Cdv3 (carnitine deficiency-associated gene expressed in ventricle 3) - Rat Genome Database

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Gene: Cdv3 (carnitine deficiency-associated gene expressed in ventricle 3) Rattus norvegicus
Analyze
Symbol: Cdv3
Name: carnitine deficiency-associated gene expressed in ventricle 3
RGD ID: 1359113
Description: Predicted to be active in cytoplasm. Orthologous to human CDV3 (CDV3 homolog); INTERACTS WITH (+)-schisandrin B; 4,4'-sulfonyldiphenol; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: carnitine deficiency-associated gene expressed in ventricle 3 homolog; carnitine deficiency-associated gene expressed in ventricle 3 homolog (mouse); CDV3 homolog; LOC315970; protein CDV3 homolog; similar to CDV-3B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,812,898 - 112,826,073 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8112,813,952 - 112,826,056 (-)EnsemblGRCr8
mRatBN7.28103,934,006 - 103,947,173 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8103,933,996 - 103,947,192 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8109,596,512 - 109,606,865 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,795,676 - 107,806,029 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08105,638,354 - 105,648,707 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,837,232 - 111,850,393 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,839,091 - 111,850,393 (-)Ensemblrn6Rnor6.0
Rnor_5.08111,229,075 - 111,242,236 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48108,365,896 - 108,376,263 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8103,312,918 - 103,323,287 (-)NCBICelera
RGSC_v3.18108,385,351 - 108,395,718 (-)NCBI
Cytogenetic Map8q32NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dichloroethane  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
Brodifacoum  (EXP)
caffeine  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethyl methanesulfonate  (ISO)
fenthion  (ISO)
flutamide  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
fumonisin B1  (ISO)
indoles  (EXP)
indometacin  (ISO)
isoprenaline  (ISO)
ivermectin  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
nickel dichloride  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
parathion  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phytoestrogen  (ISO)
pirinixic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:12606058  


Genomics

Comparative Map Data
Cdv3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,812,898 - 112,826,073 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8112,813,952 - 112,826,056 (-)EnsemblGRCr8
mRatBN7.28103,934,006 - 103,947,173 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8103,933,996 - 103,947,192 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8109,596,512 - 109,606,865 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,795,676 - 107,806,029 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08105,638,354 - 105,648,707 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,837,232 - 111,850,393 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,839,091 - 111,850,393 (-)Ensemblrn6Rnor6.0
Rnor_5.08111,229,075 - 111,242,236 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48108,365,896 - 108,376,263 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8103,312,918 - 103,323,287 (-)NCBICelera
RGSC_v3.18108,385,351 - 108,395,718 (-)NCBI
Cytogenetic Map8q32NCBI
CDV3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383133,573,686 - 133,590,274 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3133,573,686 - 133,590,261 (+)Ensemblhg38GRCh38
GRCh373133,292,530 - 133,309,118 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363134,775,264 - 134,791,795 (+)NCBIBuild 36Build 36hg18NCBI36
Celera3131,719,262 - 131,736,216 (+)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3130,671,912 - 130,688,602 (+)NCBIHuRef
CHM1_13133,255,826 - 133,272,510 (+)NCBICHM1_1
T2T-CHM13v2.03136,318,831 - 136,335,422 (+)NCBIT2T-CHM13v2.0
Cdv3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399103,230,301 - 103,243,034 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9103,230,293 - 103,243,039 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm389103,353,102 - 103,365,835 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9103,353,094 - 103,365,840 (-)Ensemblmm10GRCm38
MGSCv379103,255,432 - 103,268,110 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369103,211,258 - 103,223,688 (-)NCBIMGSCv36mm8
