionISOKlf2 (Mus musculus)6480464Methylcholanthrene results in increased expression of KLF2 mRNACTDPMID:20713471
Klf2Rat4,4'-diaminodiphenylmethane increases expressionISOKlf2 (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in increased expression of KLF2 mRNACTDPMID:18648102
Klf2Rat4,4'-sulfonyldiphenol affects methylationISOKlf2 (Mus musculus)6480464bisphenol S affects the methylation of KLF2 geneCTDPMID:31683443
Klf2Rat4-aminobenzohydrazide multiple interactionsISOKLF2 (Homo sapiens)64804644-aminobenzhydrazide inhibits the reaction [hydroxyhydroquinone results in increased expression of KLF2 mRNA]CTDPMID:24530881
Klf2Rat4-hydroxyphenyl retinamide increases expressionISOKlf2 (Mus musculus)6480464Fenretinide results in increased expression of KLF2 mRNACTDPMID:28973697

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Biological Process
1 to 20 of 49 rows

  
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Original Reference(s)
Klf2Ratcell morphogenesis acts_upstream_of_or_withinIEAUniProtKB:Q60843 and ensembl:ENSMUSP000000648231600115GO_REF:0000107EnsemblGO_REF:0000107
Klf2Ratcell morphogenesis acts_upstream_of_or_withinISOKlf2 (Mus musculus)1624291MGI:3047647 PMID:15947087RGDPMID:15947087
Klf2Ratcellular response to endothelin  IEP 2316543 RGD 
Klf2Ratcellular response to fluid shear stress involved_inISOKLF2 (Homo sapiens)1624291 PMID:22327366RGDPMID:22327366
Klf2Ratcellular response to fluid shear stress involved_inIEAUniProtKB:Q9Y5W3 and ensembl:ENSP000002480711600115GO_REF:0000107EnsemblGO_REF:0000107
Klf2Ratcellular response to hydrogen peroxide  IEP 2316543 RGD 
Klf2Ratcellular response to interleukin-1  IEP 2316543 RGD 
Klf2Ratcellular response to laminar fluid shear stress involved_inISOKLF2 (Homo sapiens)1624291 PMID:23043106RGDPMID:23043106
Klf2Ratcellular response to laminar fluid shear stress involved_inIEAUniProtKB:Q9Y5W3 and ensembl:ENSP000002480711600115GO_REF:0000107EnsemblGO_REF:0000107
Klf2Ratcellular response to tumor necrosis factor  IEP 2316543 RGD 
Klf2Ratcellular stress response to acid chemical involved_inISOKLF2 (Homo sapiens)1624291 PMID:26299712RGDPMID:26299712
Klf2Ratcellular stress response to acid chemical involved_inIEAUniProtKB:Q9Y5W3 and ensembl:ENSP000002480711600115GO_REF:0000107EnsemblGO_REF:0000107
Klf2Ratepigenetic regulation of gene expression acts_upstream_of_or_withinISOKlf2 (Mus musculus)1624291MGI:3588194 PMID:22482507RGDPMID:22482507
Klf2Ratepigenetic regulation of gene expression acts_upstream_of_or_withinIEAUniProtKB:Q60843 and ensembl:ENSMUSP000000648231600115GO_REF:0000107EnsemblGO_REF:0000107
Klf2Raterythrocyte homeostasis acts_upstream_of_or_withinIEAUniProtKB:Q60843 and ensembl:ENSMUSP000000648231600115GO_REF:0000107EnsemblGO_REF:0000107
Klf2Raterythrocyte homeostasis acts_upstream_of_or_withinISOKlf2 (Mus musculus)1624291MGI:3047647 PMID:15947087RGDPMID:15947087
Klf2Raterythrocyte maturation acts_upstream_of_or_withinISOKlf2 (Mus musculus)1624291MGI:3047647 PMID:15947087RGDPMID:15947087
Klf2Raterythrocyte maturation acts_upstream_of_or_withinIEAUniProtKB:Q60843 and ensembl:ENSMUSP000000648231600115GO_REF:0000107EnsemblGO_REF:0000107
Klf2Ratin utero embryonic development acts_upstream_of_or_withinISOKlf2 (Mus musculus)1624291MGI:3047647 PMID:15947087 and PMID:9859212RGDPMID:15947087 and PMID:9859212
Klf2Ratin utero embryonic development acts_upstream_of_or_withinIEAUniProtKB:Q60843 and ensembl:ENSMUSP000000648231600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component

