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Gene: Ift80 (intraflagellar transport 80) Rattus norvegicus

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Symbol:

Ift80

Name:

intraflagellar transport 80

RGD ID:

1312006

Description:

Predicted to be involved in cilium assembly. Predicted to act upstream of or within several processes, including cell surface receptor signaling pathway; intracellular signaling cassette; and skeletal system development. Predicted to be located in ciliary basal body. Predicted to be part of intraciliary transport particle B. Predicted to be active in 9+0 non-motile cilium and centrosome. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy 2. Orthologous to human IFT80 (intraflagellar transport 80); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

intraflagellar transport 80 homolog; intraflagellar transport 80 homolog (Chlamydomonas); intraflagellar transport protein 80 homolog; LOC295106; RGD1312006; similar to RIKEN cDNA 4921524P20; WD repeat domain 56; WD repeat-containing protein 56; Wdr56

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	IFT80 (intraflagellar transport 80)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ift80 (intraflagellar transport 80)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ift80 (intraflagellar transport 80)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	IFT80 (intraflagellar transport 80)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	IFT80 (intraflagellar transport 80)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ift80 (intraflagellar transport 80)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	IFT80 (intraflagellar transport 80)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	IFT80 (intraflagellar transport 80)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ift80 (intraflagellar transport 80)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ift80 (intraflagellar transport 80)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TRIM59-IFT80 (TRIM59-IFT80 readthrough (NMD candidate))	HGNC	Treefam
Alliance orthologs ³
Mus musculus (house mouse):	Ift80 (intraflagellar transport 80)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	IFT80 (intraflagellar transport 80)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ift80 (intraflagellar transport 80 homolog (Chlamydomonas))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	che-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Oseg5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ift80	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	155,455,773 - 155,550,082 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	155,455,774 - 155,550,275 (-)	Ensembl				GRCr8
mRatBN7.2	2	153,144,707 - 153,240,024 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	153,145,795 - 153,240,024 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	160,275,443 - 160,369,696 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	158,325,966 - 158,420,213 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	152,958,736 - 153,052,980 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	165,506,878 - 165,600,748 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	165,505,810 - 165,600,748 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	184,867,651 - 184,961,866 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	158,892,673 - 158,987,059 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	147,496,487 - 147,590,825 (-)	NCBI		Celera
RGSC_v3.1	2	158,842,636 - 158,937,022 (-)	NCBI
Cytogenetic Map	2	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Asphyxia (ISO)

asphyxiating thoracic dystrophy (ISO)

asphyxiating thoracic dystrophy 2 (ISO,ISS)

asphyxiating thoracic dystrophy 3 (ISS)

bone development disease (ISO)

cystic kidney disease (ISO)

Desbuquois dysplasia (ISO)

polydactyly (ISO)

respiratory failure (ISO)

retinal degeneration (ISO)

thoracic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

4-hydroxyphenyl retinamide (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chlorpyrifos (ISO)

clorgyline (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

ethanol (ISO)

folic acid (ISO)

furan (EXP)

GSK-J4 (ISO)

lead(0) (ISO)

methamphetamine (EXP)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

potassium chromate (ISO)

quercetin (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

succimer (ISO)

sunitinib (ISO)

thimerosal (ISO)

thioacetamide (EXP)

thiram (ISO)

topotecan (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (ISO)

articular cartilage development (ISO)

bone development (ISO)

bone mineralization involved in bone maturation (ISO)

bone morphogenesis (ISO)

canonical NF-kappaB signal transduction (ISO)

cartilage development (ISO)

cartilage homeostasis (ISO)

cell population proliferation (ISO)

chondrocyte differentiation (ISO)

cilium assembly (IBA,ISO)

cilium organization (ISO)

endochondral ossification (ISO)

establishment or maintenance of cell polarity (ISO)

fibroblast growth factor receptor signaling pathway (ISO)

gene expression (ISO)

growth plate cartilage development (ISO)

limb development (ISO)

multicellular organism growth (ISO)

negative regulation of epithelial cell proliferation (ISO)

negative regulation of non-canonical Wnt signaling pathway (ISO)

non-motile cilium assembly (ISO)

odontoblast differentiation (ISO)