Celera9102,904,153 - 102,916,651 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map955.26NCBI
Cdv3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555014,981,664 - 4,999,745 (-)Ensembl
ChiLan1.0NW_0049555014,984,239 - 4,999,414 (-)NCBIChiLan1.0ChiLan1.0
CDV3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22131,517,120 - 131,536,036 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13131,523,841 - 131,540,764 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03130,641,137 - 130,657,664 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13138,117,079 - 138,132,961 (+)NCBIPanPan1.1PanPan1.1panPan2
CDV3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12330,464,103 - 30,483,633 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2330,475,978 - 30,481,632 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2330,443,004 - 30,462,408 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02330,983,726 - 31,003,138 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2330,986,493 - 31,003,133 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12330,677,831 - 30,697,236 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02330,735,629 - 30,755,037 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02330,983,157 - 31,002,581 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cdv3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560270,002,118 - 70,021,197 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365296,764,766 - 6,781,882 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365296,764,838 - 6,781,696 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDV3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1374,705,619 - 74,721,142 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11374,705,351 - 74,721,154 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21382,277,390 - 82,283,725 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDV3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11556,748,457 - 56,752,135 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1556,758,078 - 56,771,132 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604129,737,913 - 29,754,449 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdv3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247309,888,328 - 9,904,516 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cdv3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1894,652,880 - 94,666,081 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cdv3
112 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:27
Interacting mature miRNAs:27
Transcripts:ENSRNOT00000044956
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)897492344116428905Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8111249511117802327Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
BE120656  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,936,881 - 103,937,403 (+)MAPPERmRatBN7.2
mRatBN7.21161,681,184 - 161,681,366 (+)MAPPERmRatBN7.2
Rnor_6.01171,997,232 - 171,997,413NCBIRnor6.0
Rnor_6.08111,840,102 - 111,840,623NCBIRnor6.0
Rnor_5.08111,231,945 - 111,232,466UniSTSRnor5.0
Rnor_5.01178,994,768 - 178,994,949UniSTSRnor5.0
RGSC_v3.48108,365,972 - 108,366,493UniSTSRGSC3.4
RGSC_v3.41165,182,456 - 165,182,637UniSTSRGSC3.4
Celera1159,586,997 - 159,587,178UniSTS
Celera8103,312,994 - 103,313,515UniSTS
RH 3.4 Map11358.9UniSTS
Cytogenetic Map8q32UniSTS
Cytogenetic Map1q33UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000044956   ⟹   ENSRNOP00000040675
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8112,815,690 - 112,826,056 (-)Ensembl
mRatBN7.2 Ensembl8103,936,807 - 103,947,173 (-)Ensembl
Rnor_6.0 Ensembl8111,840,027 - 111,850,393 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000082097   ⟹   ENSRNOP00000071373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8112,815,690 - 112,825,851 (-)Ensembl
mRatBN7.2 Ensembl8103,936,807 - 103,947,192 (-)Ensembl
Rnor_6.0 Ensembl8111,839,091 - 111,850,075 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095185   ⟹   ENSRNOP00000084361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8112,813,952 - 112,826,056 (-)Ensembl
mRatBN7.2 Ensembl8103,933,996 - 103,947,173 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000154914   ⟹   ENSRNOP00000111552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8112,815,690 - 112,825,851 (-)Ensembl
RefSeq Acc Id: NM_001014097   ⟹   NP_001014119
