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Gene: Pdlim2 (PDZ and LIM domain 2) Rattus norvegicus

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Symbol:

Pdlim2

Name:

PDZ and LIM domain 2

RGD ID:

1359203

Description:

Enables filamin binding activity; muscle alpha-actinin binding activity; and myosin heavy chain binding activity. Predicted to be involved in several processes, including actin cytoskeleton organization; heart development; and protein catabolic process. Located in cortical actin cytoskeleton and stress fiber. Orthologous to human PDLIM2 (PDZ and LIM domain 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

alpha-actinins and filamin-interacting protein; MGC94060; PDZ and LIM domain protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PDLIM2 (PDZ and LIM domain 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Pdlim2 (PDZ and LIM domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pdlim2 (PDZ and LIM domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PDLIM2 (PDZ and LIM domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PDLIM2 (PDZ and LIM domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pdlim2 (PDZ and LIM domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PDLIM2 (PDZ and LIM domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PDLIM2 (PDZ and LIM domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pdlim2 (PDZ and LIM domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Pdlim2 (PDZ and LIM domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PDLIM2 (PDZ and LIM domain 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pdlim2 (PDZ and LIM domain 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pdlim2 (PDZ and LIM domain 2 (mystique))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG42319	Alliance	DIOPT (OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	Zasp66	Alliance	DIOPT (InParanoid\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	pdlim2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	51,647,195 - 51,659,904 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	51,647,197 - 51,658,958 (-)	Ensembl				GRCr8
mRatBN7.2	15	45,235,421 - 45,250,187 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	45,237,477 - 45,249,242 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	49,355,325 - 49,367,092 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	50,466,819 - 50,478,584 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	47,326,135 - 47,337,906 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	51,843,562 - 51,856,785 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	51,843,564 - 51,855,325 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	55,569,716 - 55,582,403 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	50,564,108 - 50,575,871 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	44,916,943 - 44,928,696 (-)	NCBI		Celera
RGSC_v3.1	15	50,579,889 - 50,591,651 (-)	NCBI
Cytogenetic Map	15	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2,4,6-tribromophenol (ISO)

2,4,6-trinitrotoluene (EXP)

2,4-dinitrotoluene (EXP)

3,3',4,4',5-pentachlorobiphenyl (ISO)

4,4'-sulfonyldiphenol (ISO)

4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

alpha-Zearalanol (EXP)

amiodarone (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

Benzo[k]fluoranthene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

caffeine (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

cobalt dichloride (EXP)

corn oil (EXP)

coumarin (ISO)

cyclosporin A (ISO)

daidzein (ISO)

deoxynivalenol (ISO)

dibutyl phthalate (EXP)

diethyl maleate (EXP)

endosulfan (EXP)

ethanol (ISO)

fenamidone (ISO)

fenvalerate (EXP)

furan (EXP)

genistein (ISO)

gentamycin (EXP)

glycidol (EXP)

glycitein (ISO)

GSK-J4 (ISO)

ivermectin (ISO)

kojic acid (ISO)

lead diacetate (ISO)

lipopolysaccharide (ISO)

methapyrilene (ISO)

methimazole (EXP)

methotrexate (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

morphine (ISO)

nicotine (ISO)

nitrates (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorooctanoic acid (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

tamoxifen (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin cytoskeleton organization (IBA)

heart development (IBA)

muscle structure development (IBA)

protein catabolic process (ISO)

Cellular Component

actin cytoskeleton (ISO)

adherens junction (IBA)

cortical actin cytoskeleton (IDA)

cytoplasm (IEA)

cytoskeleton (IEA)

filamentous actin (IBA)

focal adhesion (ISO)

stress fiber (IBA,IDA)

Z disc (IBA)

Molecular Function

actin binding (IBA)

alpha-actinin binding (IPI)

filamin binding (IPI)

metal ion binding (IEA)

muscle alpha-actinin binding (IBA,IPI)

myosin heavy chain binding (IPI)

protein binding (IPI,ISO)

ubiquitin protein ligase binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
6.	Pdlim2, a novel PDZ-LIM domain protein, interacts with alpha-actinins and filamin A.	Torrado M, etal., Invest Ophthalmol Vis Sci 2004 Nov;45(11):3955-63.