odontogenesis (ISO)

ossification (ISO)

osteoblast differentiation (ISO)

osteoblast proliferation (ISO)

osteoclast differentiation (ISO)

phosphatidylinositol 3-kinase/protein kinase B signal transduction (ISO)

proteasomal protein catabolic process (ISO)

protein stabilization (ISO)

protein ubiquitination (ISO)

receptor localization to non-motile cilium (ISO)

response to inositol (ISO)

skeletal system development (ISO)

smoothened signaling pathway (ISO)

spinal cord development (ISO)

stem cell differentiation (ISO)

stem cell proliferation (ISO)

tissue development (ISO)

tooth eruption (ISO)

Cellular Component

9+0 non-motile cilium (IEA,ISO)

axoneme (IEA)

centrosome (IBA,IEA,ISO)

ciliary basal body (IEA,ISO)

cilium (IBA,IEA,ISO)

cytoplasm (IEA)

intraciliary transport particle A (IEA,ISO)

intraciliary transport particle B (IBA,IEA,ISO,ISS)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:19253336	PMID:21227999	PMID:21703454	PMID:22771375	PMID:23333501	PMID:23810713	PMID:24596149	PMID:24927541	PMID:25443296	PMID:26098911	PMID:26996322

Genomics

Comparative Map Data

Ift80
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	155,455,773 - 155,550,082 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	155,455,774 - 155,550,275 (-)	Ensembl				GRCr8
mRatBN7.2	2	153,144,707 - 153,240,024 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	153,145,795 - 153,240,024 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	160,275,443 - 160,369,696 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	158,325,966 - 158,420,213 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	152,958,736 - 153,052,980 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	165,506,878 - 165,600,748 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	165,505,810 - 165,600,748 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	184,867,651 - 184,961,866 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	158,892,673 - 158,987,059 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	147,496,487 - 147,590,825 (-)	NCBI		Celera
RGSC_v3.1	2	158,842,636 - 158,937,022 (-)	NCBI
Cytogenetic Map	2	q32	NCBI

IFT80
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	160,256,986 - 160,399,225 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	160,256,986 - 160,400,357 (-)	Ensembl			hg38	GRCh38
GRCh37	3	159,974,774 - 160,117,013 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	161,457,482 - 161,600,014 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	3	158,396,141 - 158,538,687 (-)	NCBI		Celera
Cytogenetic Map	3	q25.33	NCBI
HuRef	3	157,373,426 - 157,515,902 (-)	NCBI		HuRef
CHM1_1	3	159,937,988 - 160,080,209 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	163,031,586 - 163,173,837 (-)	NCBI		T2T-CHM13v2.0

Ift80
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	68,799,832 - 68,911,939 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	68,799,832 - 68,911,892 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	68,892,499 - 69,004,680 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	68,892,499 - 69,004,570 (-)	Ensembl			mm10	GRCm38
MGSCv37	3	68,696,421 - 68,808,492 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	68,980,431 - 69,092,394 (-)	NCBI		MGSCv36	mm8
Celera	3	69,005,128 - 69,112,374 (-)	NCBI		Celera
Cytogenetic Map	3	E1	NCBI
cM Map	3	32.07	NCBI

Ift80
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955448	10,808,940 - 10,819,655 (-)	NCBI	ChiLan1.0	ChiLan1.0

IFT80
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	158,193,564 - 158,335,974 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	158,198,280 - 158,340,492 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	157,279,076 - 157,421,478 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	165,327,511 - 165,469,795 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	165,329,056 - 165,454,905 (-)	Ensembl			panPan2	panpan1.1

IFT80
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	26,332,456 - 26,455,428 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	30,374,586 - 30,497,664 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	26,388,720 - 26,512,021 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	26,387,471 - 26,511,904 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	26,318,615 - 26,441,864 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	26,279,456 - 26,402,532 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	26,519,525 - 26,642,618 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ift80
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	92,197,246 - 92,324,932 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936708	238,268 - 362,519 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936708	238,302 - 362,537 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IFT80
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	99,943,208 - 100,078,148 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	99,943,203 - 100,078,148 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	108,339,643 - 108,382,860 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