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,815,689 - 112,826,056 (-)NCBI
mRatBN7.28103,936,806 - 103,947,173 (-)NCBI
Rnor_6.08111,840,026 - 111,850,393 (-)NCBI
Rnor_5.08111,229,075 - 111,242,236 (-)NCBI
RGSC_v3.48108,365,896 - 108,376,263 (-)RGD
Celera8103,312,918 - 103,323,287 (-)RGD
Sequence:
RefSeq Acc Id: XM_006243659   ⟹   XP_006243721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,812,898 - 112,826,073 (-)NCBI
mRatBN7.28103,934,006 - 103,947,117 (-)NCBI
Rnor_6.08111,837,232 - 111,850,336 (-)NCBI
Rnor_5.08111,229,075 - 111,242,236 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243660   ⟹   XP_006243722
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,812,898 - 112,826,073 (-)NCBI
mRatBN7.28103,934,006 - 103,947,116 (-)NCBI
Rnor_6.08111,837,232 - 111,850,336 (-)NCBI
Rnor_5.08111,229,075 - 111,242,236 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063265607   ⟹   XP_063121677
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,812,898 - 112,826,073 (-)NCBI
RefSeq Acc Id: XM_063265608   ⟹   XP_063121678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,812,898 - 112,826,073 (-)NCBI
RefSeq Acc Id: NP_001014119   ⟸   NM_001014097
- UniProtKB: Q5XIM5 (UniProtKB/Swiss-Prot),   A6I2J7 (UniProtKB/TrEMBL),   A0A0G2K0B0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243721   ⟸   XM_006243659
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006243722   ⟸   XM_006243660
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSRNOP00000071373   ⟸   ENSRNOT00000082097
Ensembl Acc Id: ENSRNOP00000040675   ⟸   ENSRNOT00000044956
Ensembl Acc Id: ENSRNOP00000084361   ⟸   ENSRNOT00000095185
RefSeq Acc Id: XP_063121677   ⟸   XM_063265607
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063121678   ⟸   XM_063265608
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000111552   ⟸   ENSRNOT00000154914

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIM5-F1-model_v2 AlphaFold Q5XIM5 1-236 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696237
Promoter ID:EPDNEW_R6756
Type:multiple initiation site
Name:Cdv3_2
Description:CDV3 homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R6757  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08111,850,000 - 111,850,060EPDNEW
RGD ID:13696232
Promoter ID:EPDNEW_R6757
Type:initiation region
Name:Cdv3_1
Description:CDV3 homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R6756  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08111,850,279 - 111,850,339EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359113 AgrOrtholog
BioCyc Gene G2FUF-29325 BioCyc
Ensembl Genes ENSRNOG00000010186 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000044956 ENTREZGENE
  ENSRNOT00000044956.3 UniProtKB/Swiss-Prot
  ENSRNOT00000095185 ENTREZGENE
IMAGE_CLONE IMAGE:7135192 IMAGE-MGC_LOAD
InterPro CDV3 UniProtKB/Swiss-Prot
KEGG Report rno:315970 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94487 IMAGE-MGC_LOAD
NCBI Gene 315970 ENTREZGENE
PANTHER PROTEIN CDV3 HOMOLOG UniProtKB/Swiss-Prot
  PTHR16284 UniProtKB/Swiss-Prot
Pfam CDV3 UniProtKB/Swiss-Prot
PhenoGen Cdv3 PhenoGen
RatGTEx ENSRNOG00000010186 RatGTEx
UniProt A0A0G2K0B0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GA98 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LY40_RAT UniProtKB/TrEMBL
  A6I2J5 ENTREZGENE, UniProtKB/TrEMBL
  A6I2J6_RAT UniProtKB/TrEMBL
  A6I2J7 ENTREZGENE, UniProtKB/TrEMBL
  A6I2J8 ENTREZGENE, UniProtKB/TrEMBL
  CDV3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-27 Cdv3  carnitine deficiency-associated gene expressed in ventricle 3  Cdv3  CDV3 homolog  Name changed 629549 APPROVED
2016-12-05 Cdv3  CDV3 homolog  Cdv3  carnitine deficiency-associated gene expressed in ventricle 3 homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-11-29 Cdv3  carnitine deficiency-associated gene expressed in ventricle 3 homolog  Cdv3  carnitine deficiency-associated gene expressed in ventricle 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-11-19 Cdv3  carnitine deficiency-associated gene expressed in ventricle 3  Cdv3  carnitine deficiency-associated gene expressed in ventricle 3 homolog (mouse)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-20 Cdv3  carnitine deficiency-associated gene expressed in ventricle 3 homolog (mouse)  LOC315970  similar to CDV-3B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 LOC315970  similar to CDV-3B      Symbol and Name status set to provisional 70820 PROVISIONAL