  
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Original Reference(s)
Klf2Ratchromatin located_inIEAUniProtKB:Q9Y5W3 and ensembl:ENSP000002480711600115GO_REF:0000107EnsemblGO_REF:0000107
Klf2Ratchromatin located_inISOKLF2 (Homo sapiens)1624291 PMID:22327366RGDPMID:22327366
Klf2Ratnucleus located_inISOKlf2 (Mus musculus)1624291 PMID:22001906RGDPMID:22001906
Klf2Ratnucleus located_inIEAUniProtKB:Q60843 and ensembl:ENSMUSP000000648231600115GO_REF:0000107EnsemblGO_REF:0000107
Klf2Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
Klf2Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043

Molecular Function
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Original Reference(s)
Klf2RatDNA binding enablesISOKLF2 (Homo sapiens)1624291 PMID:22327366RGDPMID:22327366
Klf2RatDNA binding enablesIEAUniProtKB-KW:KW-02381600115GO_REF:0000043UniProtGO_REF:0000043
Klf2RatDNA binding enablesIEAUniProtKB:Q9Y5W3 and ensembl:ENSP000002480711600115GO_REF:0000107EnsemblGO_REF:0000107
Klf2RatDNA-binding transcription factor activity enablesISOKLF2 (Homo sapiens)1624291 PMID:21063504RGDPMID:21063504
Klf2RatDNA-binding transcription factor activity enablesIEAUniProtKB:Q60843 and ensembl:ENSMUSP000000648231600115GO_REF:0000107EnsemblGO_REF:0000107
Klf2RatDNA-binding transcription factor activity enablesIEAUniProtKB:Q9Y5W3 and ensembl:ENSP000002480711600115GO_REF:0000107EnsemblGO_REF:0000107
Klf2RatDNA-binding transcription factor activity enablesISSUniProtKB:Q9Y5W31600115GO_REF:0000024UniProtGO_REF:0000024
Klf2RatDNA-binding transcription factor activity enablesISOKlf2 (Mus musculus)1624291 PMID:7565748RGDPMID:7565748
Klf2RatDNA-binding transcription factor activity, RNA polymerase II-specific enablesISOKLF2 (Homo sapiens)1624291 PMID:22327366RGDPMID:22327366
Klf2RatDNA-binding transcription factor activity, RNA polymerase II-specific enablesIEAUniProtKB:Q9Y5W3 and ensembl:ENSP000002480711600115GO_REF:0000107EnsemblGO_REF:0000107
Klf2RatDNA-binding transcription factor activity, RNA polymerase II-specific enablesIBAFB:FBgn0000233 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Klf2Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Klf2Ratprotein binding enablesISOKLF2 (Homo sapiens)1624291UniProtKB:Q92831 more ...RGDPMID:16617118 and PMID:21382345
Klf2Ratprotein binding enablesISOKlf2 (Mus musculus)1624291UniProtKB:Q8BZZ3 and PMID:11375995RGDPMID:11375995
Klf2RatRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesIBAMGI:1277166 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Klf2Ratsequence-specific double-stranded DNA binding enablesISOKLF2 (Homo sapiens)1624291 PMID:28473536RGDPMID:28473536
Klf2Ratsequence-specific double-stranded DNA binding enablesIEAUniProtKB:Q9Y5W3 and ensembl:ENSP000002480711600115GO_REF:0000107EnsemblGO_REF:0000107
Klf2Ratzinc ion binding enablesIEAUniProtKB-KW:KW-08631600115GO_REF:0000043UniProtGO_REF:0000043
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#
Reference Title
Reference Citation
1. Endothelin-1 regulation of immediate early gene expression in cardiac myocytes: negative feedback regulation of interleukin 6 by Atf3 and Klf2. Clerk A, etal., Adv Enzyme Regul. 2009;49(1):30-42. Epub 2008 Dec 31.
2. Differential regulation of Kruppel-like factor family transcription factor expression in neonatal rat cardiac myocytes: effects of endothelin-1, oxidative stress and cytokines. Cullingford TE, etal., Biochim Biophys Acta. 2008 Jun;1783(6):1229-36. Epub 2008 Mar 25.
3. T-cell survival regulator LKLF is not involved in inappropriate apoptosis of diabetes-prone BBDP rat T cells. Diessenbacher P, etal., Ann N Y Acad Sci 2003 Dec;1010:548-51.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Shear stress regulation of Kruppel-like factor 2 expression is flow pattern-specific. Wang N, etal., Biochem Biophys Res Commun. 2006 Mar 24;341(4):1244-51. Epub 2006 Jan 30.
9. Lung Kruppel-like factor (LKLF) is a transcriptional activator of the cytosolic phospholipase A2 alpha promoter. Wick MJ, etal., Biochem J. 2005 Apr 1;387(Pt 1):239-46.
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PMID:7565748   PMID:9859212   PMID:15947087   PMID:20551324   PMID:21053160   PMID:21063504   PMID:21768538   PMID:22001906   PMID:22327366   PMID:22482507   PMID:22737924   PMID:22989565  
PMID:23002242   PMID:23043106   PMID:25500203   PMID:26299712   PMID:26416422   PMID:26813466   PMID:27855271   PMID:28167758   PMID:29079188   PMID:30628700   PMID:34147481   PMID:36343159  
PMID:36638871  



Klf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81617,555,136 - 17,557,768 (-)NCBIGRCr8
mRatBN7.21617,521,107 - 17,523,739 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1617,514,552 - 17,523,944 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1617,587,223 - 17,589,173 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01618,720,530 - 18,722,483 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01617,640,143 - 17,642,093 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,223,087 - 19,225,037 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,223,087 - 19,225,037 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,084,196 - 19,086,146 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41617,941,780 - 17,943,730 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11617,941,777 - 17,943,728 (-)NCBI
Celera1617,739,313 - 17,741,263 (-)NCBICelera
Cytogenetic Map16p14NCBI
KLF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381916,324,826 - 16,328,685 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1916,324,826 - 16,328,685 (+)EnsemblGRCh38hg38GRCh38
GRCh371916,435,637 - 16,439,496 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361916,296,651 - 16,299,345 (+)NCBINCBI36Build 36hg18NCBI36
Build 341916,296,650 - 16,299,337NCBI
Celera1916,337,566 - 16,340,260 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1916,006,724 - 16,007,405 (+)NCBIHuRef
CHM1_11916,435,181 - 16,437,875 (+)NCBICHM1_1
T2T-CHM13v2.01916,459,702 - 16,463,562 (+)NCBIT2T-CHM13v2.0
Klf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39873,072,906 - 73,075,498 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl873,072,877 - 73,075,500 (+)EnsemblGRCm39 Ensembl
GRCm38872,319,062 - 72,321,654 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,319,033 - 72,321,656 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,842,961 - 74,845,553 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36875,248,022 - 75,250,338 (+)NCBIMGSCv36mm8
Celera876,656,424 - 76,659,017 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.99NCBI
KLF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22021,194,451 - 21,197,283 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11920,200,667 - 20,203,238 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01915,812,506 - 15,815,244 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11916,792,497 - 16,794,143 (+)NCBIpanpan1.1PanPan1.1panPan2
KLF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12046,182,565 - 46,183,704 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2046,096,492 - 46,098,925 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02046,670,279 - 46,672,712 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2046,670,789 - 46,672,713 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12045,904,933 - 45,907,365 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02046,316,205 - 46,318,628 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02046,591,720 - 46,594,153 (-)NCBIUU_Cfam_GSD_1.0
KLF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl261,270,199 - 61,273,138 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1261,270,733 - 61,273,037 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2260,903,997 - 60,904,625 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KLF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1614,832,013 - 14,834,744 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl614,832,029 - 14,837,462 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660744,637,274 - 4,640,383 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Klf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249081,021,865 - 1,023,279 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Klf2
4 total Variants

Predicted Target Of
Summary Value
Count of predictions:87
Count of miRNA genes:75
Interacting mature miRNAs:83
Transcripts:ENSRNOT00000019052
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 28 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161572643321034895Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat

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alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000019052   ⟹   ENSRNOP00000019052
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1619,223,087 - 19,225,037 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112398   ⟹   ENSRNOP00000083422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1617,514,552 - 17,523,944 (-)Ensembl
RefSeq Acc Id: NM_001007684   ⟹   NP_001007685
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81617,555,136 - 17,557,768 (-)NCBI
mRatBN7.21617,521,107 - 17,523,739 (-)NCBI
Rnor_6.01619,223,087 - 19,225,037 (-)NCBI
Rnor_5.01619,084,196 - 19,086,146 (-)NCBI
RGSC_v3.41617,941,780 - 17,943,730 (-)RGD
Celera1617,739,313 - 17,741,263 (-)RGD
Sequence:
Protein RefSeqs NP_001007685 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG02141 (Get FASTA)   NCBI Sequence Viewer  
  EDL90840 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000083422.1
  ENSRNOP00000104221
GenBank Protein Q9ET58 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001007685   ⟸   NM_001007684
- UniProtKB: Q9ET58 (UniProtKB/Swiss-Prot),   A6K9P7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000019052   ⟸   ENSRNOT00000019052
Ensembl Acc Id: ENSRNOP00000083422   ⟸   ENSRNOT00000112398
C2H2-type

Name Modeler Protein Id AA Range Protein Structure
AF-Q9ET58-F1-model_v2 AlphaFold Q9ET58 1-351 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13699986
Promoter ID:EPDNEW_R10508
Type:single initiation site
Name:Klf2_1
Description:Kruppel-like factor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01619,225,053 - 19,225,113EPDNEW


1 to 25 of 25 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-11881 BioCyc
Ensembl Genes ENSRNOG00000014205 Ensembl
  ENSRNOG00000067705 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000075360 ENTREZGENE
Ensembl Transcript ENSRNOT00000112398.1 UniProtKB/Swiss-Prot
  ENSRNOT00000150356 ENTREZGENE
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot
InterPro Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report rno:306330 UniProtKB/Swiss-Prot
NCBI Gene 306330 ENTREZGENE
PANTHER KRUEPPEL-LIKE FACTOR 2 UniProtKB/Swiss-Prot
  KRUEPPEL-LIKE TRANSCRIPTION FACTOR UniProtKB/Swiss-Prot
Pfam zf-C2H2 UniProtKB/Swiss-Prot
PharmGKB KLF2 RGD
PhenoGen Klf2 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000014205 RatGTEx
  ENSRNOG00000067705 RatGTEx
  ENSRNOG00000075360 RatGTEx
SMART ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot
UniProt A6K9P7 ENTREZGENE, UniProtKB/TrEMBL
  KLF2_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 25 of 25 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-10-03 Klf2  KLF transcription factor 2  Klf2  Kruppel-like factor 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-11-11 Klf2  Kruppel-like factor 2  Klf2  Kruppel-like factor 2 (lung)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Klf2  Kruppel-like factor 2 (lung)   Klf2_predicted  Kruppel-like factor 2 (lung) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Klf2_predicted  Kruppel-like factor 2 (lung) (predicted)  Klf2  Kruppel-like factor  Name updated 1299863 APPROVED
2005-12-06 Klf2  Kruppel-like factor      Symbol and Name updated 1559027 APPROVED
2005-07-29 Klf2  Kruppel-like factor      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_disease is not mutated in the autoimmune IDDM-prone BB rat 1359759
gene_homology inactivation of the mouse homolog causes development of autoimmune insulin dependent diabetes mellitus 1359759