IFT80
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	30,441,724 - 30,577,437 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	30,461,526 - 30,577,484 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	2,961,984 - 3,104,898 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ift80
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	38,003,902 - 38,144,277 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	38,003,437 - 38,144,312 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ift80
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	86,304,297 - 86,407,342 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ift80
1668 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	368
Count of miRNA genes:	205
Interacting mature miRNAs:	240
Transcripts:	ENSRNOT00000013216
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631566	Bp90	Blood pressure QTL 90		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	149957381	221199885	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	138595962	205135428	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	124537199	209621565	Rat
1581578	Cm49	Cardiac mass QTL 49	4.9	0.01	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	145807215	220931416	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	78269809	208420281	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	122597372	215234002	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	154723085	199723085	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	145807215	190807215	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	154723085	199723085	Rat
10043139	Iddm55	Insulin dependent diabetes mellitus QTL 55	3.1	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	150313808	195313808	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	154723085	199723085	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	154723085	199723085	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
12879845	Cm89	Cardiac mass QTL 89		0.008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	154723085	178247591	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	143565208	188565208	Rat
12879846	Cm90	Cardiac mass QTL 90		0.011	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	2	154723085	178247591	Rat
12879847	Am4	Aortic mass QTL 4		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	154723085	178247591	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	154723085	199723085	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	139067258	192287892	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1582257	Gluco21	Glucose level QTL 21	3.1	0.0035	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	120039407	159440891	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	144882354	205135428	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845182	205135428	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	139067258	184067258	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	251712708	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	78269809	205135428	Rat
2301415	Cm67	Cardiac mass QTL 67		0.003	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	154723085	178247591	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	143344967	251712708	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	143746578	205135428	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	143344967	251712708	Rat
11565180	Kidm56	Kidney mass QTL 56		0.003	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	154723085	178247591	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	114384617	215381366	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150096616	195096616	Rat
11565181	Bw176	Body weight QTL 176		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	2	154723085	178247591	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	145306936	212705578	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	113746222	205135428	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	147287892	192287892	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	114384617	215381366	Rat
738007	Anxrr7	Anxiety related response QTL 7	4.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	120339555	165339555	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	223841096	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	117415288	205135428	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	159440891	Rat
631520	Bp73	Blood pressure QTL 73		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	149806826	170653323	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150096616	195096616	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
1558653	Prcr1	Prostate cancer resistance QTL 1	5		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	2	114440891	159440891	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
1354594	Despr10	Despair related QTL 10		2e-06	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	2	116804572	161804572	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	76328396	209350714	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	145807215	173074435	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat

Markers in Region

RH130576

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	153,145,893 - 153,146,110 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	165,506,978 - 165,507,194	NCBI	Rnor6.0
Rnor_5.0	2	184,867,751 - 184,867,967	UniSTS	Rnor5.0
RGSC_v3.4	2	158,892,773 - 158,892,989	UniSTS	RGSC3.4
Celera	2	147,496,587 - 147,496,803	UniSTS
RH 3.4 Map	2	1007.2	UniSTS
Cytogenetic Map	2	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC081931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000013216 ⟹ ENSRNOP00000013216

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	155,455,774 - 155,550,275 (-)	Ensembl
mRatBN7.2 Ensembl	2	153,145,795 - 153,240,024 (-)	Ensembl
Rnor_6.0 Ensembl	2	165,506,879 - 165,600,748 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000091140 ⟹ ENSRNOP00000069823

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	153,157,697 - 153,225,994 (-)	Ensembl
Rnor_6.0 Ensembl	2	165,505,810 - 165,591,110 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116655 ⟹ ENSRNOP00000085865

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	153,145,795 - 153,226,539 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117415 ⟹ ENSRNOP00000097526

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	153,149,511 - 153,226,212 (-)	Ensembl

RefSeq Acc Id:

NM_001013911 ⟹ NP_001013933

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	155,455,773 - 155,550,003 (-)	NCBI
mRatBN7.2	2	153,145,794 - 153,240,024 (-)	NCBI
Rnor_6.0	2	165,506,878 - 165,600,748 (-)	NCBI
Rnor_5.0	2	184,867,651 - 184,961,866 (-)	NCBI
RGSC_v3.4	2	158,892,673 - 158,987,059 (-)	RGD
Celera	2	147,496,487 - 147,590,825 (-)	RGD