Additional References at PubMed

PMID:15489334	PMID:23376485

Genomics

Comparative Map Data

Pdlim2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	51,647,195 - 51,659,904 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	51,647,197 - 51,658,958 (-)	Ensembl				GRCr8
mRatBN7.2	15	45,235,421 - 45,250,187 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	45,237,477 - 45,249,242 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	49,355,325 - 49,367,092 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	50,466,819 - 50,478,584 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	47,326,135 - 47,337,906 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	51,843,562 - 51,856,785 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	51,843,564 - 51,855,325 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	55,569,716 - 55,582,403 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	50,564,108 - 50,575,871 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	44,916,943 - 44,928,696 (-)	NCBI		Celera
RGSC_v3.1	15	50,579,889 - 50,591,651 (-)	NCBI
Cytogenetic Map	15	p11	NCBI

PDLIM2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	22,578,741 - 22,598,026 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	22,578,058 - 22,598,025 (+)	Ensembl			hg38	GRCh38
GRCh37	8	22,436,254 - 22,455,539 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	22,492,588 - 22,511,483 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	8	22,493,928 - 22,507,753	NCBI
Celera	8	21,398,253 - 21,417,218 (+)	NCBI		Celera
Cytogenetic Map	8	p21.3	NCBI
HuRef	8	20,978,620 - 20,998,302 (+)	NCBI		HuRef
CHM1_1	8	22,638,615 - 22,657,872 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	22,852,592 - 22,871,886 (+)	NCBI		T2T-CHM13v2.0

Pdlim2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	70,401,667 - 70,415,140 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	70,401,667 - 70,415,130 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	70,162,621 - 70,177,672 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	70,164,218 - 70,177,681 (-)	Ensembl			mm10	GRCm38
MGSCv37	14	70,564,025 - 70,577,479 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	68,899,298 - 68,912,752 (-)	NCBI		MGSCv36	mm8
Celera	14	67,704,941 - 67,718,471 (-)	NCBI		Celera
Cytogenetic Map	14	D2	NCBI
cM Map	14	36.26	NCBI

Pdlim2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	46,008,043 - 46,023,169 (+)	Ensembl
ChiLan1.0	NW_004955403	46,006,255 - 46,019,865 (+)	NCBI	ChiLan1.0	ChiLan1.0

PDLIM2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	41,085,786 - 41,101,352 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	16,811,012 - 16,826,587 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	21,828,923 - 21,844,483 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	18,767,109 - 18,783,307 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	18,767,142 - 18,783,658 (+)	Ensembl			panPan2	panpan1.1

PDLIM2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	34,684,954 - 34,699,144 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	34,684,964 - 34,699,166 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	35,274,652 - 35,288,822 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	34,894,441 - 34,907,844 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	34,894,452 - 34,907,788 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	34,840,878 - 34,855,071 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	34,694,952 - 34,709,153 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	34,850,492 - 34,864,707 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pdlim2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	12,238,957 - 12,251,623 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936555	6,318,762 - 6,331,575 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936555	6,318,813 - 6,331,556 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PDLIM2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	6,834,779 - 6,848,526 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	6,834,116 - 6,848,536 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	7,314,401 - 7,328,566 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PDLIM2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	20,658,642 - 20,674,915 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	20,659,361 - 20,674,900 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666052	21,552,160 - 21,568,193 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pdlim2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624758	18,085,818 - 18,098,621 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pdlim2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	12	54,171,581 - 54,190,207 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pdlim2
87 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	52
Count of miRNA genes:	47
Interacting mature miRNAs:	50
Transcripts:	ENSRNOT00000011663
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300144	Rf23	Renal function QTL 23	3.61		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	15	44806773	104695021	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2315759	53331089	Rat
152025253	Hrtrt24	Heart rate QTL 24	3.82		heart pumping trait (VT:2000009)		15	31855803	92671517	Rat
1582227	Gluco30	Glucose level QTL 30	3.6	0.0003	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	15	43677244	88677244	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	28527732	73527732	Rat
1582228	Epfw3	Epididymal fat weight QTL 3	4.1	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	43677244	88677244	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	25285835	104695021	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	22336351	52597086	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	25285835	104695021	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	19155762	87086765	Rat
1598828	Glom14	Glomerulus QTL 14	2.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	15	40463152	85463152	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	14926594	71614418	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	22336351	67336351	Rat
1582242	Gluco28	Glucose level QTL 28	3.3	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	43677244	88677244	Rat
2306968	Anxrr23	Anxiety related response QTL 23	4.83		reflex trait (VT:0001961)	amplitude of the acoustic startle response (CMO:0001520)	15	44806773	52597086	Rat
1582244	Bw79	Body weight QTL 79	4	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	43677244	88677244	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	25285835	104695021	Rat
7411725	Strs7	Sensitivity to stroke QTL 7	3.8		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	15	44465447	56583797	Rat
1582214	Stl21	Serum triglyceride level QTL 21	3.1	0.022	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	15	43677244	88677244	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001007622	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY531526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC098785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000011663 ⟹ ENSRNOP00000011663

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	51,647,197 - 51,658,958 (-)	Ensembl
mRatBN7.2 Ensembl	15	45,237,477 - 45,249,242 (-)	Ensembl
Rnor_6.0 Ensembl	15	51,843,564 - 51,855,325 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000135672 ⟹ ENSRNOP00000101268

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	51,647,197 - 51,658,193 (-)	Ensembl

RefSeq Acc Id:

NM_001007622 ⟹ NP_001007623

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	51,647,195 - 51,658,958 (-)	NCBI
mRatBN7.2	15	45,237,475 - 45,249,242 (-)	NCBI
Rnor_6.0	15	51,843,562 - 51,855,325 (-)	NCBI
Rnor_5.0	15	55,569,716 - 55,582,403 (-)	NCBI
RGSC_v3.4	15	50,564,108 - 50,575,871 (-)	RGD
Celera	15	44,916,943 - 44,928,696 (-)	RGD

Sequence:

show sequence

CAGACGGCTGCGGTGGAACGGCGGTGGCTCCTCGTCCTTACTCCCTCTGTTCTTCCCTCCCTCT
TTCCCTTTCCTGGCGGGCCTGGCCGCCCAGCCCAACAGGCAAGCGGCAGCCAGGCATGGCGTTG
ACTGTGAATGTGGTGGGACCAGCACCTTGGGGCTTCCGCATTAGCGGAGGAAGGGATTTCCATA
CACCCATCATCGTGACGAAGGTCACAGAGAGGGGCAAGGCGGAGGCAGCTGATCTCCGGCCTGG
CGACATCATTGTGGCCATCAATGGAGAGAGTGCCGAGAGCATGCTACATGCGGAGGCCCAAAGC
AAGATCCGACAGAGTGCCTCACCCCTAAGACTGCAGCTGGACCGGTCCCAAACTGCCTCTCCTG
GGCAGATCAATGGGGAGGGCTCCTTGGACATGCTGGCAACTAGATTCCAGGGCTCCCTGAGGAC
ACACCATAACAGCCAGTCTTCCCAGAGATCTGCCTGCTTCAGCCCAGCCTCTCTCAGTCCCAGG
CCAGACAGCCCTTTCTCCACTCCACCCCCTACCAGCCCAATTGCCCTTTCTGGAGAGAATGTGA
TTGGCTGTAGTTTCCAGAGTCTGACACACTCTCCAGGTCTTGCTGCTACTCACCACTTGACCTA
CCCTGGCCAGCCCACCAGCCAACAGGCCGGCCACAGCAGCCCAAGCGACTCCACAGTGAGGGTG
CTGCTTCATTCCCCAGGACGACCCTCCAGCCCCAGGTTAAGCAGTTTGGACCTGGAGGAGGACT
CAGAGGTGTTCAAGATGCTGCAGGAGAACCGCCAGGGACGGGCTGCCCCAAGGCAGTCCAGCTC
TTTTCGGCTCTTACAGGAAGCCTTGGAGGCTGAGGAAAGAGGCGGCACACCTGCCTTTGTGCCC
AGCTCGCTGAGTCCCAAGGCTTCCTTGCCCACCTCCAGGGCCTTGGCCACGCCACCCAAACTCC
ACACCTGTGAGAAGTGCAGCGTCAACATCTCGAACCAGGCAGTCCGCATCCAGGAGGGGAGGTA
CCGACACCCTGGCTGCTACACCTGTGCAGACTGCGGGCTGAACCTGAAGATGCGGGGTCACTTC
TGGGTGGGAAACGAGTTGTACTGTGAGAAGCACGCCCGCCAGCGCTACTCAATGCCTGGAACTC
TCAGCTCTCAAGCCTGAGCCAAAAGGTGTCTGCACTCTCAGACTCTGCAGACATGACCATACTG
AGCAAGCAGGGAAGGGGTGATAATAGCAGTTGATAGAACTAAGGCTGGGAGTCCCCTTTGTCCT
TGCTGGGTGAGGCCAAGGGTTGGGACTAGTGGCAGATTGCTAGTGCTGAGAAAATTCCACTCTC
TCTGGCCTTTCTCCTGCAGGCCAGGTTCTATACTACAGTCTGAAGTGGCCGCCATATTTGACAA
GTTTGCATATAGGGTTGGGCACAGGTAGAAGTATCTAGAAGGGAAAGGTGGGCCTGAGGTTAAT
ATATTCATGGTATGAAGTTTCTAACATATGAACTATATATACATGTGGCTAAAATTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006252256 ⟹ XP_006252318

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	51,647,195 - 51,657,790 (-)	NCBI
mRatBN7.2	15	45,237,172 - 45,248,076 (-)	NCBI
Rnor_6.0	15	51,843,562 - 51,854,127 (-)	NCBI
Rnor_5.0	15	55,569,716 - 55,582,403 (-)	NCBI

Sequence:

show sequence

GTGTGGAAGTCTGGCCGCTTGTCAGTGGGACTGCTGCCTGTCTTAGGGGATCTACTAATCTGAA
GACCCTAGAAGGGGGAACTCAAAGTCTCAGGACTTCCAGGGTGGAGGCATGGCGTTGACTGTGA
ATGTGGTGGGACCAGCACCTTGGGGCTTCCGCATTAGCGGAGGAAGGGATTTCCATACACCCAT
CATCGTGACGAAGGTCACAGAGAGGGGCAAGGCGGAGGCAGCTGATCTCCGGCCTGGCGACATC
ATTGTGGCCATCAATGGAGAGAGTGCCGAGAGCATGCTACATGCGGAGGCCCAAAGCAAGATCC
GACAGAGTGCCTCACCCCTAAGACTGCAGCTGGACCGGTCCCAAACTGCCTCTCCTGGGCAGAT
CAATGGGGAGGGCTCCTTGGACATGCTGGCAACTAGATTCCAGGGCTCCCTGAGGACACACCAT
AACAGCCAGTCTTCCCAGAGATCTGCCTGCTTCAGCCCAGCCTCTCTCAGTCCCAGGCCAGACA
GCCCTTTCTCCACTCCACCCCCTACCAGCCCAATTGCCCTTTCTGGAGAGAATGTGATTGGCTG
TAGTTTCCAGAGTCTGACACACTCTCCAGGTCTTGCTGCTACTCACCACTTGACCTACCCTGGC
CAGCCCACCAGCCAACAGGCCGGCCACAGCAGCCCAAGCGACTCCACAGTGAGGGTGCTGCTTC
ATTCCCCAGGACGACCCTCCAGCCCCAGGTTAAGCAGTTTGGACCTGGAGGAGGACTCAGAGGT
GTTCAAGATGCTGCAGGAGAACCGCCAGGGACGGGCTGCCCCAAGGCAGTCCAGCTCTTTTCGG
CTCTTACAGGAAGCCTTGGAGGCTGAGGAAAGAGGCGGCACACCTGCCTTTGTGCCCAGCTCGC
TGAGTCCCAAGGCTTCCTTGCCCACCTCCAGGGCCTTGGCCACGCCACCCAAACTCCACACCTG
TGAGAAGTGCAGCGTCAACATCTCGAACCAGGCAGTCCGCATCCAGGAGGGGAGGTACCGACAC
CCTGGCTGCTACACCTGTGCAGACTGCGGGCTGAACCTGAAGATGCGGGGTCACTTCTGGGTGG
GAAACGAGTTGTACTGTGAGAAGCACGCCCGCCAGCGCTACTCAATGCCTGGAACTCTCAGCTC
TCAAGCCTGAGCCAAAAGGTGTCTGCACTCTCAGACTCTGCAGACATGACCATACTGAGCAAGC
AGGGAAGGGGTGATAATAGCAGTTGATAGAACTAAGGCTGGGAGTCCCCTTTGTCCTTGCTGGG
TGAGGCCAAGGGTTGGGACTAGTGGCAGATTGCTAGTGCTGAGAAAATTCCACTCTCTCTGGCC
TTTCTCCTGCAGGCCAGGTTCTATACTACAGTCTGAAGTGGCCGCCATATTTGACAAGTTTGCA
TATAGGGTTGGGCACAGGTAGAAGTATCTAGAAGGGAAAGGTGGGCCTGAGGTTAATATATTCA
TGGTATGAAGTTTCTAACATATGAACTATATATACATGTGGCTAAAATTAA

hide sequence

RefSeq Acc Id:

XM_006252257 ⟹ XP_006252319

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	51,647,195 - 51,659,904 (-)	NCBI
mRatBN7.2	15	45,237,172 - 45,250,187 (-)	NCBI
Rnor_6.0	15	51,843,562 - 51,856,785 (-)	NCBI
Rnor_5.0	15	55,569,716 - 55,582,403 (-)	NCBI

Sequence:

show sequence

CCCACACACACACATACCGACAGGTCAGAGGGAAGCAATTCCCCAGTGAGGGTCCCTCTTTCCA
CATAACCCTAGTTTGTATCAAGTTGACAAAAAGTAAACAGAAACGGCACACTACGGAACACCAT
ACAGTTAAAGGCAGCTGTGGCACTTGAGAATCAGACAGTGTGAACCTAAGGCAGAGGCTGCCCA
ACCAGAGGTCTGCTCAAGAGATTTTCAGGGAACTGAGGTAGAACTTAAAGGGAGGTCTGGTCTG
GGGCCCTGTGTTCAATATCCAGCACCAAAACAAACAAAAGGCTTCCAGACTAGCTGTGGAGGGA
GAACAGGTGCAGCAGACACGGGGCCCCTCCAGGAGGCCCCTGGAATTAGTCTGTGGTAGAGCCA
TTTATCTGCCCAAGGGGAGGCTGTGGGAGGTGGGGCTAGGGAGGTGACCCTGAGCCACACGGAA
AGCGCTTTGTAGGTGAGGAGGCTGGTAAGGGTGGTGAGGACAATCCTCTTGGGGAACTCTGAGA
GAATGACTCACACCCAAGGCAGGCAGCTTACAGCTGGGTCCACAGGTGTGCTCTACGGTGTGCC
AAGTTGTAAGAGCAACTGAAGAGGCAGGAGGCAGCTGCGTGGGCCCGGAACTCCCCAGGGCAAG
AGTTGCCAGGCATGGCGTTGACTGTGAATGTGGTGGGACCAGCACCTTGGGGCTTCCGCATTAG
CGGAGGAAGGGATTTCCATACACCCATCATCGTGACGAAGGTCACAGAGAGGGGCAAGGCGGAG
GCAGCTGATCTCCGGCCTGGCGACATCATTGTGGCCATCAATGGAGAGAGTGCCGAGAGCATGC
TACATGCGGAGGCCCAAAGCAAGATCCGACAGAGTGCCTCACCCCTAAGACTGCAGCTGGACCG
GTCCCAAACTGCCTCTCCTGGGCAGATCAATGGGGAGGGCTCCTTGGACATGCTGGCAACTAGA
TTCCAGGGCTCCCTGAGGACACACCATAACAGCCAGTCTTCCCAGAGATCTGCCTGCTTCAGCC
CAGCCTCTCTCAGTCCCAGGCCAGACAGCCCTTTCTCCACTCCACCCCCTACCAGCCCAATTGC
CCTTTCTGGAGAGAATGTGATTGGCTGTAGTTTCCAGAGTCTGACACACTCTCCAGGTCTTGCT
GCTACTCACCACTTGACCTACCCTGGCCAGCCCACCAGCCAACAGGCCGGCCACAGCAGCCCAA
GCGACTCCACAGTGAGGGTGCTGCTTCATTCCCCAGGACGACCCTCCAGCCCCAGGTTAAGCAG
TTTGGACCTGGAGGAGGACTCAGAGGTGTTCAAGATGCTGCAGGAGAACCGCCAGGGACGGGCT
GCCCCAAGGCAGTCCAGCTCTTTTCGGCTCTTACAGGAAGCCTTGGAGGCTGAGGAAAGAGGCG
GCACACCTGCCTTTGTGCCCAGCTCGCTGAGTCCCAAGGCTTCCTTGCCCACCTCCAGGGCCTT
GGCCACGCCACCCAAACTCCACACCTGTGAGAAGTGCAGCGTCAACATCTCGAACCAGGCAGTC
CGCATCCAGGAGGGGAGGTACCGACACCCTGGCTGCTACACCTGTGCAGACTGCGGGCTGAACC
TGAAGATGCGGGGTCACTTCTGGGTGGGAAACGAGTTGTACTGTGAGAAGCACGCCCGCCAGCG
CTACTCAATGCCTGGAACTCTCAGCTCTCAAGCCTGAGCCAAAAGGTGTCTGCACTCTCAGACT
CTGCAGACATGACCATACTGAGCAAGCAGGGAAGGGGTGATAATAGCAGTTGATAGAACTAAGG
CTGGGAGTCCCCTTTGTCCTTGCTGGGTGAGGCCAAGGGTTGGGACTAGTGGCAGATTGCTAGT
GCTGAGAAAATTCCACTCTCTCTGGCCTTTCTCCTGCAGGCCAGGTTCTATACTACAGTCTGAA
GTGGCCGCCATATTTGACAAGTTTGCATATAGGGTTGGGCACAGGTAGAAGTATCTAGAAGGGA
AAGGTGGGCCTGAGGTTAATATATTCATGGTATGAAGTTTCTAACATATGAACTATATATACAT
GTGGCTAAAATTAA

hide sequence

RefSeq Acc Id:

XM_039093158 ⟹ XP_038949086

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	51,647,195 - 51,659,207 (-)	NCBI
mRatBN7.2	15	45,235,421 - 45,249,908 (-)	NCBI

RefSeq Acc Id:

XM_063274139 ⟹ XP_063130209

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	51,647,195 - 51,658,108 (-)	NCBI

RefSeq Acc Id:

XM_063274140 ⟹ XP_063130210

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	51,650,630 - 51,657,481 (-)	NCBI

RefSeq Acc Id:

XM_063274141 ⟹ XP_063130211

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	51,650,630 - 51,657,481 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001007623	(Get FASTA)	NCBI Sequence Viewer
	XP_006252318	(Get FASTA)	NCBI Sequence Viewer
	XP_006252319	(Get FASTA)	NCBI Sequence Viewer
	XP_038949086	(Get FASTA)	NCBI Sequence Viewer
	XP_063130209	(Get FASTA)	NCBI Sequence Viewer
	XP_063130210	(Get FASTA)	NCBI Sequence Viewer
	XP_063130211	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79091	(Get FASTA)	NCBI Sequence Viewer
	AAS99334	(Get FASTA)	NCBI Sequence Viewer
	EDM02204	(Get FASTA)	NCBI Sequence Viewer
	EDM02205	(Get FASTA)	NCBI Sequence Viewer
	EDM02206	(Get FASTA)	NCBI Sequence Viewer
	EDM02207	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000011663
	ENSRNOP00000011663.3
	ENSRNOP00000101268
GenBank Protein	Q6AYD6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001007623 ⟸ NM_001007622

- UniProtKB:

Q6AYD6 (UniProtKB/Swiss-Prot), A6HTJ3 (UniProtKB/TrEMBL), A6HTJ1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MALTVNVVGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGESAESMLHAE
AQSKIRQSASPLRLQLDRSQTASPGQINGEGSLDMLATRFQGSLRTHHNSQSSQRSACFSPASL
SPRPDSPFSTPPPTSPIALSGENVIGCSFQSLTHSPGLAATHHLTYPGQPTSQQAGHSSPSDST
VRVLLHSPGRPSSPRLSSLDLEEDSEVFKMLQENRQGRAAPRQSSSFRLLQEALEAEERGGTPA
FVPSSLSPKASLPTSRALATPPKLHTCEKCSVNISNQAVRIQEGRYRHPGCYTCADCGLNLKMR
GHFWVGNELYCEKHARQRYSMPGTLSSQA

hide sequence

RefSeq Acc Id:	XP_006252319 ⟸ XM_006252257
- Peptide Label:	isoform X2
- UniProtKB:	Q6AYD6 (UniProtKB/Swiss-Prot), A6HTJ3 (UniProtKB/TrEMBL), A6HTJ1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALTVNVVGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGESAESMLHAE AQSKIRQSASPLRLQLDRSQTASPGQINGEGSLDMLATRFQGSLRTHHNSQSSQRSACFSPASL SPRPDSPFSTPPPTSPIALSGENVIGCSFQSLTHSPGLAATHHLTYPGQPTSQQAGHSSPSDST VRVLLHSPGRPSSPRLSSLDLEEDSEVFKMLQENRQGRAAPRQSSSFRLLQEALEAEERGGTPA FVPSSLSPKASLPTSRALATPPKLHTCEKCSVNISNQAVRIQEGRYRHPGCYTCADCGLNLKMR GHFWVGNELYCEKHARQRYSMPGTLSSQA hide sequence

RefSeq Acc Id:	XP_006252318 ⟸ XM_006252256
- Peptide Label:	isoform X2
- UniProtKB:	Q6AYD6 (UniProtKB/Swiss-Prot), A6HTJ3 (UniProtKB/TrEMBL), A6HTJ1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALTVNVVGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGESAESMLHAE AQSKIRQSASPLRLQLDRSQTASPGQINGEGSLDMLATRFQGSLRTHHNSQSSQRSACFSPASL SPRPDSPFSTPPPTSPIALSGENVIGCSFQSLTHSPGLAATHHLTYPGQPTSQQAGHSSPSDST VRVLLHSPGRPSSPRLSSLDLEEDSEVFKMLQENRQGRAAPRQSSSFRLLQEALEAEERGGTPA FVPSSLSPKASLPTSRALATPPKLHTCEKCSVNISNQAVRIQEGRYRHPGCYTCADCGLNLKMR GHFWVGNELYCEKHARQRYSMPGTLSSQA hide sequence

Ensembl Acc Id:

ENSRNOP00000011663 ⟸ ENSRNOT00000011663

RefSeq Acc Id:	XP_038949086 ⟸ XM_039093158
- Peptide Label:	isoform X3
- UniProtKB:	A6HTJ1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130209 ⟸ XM_063274139
- Peptide Label:	isoform X1
- UniProtKB:	A6HTJ1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130211 ⟸ XM_063274141
- Peptide Label:	isoform X4
- UniProtKB:	A6HTJ4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130210 ⟸ XM_063274140
- Peptide Label:	isoform X4
- UniProtKB:	A6HTJ4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000101268 ⟸ ENSRNOT00000135672

Protein Domains

LIM zinc-binding PDZ

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AYD6-F1-model_v2	AlphaFold	Q6AYD6	1-349	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699804

Promoter ID:

EPDNEW_R10328

Type:

multiple initiation site

Name:

Pdlim2_1

Description:

PDZ and LIM domain 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	51,855,334 - 51,855,394	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359203	AgrOrtholog
BioCyc Gene	G2FUF-13235	BioCyc
Ensembl Genes	ENSRNOG00000008543	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000011663	ENTREZGENE
	ENSRNOT00000011663.5	UniProtKB/Swiss-Prot
	ENSRNOT00000135672	ENTREZGENE
Gene3D-CATH	2.30.42.10	UniProtKB/Swiss-Prot
	Cysteine Rich Protein	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7123600	IMAGE-MGC_LOAD
InterPro	DUF4749	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
	PDZ-LIM_domain	UniProtKB/Swiss-Prot
	PDZ_sf	UniProtKB/Swiss-Prot
	Znf_LIM	UniProtKB/Swiss-Prot
KEGG Report	rno:290354	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94060	IMAGE-MGC_LOAD
NCBI Gene	290354	ENTREZGENE
PANTHER	PDZ AND LIM DOMAIN PROTEIN 2	UniProtKB/Swiss-Prot
	PDZ AND LIM DOMAIN PROTEIN ZASP	UniProtKB/Swiss-Prot
Pfam	DUF4749	UniProtKB/Swiss-Prot
	LIM	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
PhenoGen	Pdlim2	PhenoGen
PROSITE	LIM_DOMAIN_1	UniProtKB/Swiss-Prot
	LIM_DOMAIN_2	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000008543	RatGTEx
SMART	LIM	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/Swiss-Prot
	SSF50156	UniProtKB/Swiss-Prot
UniProt	A0ABK0L8G3_RAT	UniProtKB/TrEMBL
	A6HTJ1	ENTREZGENE, UniProtKB/TrEMBL
	A6HTJ3	ENTREZGENE, UniProtKB/TrEMBL
	A6HTJ4	ENTREZGENE, UniProtKB/TrEMBL
	PDLI2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Pdlim2	PDZ and LIM domain 2			Symbol and Name status set to approved	1299863	APPROVED
2005-07-29	Pdlim2	PDZ and LIM domain 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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