Sequence:

show sequence

AATCACTATGGTGACGGAAAGGTCGGGAGGCTACTTGGTAACTGGTCTGAGCTCTGAGAGCAAT
TGCCACCGCTTTCCTGGAACTTGAGTGAATACAATCAAGTGGTATTTAGCATTTCTCTGGAACT
GGAGACATGAGACTGAAGATATCTCTCTTAAAAGAACCAAAGCATCAAGAATTAGTGAGCTGCG
TGGGTTGGACTACTGCCGAGGAGCTGTACTCATGCAGTGACGATCACCAGATAGTGAAGTGGAA
CCTGTTAACCAGTGAAACCAGCCTAATCGTCAAGCTGCCTGATGACATCTACCCGATAGACCTT
CACTGGTTTCCGAAGAGTTTAGGCATAAAGAAGCAGACTCAGGCAGAAAGTTTCGTCCTCACAA
GCTCTGATGGTAAGTTTCATCTGATTTCCAAGTTAGGAAGAGTGGAAAAAAGTGTAGAAGCTCA
TTGTGGGGCTGTGCTCGCCGGAAGATGGAATTACGAAGGGACTGCATTAGTTACAGTTGGAGAA
GATGGACAAGTAAAAATCTGGTCAAAGACGGGGATGCTTAGATCAACTTTAGCTCAGCAAGGAA
TACCAGTGTATTCAGTAGCCTGGGGCCCTGATTCAGAAAAGGTTCTTTATACAGCAGGCAAACA
GCTCATCATTAAGCCTCTTCAACCAAATGCTAAAGTTTTACAGTGGAAAGCCCATGATGGAATC
ATTTTAAAAGTCGACTGGAACTCAGTTAATGATCTTATTTTATCCGCTGGTGAAGACTGTAAGT
ATAAGGTTTGGGATAGTTATGGCCGTGTGCTGTACGGTTCCCAGCCTCATGAGCACCCTATCAC
CTCAGTGGCCTGGGCTCCAGATGGGGAGTTATTTGCCGTCGGATCATTTCATACTTTACGCTTG
TGTGATAAAACTGGGTGGTCATATGCTTTAGAGAAACCCAACACTGGCAGCATATTTAATATCG
CCTGGTCTATTGATGGCACTCAGATTGCTGGAGCCTGTGGAAATGGCCATGTTGTCTTTGCACA
TGTGGTGGAGCAGCGCTGGGAGTGGAAAAATTTTCAAGTAACGCTAACGAAGAGAAGAACCATG
CAGGTTCGCAATGTTCTCAATGATGCCGTGGATTTGCTGGAGTTCCGGGACAGAGTCATTAAGG
CGTCCCTGAACCACGCACACTTGGTTGTTTCTACGTCTCTCCAGTGCTACGTGTTCTCTACGAA
GAACTGGAATACACCACTTATATTTGATCTCAAAGAAGGAACTGTTAGTTTAATTCTGCAGGCA
GAAAGACATTTTCTTCTGGTGGATGGCGGTGGTATCTACCTTCACTCTTATGAAGGCCGCTTCA
TTTCTTCTCCAAAGTTTCCCGGCATGAGAACAGACATCCTGAACGCTCAGACTGTGTCTCTGAG
CAACGACACGATAGCAATAAAAGACAAAGCCGATGAGAAGATAATCTTCCTCTTTGAGGCTTCA
ACTGGAAAACCCTTAGGGGATGGGAAACTTCTTTCTCATAAGAATGAAATCTCAGAAGTTGCTC
TGGATCAAAAAGGACTTACCAATGACAGAAAAATTGCTTTCATTGATAAAAACAGAGATCTCTA
TATCACCTCAGTGAAACGATTTGGGAAAGAAGAACAGATTATTAAACTTGGAACCATGGTACAT
ACTTTGGCATGGTGTGATACATGCAATATCCTCTGTGGACTTCAAGATACGCGATTCACAGTAT
GGTATTACCCTAATGCTGTTTATGTGGACAGAGACATTCTGCCTAAAACATTGTATGAAAGAGA
TGCAAGTGAATATAGTAAAAACCCACATATAGTGAGTTTTGTTGGAAATCAGGTAACTGTAAGA
AGAGCTGATGGCTCCCTGGTACACATCAGCATTTCACCGTACCCTGCTATTCTCCATGAATATG
TGAGCAGCTCAAAATGGGAAGACGCCGTAAGGCTCTGCCGCTTTGTTAAGGAGCAAAGCCTGTG
GGCTTGCCTAGCGGCTATGGCAGTTGCTAATCGAGATATGGTTACTGCAGAAATAGCCTATGCG
GCAGTTGGGGAAATCGATAAAGTTCGGTACATCAATGCTATGAAAGATCTTCCATCTAGAGAGT
CAAAAATGGCCCACATACTAATGTTTAGTGGGAACATCCAGGAGGCTGAAACAATACTTCTCCA
GGCTGGCCTCGTTTATCAAGCAATACAGATCAACATTAATCTCTATAACTGGGAAAGGGCACTG
GAATTGGCTGTAAAGTACAAAACCCATGTTGATACAGTTCTTGCTTATCGTCAAAAGTTTTTGG
AGACATTTGGTAAACAGGAAACGAATAAACGATATTTGCAATACGCAGAAGGCCTCCAAATAGA
CTGGGAGAAAATCAAAGCGAAAATCGAGATGGAAATTACGAAAGAACGAGACCGGTCATCCAGC
GGCCAGTCCAGCAAGAATACGGGCTTAAAGCCCTAAGTGCCATGCCAACCTCTACCTAGTGCGG
AATAACCAAAGATGTGCATGTTTTGTTTGCTTAAAAAAAAAGGCATAATTTTAAGGCTAGTGGT
GTCTCTTGATGGTAGAGCACTTGCCTAGCATGCATGAGGCCCTGGGTTTGATCCCCAGCCCTGT
CAAAAGAATAAGTGTATGCACTTTCTGTGTATTTAATACTTAAGGTACATTCAGGAAGATTAAG
CACAAAATAACTTACACAATTCCATCATTTATATTTTTCTAGTCTAATAATTAAGAAAATATTT
CTATATGCTTATCTATGCCCTAGGAGTGTGGATTACATTCCAGTTTTTTTTTCATTTCTTTATT
TCTGGTTCTTCAGTATGAATAGCTATTAATTCTTATAATAAAGCCTTGAGTTATTTACAGTGTA
AAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039102020 ⟹ XP_038957948

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	155,455,773 - 155,540,362 (-)	NCBI
mRatBN7.2	2	153,144,707 - 153,239,896 (-)	NCBI

RefSeq Acc Id:

XM_063281591 ⟹ XP_063137661

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	155,455,773 - 155,550,082 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001013933	(Get FASTA)	NCBI Sequence Viewer
	NP_001426391	(Get FASTA)	NCBI Sequence Viewer
	XP_038957948	(Get FASTA)	NCBI Sequence Viewer
	XP_063137661	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81931	(Get FASTA)	NCBI Sequence Viewer
	AAH81937	(Get FASTA)	NCBI Sequence Viewer
	EDM00913	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000013216
	ENSRNOP00000013216.5
GenBank Protein	Q66HB3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001013933 ⟸ NM_001013911

- UniProtKB:

Q66HB3 (UniProtKB/Swiss-Prot), A0A8I6GEE4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRLKISLLKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSLIVKLPDDIYPIDLHW
FPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVTVGEDG
QVKIWSKTGMLRSTLAQQGIPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIIL
KVDWNSVNDLILSAGEDCKYKVWDSYGRVLYGSQPHEHPITSVAWAPDGELFAVGSFHTLRLCD
KTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHVVFAHVVEQRWEWKNFQVTLTKRRTMQV
RNVLNDAVDLLEFRDRVIKASLNHAHLVVSTSLQCYVFSTKNWNTPLIFDLKEGTVSLILQAER
HFLLVDGGGIYLHSYEGRFISSPKFPGMRTDILNAQTVSLSNDTIAIKDKADEKIIFLFEASTG
KPLGDGKLLSHKNEISEVALDQKGLTNDRKIAFIDKNRDLYITSVKRFGKEEQIIKLGTMVHTL
AWCDTCNILCGLQDTRFTVWYYPNAVYVDRDILPKTLYERDASEYSKNPHIVSFVGNQVTVRRA
DGSLVHISISPYPAILHEYVSSSKWEDAVRLCRFVKEQSLWACLAAMAVANRDMVTAEIAYAAV
GEIDKVRYINAMKDLPSRESKMAHILMFSGNIQEAETILLQAGLVYQAIQININLYNWERALEL
AVKYKTHVDTVLAYRQKFLETFGKQETNKRYLQYAEGLQIDWEKIKAKIEMEITKERDRSSSGQ
SSKNTGLKP

hide sequence

Ensembl Acc Id:

ENSRNOP00000069823 ⟸ ENSRNOT00000091140

Ensembl Acc Id:

ENSRNOP00000013216 ⟸ ENSRNOT00000013216

RefSeq Acc Id:	XP_038957948 ⟸ XM_039102020
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000097526 ⟸ ENSRNOT00000117415

Ensembl Acc Id:

ENSRNOP00000085865 ⟸ ENSRNOT00000116655

RefSeq Acc Id:	XP_063137661 ⟸ XM_063281591
- Peptide Label:	isoform X1

Protein Domains

IFT80 second beta-propeller IFT80/172/WDR35 TPR

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q66HB3-F1-model_v2	AlphaFold	Q66HB3	1-777	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691369

Promoter ID:

EPDNEW_R1894

Type:

initiation region

Name:

Ift80_1

Description:

intraflagellar transport 80

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	165,600,716 - 165,600,776	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1312006	AgrOrtholog
BioCyc Gene	G2FUF-52844	BioCyc
Ensembl Genes	ENSRNOG00000009808	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000013216	ENTREZGENE
	ENSRNOT00000013216.7	UniProtKB/Swiss-Prot
Gene3D-CATH	1.25.40.470	UniProtKB/Swiss-Prot
	2.130.10.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7113994	IMAGE-MGC_LOAD
	IMAGE:7115382	IMAGE-MGC_LOAD
InterPro	Beta-prop_IFT80_2nd	UniProtKB/Swiss-Prot
	TPR_IFT80_172_dom	UniProtKB/Swiss-Prot
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/Swiss-Prot
	WD40_repeat	UniProtKB/Swiss-Prot
	WD40_repeat_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:295106	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93952	IMAGE-MGC_LOAD
	MGC:93991	IMAGE-MGC_LOAD
NCBI Gene	295106	ENTREZGENE
PANTHER	INTRAFLAGELLAR TRANSPORT PROTEIN 80 HOMOLOG	UniProtKB/Swiss-Prot
	OUTER SEGMENT 5	UniProtKB/Swiss-Prot
Pfam	Beta-prop_IFT80_2nd	UniProtKB/Swiss-Prot
	TPR_IFT80_172	UniProtKB/Swiss-Prot
	WD40	UniProtKB/Swiss-Prot
PhenoGen	Ift80	PhenoGen
PROSITE	WD_REPEATS_2	UniProtKB/Swiss-Prot
	WD_REPEATS_REGION	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000009808	RatGTEx
SMART	WD40	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF50978	UniProtKB/Swiss-Prot
UniProt	A0A8I6GEE4	ENTREZGENE
	A6J5M6	ENTREZGENE, UniProtKB/TrEMBL
	IFT80_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-07-09	Ift80	intraflagellar transport 80	Ift80	intraflagellar transport 80 homolog (Chlamydomonas)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Ift80	intraflagellar transport 80 homolog (Chlamydomonas)	RGD1312006	similar to RIKEN cDNA 4921524P20	Symbol and Name updated	1299863	APPROVED
2005-12-06	RGD1312006	similar to RIKEN cDNA 4921524P20	RGD1312006_predicted	similar to RIKEN cDNA 4921524P20 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1312006_predicted	similar to RIKEN cDNA 4921524P20 (predicted)	LOC295106_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC295106_predicted	similar to RIKEN cDNA 4921524P20 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

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Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

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Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM