Ift80 (intraflagellar transport 80)

Gene: Ift80 (intraflagellar transport 80) Ictidomys tridecemlineatus

Analyze

Symbol:

Ift80

Name:

intraflagellar transport 80

RGD ID:

12491504

Description:

INVOLVED IN apoptotic process (ortholog); articular cartilage development (ortholog); bone development (ortholog); ASSOCIATED WITH Asphyxia (ortholog); asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); FOUND IN 9+0 non-motile cilium (ortholog); intraciliary transport particle B (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

intraflagellar transport 80 homolog; intraflagellar transport 80, transcript variant X1; intraflagellar transport 80, transcript variant X2; intraflagellar transport protein 80 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	92,197,246 - 92,324,932 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936708	238,268 - 362,519 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936708	238,302 - 362,537 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Asphyxia (ISO)

asphyxiating thoracic dystrophy (ISO)

asphyxiating thoracic dystrophy 1 (ISO)

asphyxiating thoracic dystrophy 2 (ISO)

asphyxiating thoracic dystrophy 3 (ISO)

Beemer-Langer syndrome (ISO)

bone development disease (ISO)

connective tissue disease (ISO)

cystic kidney disease (ISO)

genetic disease (ISO)

polydactyly (ISO)

respiratory failure (ISO)

retinal degeneration (ISO)

short-rib thoracic dysplasia 10 with or without polydactyly (ISO)

short-rib thoracic dysplasia 6 with or without polydactyly (ISO)

thoracic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (ISO)

articular cartilage development (IEA,ISO)

bone development (ISO)

bone mineralization involved in bone maturation (IEA,ISO)

bone morphogenesis (IEA,ISO)

canonical NF-kappaB signal transduction (ISO)

cartilage development (ISO)

cell population proliferation (ISO)

chondrocyte differentiation (IEA,ISO)

cilium assembly (IEA,ISO)

endochondral ossification (IEA,ISO)

establishment or maintenance of cell polarity (ISO)

fibroblast growth factor receptor signaling pathway (ISO)

gene expression (ISO)

growth plate cartilage chondrocyte differentiation (IEA,ISO)

growth plate cartilage development (IEA,ISO)

keratinocyte proliferation (IEA,ISO)

limb development (IEA,ISO)

multicellular organism growth (ISO)

negative regulation of keratinocyte proliferation (IEA,ISO)

negative regulation of non-canonical Wnt signaling pathway (IEA,ISO)

non-canonical Wnt signaling pathway (IEA,ISO)

non-motile cilium assembly (IEA,ISO)

odontoblast differentiation (ISO)

odontogenesis (ISO)

ossification (ISO)

osteoblast differentiation (IEA,ISO)

osteoblast proliferation (IEA,ISO)

osteoclast differentiation (ISO)

phosphatidylinositol 3-kinase/protein kinase B signal transduction (ISO)

proteasomal protein catabolic process (ISO)

protein stabilization (ISO)

protein ubiquitination (ISO)

receptor localization to non-motile cilium (IEA,ISO)

skeletal system development (IEA,ISO)

smoothened signaling pathway (IEA,ISO)

stem cell differentiation (ISO)

stem cell proliferation (ISO)

tooth eruption (ISO)

Cellular Component

9+0 non-motile cilium (IEA,ISO)

centrosome (IEA)

ciliary basal body (IEA)

cilium (IEA)

intraciliary transport particle B (IEA,ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Ift80
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	92,197,246 - 92,324,932 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936708	238,268 - 362,519 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936708	238,302 - 362,537 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IFT80
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	160,256,986 - 160,399,225 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	160,256,986 - 160,399,880 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	159,974,774 - 160,117,013 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	161,457,482 - 161,600,014 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	158,396,141 - 158,538,687 (-)	NCBI		Celera
Cytogenetic Map	3	q25.33	NCBI
HuRef	3	157,373,426 - 157,515,902 (-)	NCBI		HuRef
CHM1_1	3	159,937,988 - 160,080,209 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	163,031,586 - 163,173,837 (-)	NCBI		T2T-CHM13v2.0

Ift80
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	68,799,832 - 68,911,939 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	68,799,832 - 68,911,892 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	68,892,499 - 69,004,680 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	68,892,499 - 69,004,570 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	68,696,421 - 68,808,492 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	68,980,431 - 69,092,394 (-)	NCBI		MGSCv36	mm8
Celera	3	69,005,128 - 69,112,374 (-)	NCBI		Celera
Cytogenetic Map	3	E1	NCBI
cM Map	3	32.07	NCBI

Ift80
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	155,455,773 - 155,550,082 (-)	NCBI		GRCr8
mRatBN7.2	2	153,144,707 - 153,240,024 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	153,145,795 - 153,240,024 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	160,275,443 - 160,369,696 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	158,325,966 - 158,420,213 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	152,958,736 - 153,052,980 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	165,506,878 - 165,600,748 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	165,505,810 - 165,600,748 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	184,867,651 - 184,961,866 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	158,892,673 - 158,987,059 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	158,842,636 - 158,937,022 (-)	NCBI
Celera	2	147,496,487 - 147,590,825 (-)	NCBI		Celera
Cytogenetic Map	2	q32	NCBI

Ift80
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955448	10,808,940 - 10,819,655 (-)	NCBI	ChiLan1.0	ChiLan1.0

IFT80
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	158,193,564 - 158,335,974 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	158,198,280 - 158,340,492 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	157,279,076 - 157,421,478 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	165,327,511 - 165,469,795 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	165,329,056 - 165,454,905 (-)	Ensembl	panpan1.1		panPan2

IFT80
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	26,332,456 - 26,455,428 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	30,374,586 - 30,497,664 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	26,388,720 - 26,512,021 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	26,387,471 - 26,511,904 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	26,318,615 - 26,441,864 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	26,279,456 - 26,402,532 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	26,519,525 - 26,642,618 (-)	NCBI		UU_Cfam_GSD_1.0

IFT80
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	99,943,208 - 100,078,148 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	99,943,203 - 100,078,148 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	108,339,643 - 108,382,860 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

IFT80
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	30,441,724 - 30,577,437 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	30,461,526 - 30,577,484 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	2,961,984 - 3,104,898 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ift80
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	38,003,902 - 38,144,277 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	38,003,437 - 38,144,312 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005338288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040270011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040270012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040270013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000024198 ⟹ ENSSTOP00000019551

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936708	238,379 - 362,519 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000038521 ⟹ ENSSTOP00000030986

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936708	238,268 - 348,105 (-)	Ensembl

RefSeq Acc Id:

XM_005338288 ⟹ XP_005338345

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	92,197,246 - 92,324,932 (-)	NCBI
SpeTri2.0	NW_004936708	238,302 - 362,537 (-)	NCBI

Sequence:

show sequence

GAGGGAGAAAACCTAGAGCTTAGAAGTCGCTATGGTGACGGAAAGGTTGGGAATCTTCTCTATT
ACTGGCCCCACAGCTGTAGGAGCAGTAACCGCTGCTTTCTTGGATTTTGAGTGAATACAGTCCA
AGTGATATTTTAAAAATTTGCTGAAAGTGGAAACATGAGACTGAAGATATCTCTTTTAAAAGAA
CCAAAGCATCAAGAATTAGTAAGTTGTGTGGGCTGGACTACTGCTGAAGAATTATATTCATGTA
GTGATGATCACCAGATAGTGAAATGGAACTTGTTAACCAGTGAAACAAGTCAAATTGTAAAGCT
TCCTGATGATATTTACCCTATAGATCTTCACTGGTTTCCAAAAAGTTTAGGCATAAAGAAACAG
ACACAAGCAGAAAGCTTTGTTCTCACAAGTTCTGATGGTAAATTTCATTTGATTTCTAAGTTAG
GAAGAGTCGAGAAAAGTGTAGAAGCTCACTGTGGAGCAGTACTTGCAGGAAGATGGAACTATGA
AGGTACAGCACTAGTTACAGTTGGAGAAGATGGACAAATTAAAATTTGGTCAAAGACTGGGATG
CTTAGATCAACTTTAGCTCAGCAAGGAACACCAGTGTATTCAGTAGCATGGGGCCCTGATTCAG
AAAAGGTTCTTTATACAGCAGGCAAACAGCTGATCATTAAACCTCTTCAACCAAATGCTAAAAT
TTTACAGTGGAAAGCTCATGATGGCATTATTTTAAAAGTTGATTGGAACTCAGTCAATGATCTT
ATTTTATCTGCTGGTGAAGATTGTAAATATAAGGTGTGGGATAGTTATGGCCGCCTCCTATACA
GTTCACAACCCCATGAGCATCCTATTACCTCAGTTGCCTGGGCTCCAGATGGAGAATTATTTGC
TGTTGGATCATTTCATACTTTACGCTTGTGTGATAAAACTGGGTGGTCTTATGCTTTAGAAAAA
CCCAACACTGGCAGCATATTTAATATTGCATGGTCAATTGATGGCACTCAGATTGCTGGAGCCT
GCGGAAATGGGCATGTTGTTTTTGCACATGTAGTGGAGCAACGTTGGGAGTGGAAAAATTTTCA
AATAACATTAACTAAAAGACGGACTATGCAGGTTCGAAATGTTCTTAATGATGCAGTGGATTTG
CTGGAATTCCGCGATAGAGTCATTAAAGCATCTTTGAACTATGCACACTTAGTTGTTTCAACGT
CTCTTCAATGTTATGTGTTCTCTACAAAGAACTGGAATACACCACTTATATTTGATCTTAAAGA
AGGAACTGTTAGTTTAATTCTACAGGCAGAAAGACATTTTCTTCTTGTAGATGGTGGTGGTATC
TATGTATATTCCTATGAAGGGCGCTTCATTTCTTCTCCAAAATTTCCTGGAATGAGAACAGATA
TTCTTAATGCACAGACTGTGTCTCTGAGTAATGATACTATAGCAATAAAAGACAAAGCTGATGA
AAAAATAATCTTCCTTTTTGAGGCATCAACTGGAAAACCTCTAGGTGATGGGAAGCTTCTTTCT
CATAAGAATGAAATCTTGGAAATTGCTCTGGATCAAAAAGGACTTACCAATGATAGAAAAATTG
CATTCATTGATAAAAATAGAGATCTCTATATCACTTCAGTGAAACGATTTGGGAAGGAAGAACA
AATTATCAAACTTGGAACAATGGTGCATACTTTGGCATGGTGTGATACATGCAATATCCTTTGT
GGACTTCAAGATACTCGATTCACAGTGTGGTATTACCCCAATACGGTTTATGTGGACAGAGACA
TTTTGCCTAAAACTTTGTATGAAAGAGATGCAAGTGAATTTAATAAAAATCCTCATATTGTGAG
TTTTGTTGGAAATCAGGTAACTATAAGAAGAGCTGATGGCTCCCTGGTACACATCAGCATATCA
CCATATCCTGCTATTCTCCATGAATATGTAAGCAGTTCAAAATGGGAGGATGCTGTAAGACTTT
GTCGCTTTGTTAAGGAGCAAACCATGTGGGCTTGCCTAGCTGCTATGGCAGTTGCTAATCGAGA
CATGACTACTGCAGAAATAGCCTATGCAGCAATTGGTGAGATTGATAAGGTTCAATACATCAAT
TCAATAAAAGATCTTCCCTCTAAAGAATCAAAAATGGCTCACATACTAATGTTTAGTGGAAACA
TACAGGAGGCTGAAATAATACTTCTTCAAGCTGGCCTTATTTATCAAGCAATTCAGATCAATAT
TAATCTCTATAACTGGGAAAGAGCCCTGGAGTTGGCTGTAAAATACAAAACACATGTTGATACA
GTTCTTGCTTACCGTCAAAAGTTTTTGGAGACCTTTGGTAAACAGGAAACTAATAAACGATACT
TGCAATATGGAGAAGGTCTTCAAATAGATTGGGAGAAAATCAAAGCCAAAATTGAGATGGAAAT
TACTAAGGAACGAGAGCGATCATCAAGCAGCCTGTCCAGCAAGAACATGGGGCTAAAGCACTAA
GTGACATGCTAACCTTTAAAAATGTTATCTTTTGAAATTAATTTTGACTAGACAAAGATAAGCA
TGTTTTGGTTGCTAAAGAAAAATGCATCATCTTTAAATAATAATGAGCACTTTCTGCATATTAG
TAAAAGTACATTCAATTCAGTAAGGTTAAGCGAAGAATAATTGATGTAATGCCATCTTTTATAT
TTTTCTAATTAGCCATTTCTTTATACGTCTCTATACCTGTTGATTACATTCCAGTTTTTTCTTT
ATTACTTTATCCCTGAATCTTCAGTATCAACAATTTTAATGCTGATAATAGAACATTGAATTCT
TTAAAATGTATGCTATCATTAATTTATTTGACCTCCACATTGTAAAACACCTCCAAAATTTATT
TAAAAAAATTGATAATGATGGATTTTTGAAAATGTGTAACAGTGTAGACACTTGAATACTGAAG
TTCAAAGCAGCATTATTTGAATAGTAATGGGTGAAAACAACTCAAATATCCATCAACAGATGAG
TGATAAACCAGTGTGGTATGCACATACAATAAAATATTATTTACTGTTACCATGAAATTAAATT
CTATTACATGCTACAAGATGGAAAAATTATGCAAAATGAAATAAACCAGACACAAAGGTGTAAT
AGTCTGTGATACTACTTATATGAGAATAAGCAAATTCATAGAGACAGAAAGGAAAATAGTGATT
ATCAGTGATCAGAGGGAGGCGGAGGAGTTTATCATTTAAAGGACATAAAGTTTATGTTTAGGAT
AAACAAATTCTGGAAATACAGATAGTGGTTGTGGCCTCACAACATCATAAATATTAATGCCTCT
GAATTATAGTCTTAAAATGATTAAAATGCTAAATCTTATTATGTAATTTTAACATAATTTAAAA
AACATATATAGAATAAGCAAGAGGTATTTCCCTTATTCCTCTCCTGACTTGAGAATGTTCTGGC
TATAGGCCCTGGGAATCTGAAAGATTTGTGAAAATCTCCTTAGATAATAAACCTATTTGACTAG
CTTTAACTCAGTGTGTCCCAAAATTATTATTACCACAAAAATTTTTTAACAATAATACAAAGAT
CCTTTAGAAAGCCTCCCATTGGCAACAGTACATTATAGAGTGGGTATGTGCATATACATTGGAA
AGGGATTAACTCTTTTACCTCCATTTTAATTACTCTTTAGTTTTTTTCTTTTATAAAAATGTTC
TTTACTTTTCAACACATTTCTTTTCTGAAATGTTGGAATATGCTATTCTTGATGCAGATGCTGC
ATATAAGGATGTATTCAGTTTGTGAAATCTGACTAATCAGTTTATTTGTAAGTTGTCCTGAAAA
GTTTATATATGCTTTCTATATTGTTATATTTCAATGAAAAGCTTAAAAATAAAATAGTTTAAAG

hide sequence

RefSeq Acc Id:

XM_021735234 ⟹ XP_021590909

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	92,197,246 - 92,324,932 (-)	NCBI
SpeTri2.0	NW_004936708	238,302 - 362,537 (-)	NCBI

Sequence:

show sequence

GAGGGAGAAAACCTAGAGCTTAGAAGTCGCTATGGTGACGGAAAGGTTGGGAATCTTCTCTATT
ACTGGCCCCACAGCTGTAGGAGCAGTAACCGCTGCTTTCTTGGATTTTGAGTGAATACAGTCCA
AGTGATATTTTAAAAATTTGCTGAAAGTGGAAACATGAGACTGAAGATATCTCTTTTAAAAGAA
CCAAAGCATCAAGAATTAGTAAGTTGTGTGGGCTGGACTACTGCTGAAGAATTATATTCATGTA
GTGATGATCACCAGATAGTGAAATGGAACTTGTTAACCAGTGAAACAAGTCAAATTGTAAAGCT
TCCTGATGATATTTACCCTATAGATCTTCACTGGTTTCCAAAAAGTTTAGGCATAAAGAAACAG
ACACAAGCAGAAAGCTTTGTTCTCACAAGTTCTGATGTTGGAGAAGATGGACAAATTAAAATTT
GGTCAAAGACTGGGATGCTTAGATCAACTTTAGCTCAGCAAGGAACACCAGTGTATTCAGTAGC
ATGGGGCCCTGATTCAGAAAAGGTTCTTTATACAGCAGGCAAACAGCTGATCATTAAACCTCTT
CAACCAAATGCTAAAATTTTACAGTGGAAAGCTCATGATGGCATTATTTTAAAAGTTGATTGGA
ACTCAGTCAATGATCTTATTTTATCTGCTGGTGAAGATTGTAAATATAAGGTGTGGGATAGTTA
TGGCCGCCTCCTATACAGTTCACAACCCCATGAGCATCCTATTACCTCAGTTGCCTGGGCTCCA
GATGGAGAATTATTTGCTGTTGGATCATTTCATACTTTACGCTTGTGTGATAAAACTGGGTGGT
CTTATGCTTTAGAAAAACCCAACACTGGCAGCATATTTAATATTGCATGGTCAATTGATGGCAC
TCAGATTGCTGGAGCCTGCGGAAATGGGCATGTTGTTTTTGCACATGTAGTGGAGCAACGTTGG
GAGTGGAAAAATTTTCAAATAACATTAACTAAAAGACGGACTATGCAGGTTCGAAATGTTCTTA
ATGATGCAGTGGATTTGCTGGAATTCCGCGATAGAGTCATTAAAGCATCTTTGAACTATGCACA
CTTAGTTGTTTCAACGTCTCTTCAATGTTATGTGTTCTCTACAAAGAACTGGAATACACCACTT
ATATTTGATCTTAAAGAAGGAACTGTTAGTTTAATTCTACAGGCAGAAAGACATTTTCTTCTTG
TAGATGGTGGTGGTATCTATGTATATTCCTATGAAGGGCGCTTCATTTCTTCTCCAAAATTTCC
TGGAATGAGAACAGATATTCTTAATGCACAGACTGTGTCTCTGAGTAATGATACTATAGCAATA
AAAGACAAAGCTGATGAAAAAATAATCTTCCTTTTTGAGGCATCAACTGGAAAACCTCTAGGTG
ATGGGAAGCTTCTTTCTCATAAGAATGAAATCTTGGAAATTGCTCTGGATCAAAAAGGACTTAC
CAATGATAGAAAAATTGCATTCATTGATAAAAATAGAGATCTCTATATCACTTCAGTGAAACGA
TTTGGGAAGGAAGAACAAATTATCAAACTTGGAACAATGGTGCATACTTTGGCATGGTGTGATA
CATGCAATATCCTTTGTGGACTTCAAGATACTCGATTCACAGTGTGGTATTACCCCAATACGGT
TTATGTGGACAGAGACATTTTGCCTAAAACTTTGTATGAAAGAGATGCAAGTGAATTTAATAAA
AATCCTCATATTGTGAGTTTTGTTGGAAATCAGGTAACTATAAGAAGAGCTGATGGCTCCCTGG
TACACATCAGCATATCACCATATCCTGCTATTCTCCATGAATATGTAAGCAGTTCAAAATGGGA
GGATGCTGTAAGACTTTGTCGCTTTGTTAAGGAGCAAACCATGTGGGCTTGCCTAGCTGCTATG
GCAGTTGCTAATCGAGACATGACTACTGCAGAAATAGCCTATGCAGCAATTGGTGAGATTGATA
AGGTTCAATACATCAATTCAATAAAAGATCTTCCCTCTAAAGAATCAAAAATGGCTCACATACT
AATGTTTAGTGGAAACATACAGGAGGCTGAAATAATACTTCTTCAAGCTGGCCTTATTTATCAA
GCAATTCAGATCAATATTAATCTCTATAACTGGGAAAGAGCCCTGGAGTTGGCTGTAAAATACA
AAACACATGTTGATACAGTTCTTGCTTACCGTCAAAAGTTTTTGGAGACCTTTGGTAAACAGGA
AACTAATAAACGATACTTGCAATATGGAGAAGGTCTTCAAATAGATTGGGAGAAAATCAAAGCC
AAAATTGAGATGGAAATTACTAAGGAACGAGAGCGATCATCAAGCAGCCTGTCCAGCAAGAACA
TGGGGCTAAAGCACTAAGTGACATGCTAACCTTTAAAAATGTTATCTTTTGAAATTAATTTTGA
CTAGACAAAGATAAGCATGTTTTGGTTGCTAAAGAAAAATGCATCATCTTTAAATAATAATGAG
CACTTTCTGCATATTAGTAAAAGTACATTCAATTCAGTAAGGTTAAGCGAAGAATAATTGATGT
AATGCCATCTTTTATATTTTTCTAATTAGCCATTTCTTTATACGTCTCTATACCTGTTGATTAC
ATTCCAGTTTTTTCTTTATTACTTTATCCCTGAATCTTCAGTATCAACAATTTTAATGCTGATA
ATAGAACATTGAATTCTTTAAAATGTATGCTATCATTAATTTATTTGACCTCCACATTGTAAAA
CACCTCCAAAATTTATTTAAAAAAATTGATAATGATGGATTTTTGAAAATGTGTAACAGTGTAG
ACACTTGAATACTGAAGTTCAAAGCAGCATTATTTGAATAGTAATGGGTGAAAACAACTCAAAT
ATCCATCAACAGATGAGTGATAAACCAGTGTGGTATGCACATACAATAAAATATTATTTACTGT
TACCATGAAATTAAATTCTATTACATGCTACAAGATGGAAAAATTATGCAAAATGAAATAAACC
AGACACAAAGGTGTAATAGTCTGTGATACTACTTATATGAGAATAAGCAAATTCATAGAGACAG
AAAGGAAAATAGTGATTATCAGTGATCAGAGGGAGGCGGAGGAGTTTATCATTTAAAGGACATA
AAGTTTATGTTTAGGATAAACAAATTCTGGAAATACAGATAGTGGTTGTGGCCTCACAACATCA
TAAATATTAATGCCTCTGAATTATAGTCTTAAAATGATTAAAATGCTAAATCTTATTATGTAAT
TTTAACATAATTTAAAAAACATATATAGAATAAGCAAGAGGTATTTCCCTTATTCCTCTCCTGA
CTTGAGAATGTTCTGGCTATAGGCCCTGGGAATCTGAAAGATTTGTGAAAATCTCCTTAGATAA
TAAACCTATTTGACTAGCTTTAACTCAGTGTGTCCCAAAATTATTATTACCACAAAAATTTTTT
AACAATAATACAAAGATCCTTTAGAAAGCCTCCCATTGGCAACAGTACATTATAGAGTGGGTAT
GTGCATATACATTGGAAAGGGATTAACTCTTTTACCTCCATTTTAATTACTCTTTAGTTTTTTT
CTTTTATAAAAATGTTCTTTACTTTTCAACACATTTCTTTTCTGAAATGTTGGAATATGCTATT
CTTGATGCAGATGCTGCATATAAGGATGTATTCAGTTTGTGAAATCTGACTAATCAGTTTATTT
GTAAGTTGTCCTGAAAAGTTTATATATGCTTTCTATATTGTTATATTTCAATGAAAAGCTTAAA
AATAAAATAGTTTAAAG

hide sequence

RefSeq Acc Id:

XM_040270011 ⟹ XP_040125945

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	92,197,246 - 92,324,932 (-)	NCBI

RefSeq Acc Id:

XM_040270012 ⟹ XP_040125946

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	92,197,246 - 92,324,911 (-)	NCBI

RefSeq Acc Id:

XM_040270013 ⟹ XP_040125947

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	92,197,246 - 92,324,915 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005338345	(Get FASTA)	NCBI Sequence Viewer
	XP_021590909	(Get FASTA)	NCBI Sequence Viewer
	XP_040125945	(Get FASTA)	NCBI Sequence Viewer
	XP_040125946	(Get FASTA)	NCBI Sequence Viewer
	XP_040125947	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000019551.2
	ENSSTOP00000030986.1
GenBank Protein	KAG3270926	(Get FASTA)	NCBI Sequence Viewer
	KAG3270927	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005338345 ⟸ XM_005338288
- Peptide Label:	isoform X1
- UniProtKB:	I3N5A5 (UniProtKB/TrEMBL), A0A287DBW3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRLKISLLKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSQIVKLPDDIYPIDLHW FPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVTVGEDG QIKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKILQWKAHDGIIL KVDWNSVNDLILSAGEDCKYKVWDSYGRLLYSSQPHEHPITSVAWAPDGELFAVGSFHTLRLCD KTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHVVFAHVVEQRWEWKNFQITLTKRRTMQV RNVLNDAVDLLEFRDRVIKASLNYAHLVVSTSLQCYVFSTKNWNTPLIFDLKEGTVSLILQAER HFLLVDGGGIYVYSYEGRFISSPKFPGMRTDILNAQTVSLSNDTIAIKDKADEKIIFLFEASTG KPLGDGKLLSHKNEILEIALDQKGLTNDRKIAFIDKNRDLYITSVKRFGKEEQIIKLGTMVHTL AWCDTCNILCGLQDTRFTVWYYPNTVYVDRDILPKTLYERDASEFNKNPHIVSFVGNQVTIRRA DGSLVHISISPYPAILHEYVSSSKWEDAVRLCRFVKEQTMWACLAAMAVANRDMTTAEIAYAAI GEIDKVQYINSIKDLPSKESKMAHILMFSGNIQEAEIILLQAGLIYQAIQININLYNWERALEL AVKYKTHVDTVLAYRQKFLETFGKQETNKRYLQYGEGLQIDWEKIKAKIEMEITKERERSSSSL SSKNMGLKH hide sequence

RefSeq Acc Id:	XP_021590909 ⟸ XM_021735234
- Peptide Label:	isoform X2
- UniProtKB:	A0A287DBW3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRLKISLLKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSQIVKLPDDIYPIDLHW FPKSLGIKKQTQAESFVLTSSDVGEDGQIKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYT AGKQLIIKPLQPNAKILQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRLLYSSQPHE HPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHV VFAHVVEQRWEWKNFQITLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNYAHLVVSTSLQCYV FSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYVYSYEGRFISSPKFPGMRTDILNAQT VSLSNDTIAIKDKADEKIIFLFEASTGKPLGDGKLLSHKNEILEIALDQKGLTNDRKIAFIDKN RDLYITSVKRFGKEEQIIKLGTMVHTLAWCDTCNILCGLQDTRFTVWYYPNTVYVDRDILPKTL YERDASEFNKNPHIVSFVGNQVTIRRADGSLVHISISPYPAILHEYVSSSKWEDAVRLCRFVKE QTMWACLAAMAVANRDMTTAEIAYAAIGEIDKVQYINSIKDLPSKESKMAHILMFSGNIQEAEI ILLQAGLIYQAIQININLYNWERALELAVKYKTHVDTVLAYRQKFLETFGKQETNKRYLQYGEG LQIDWEKIKAKIEMEITKERERSSSSLSSKNMGLKH hide sequence

RefSeq Acc Id:	XP_040125945 ⟸ XM_040270011
- Peptide Label:	isoform X3
- UniProtKB:	A0A287DBW3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040125947 ⟸ XM_040270013
- Peptide Label:	isoform X4
- UniProtKB:	A0A287DBW3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040125946 ⟸ XM_040270012
- Peptide Label:	isoform X4
- UniProtKB:	A0A287DBW3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000019551 ⟸ ENSSTOT00000024198

RefSeq Acc Id:

ENSSTOP00000030986 ⟸ ENSSTOT00000038521

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000026740	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000024198.2	UniProtKB/TrEMBL
	ENSSTOT00000038521.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.470	UniProtKB/TrEMBL
	2.130.10.10	UniProtKB/TrEMBL
InterPro	WD40/YVTN_repeat-like_dom_sf	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Ift80	ENTREZGENE
PANTHER	INTRAFLAGELLAR TRANSPORT PROTEIN 80 HOMOLOG	UniProtKB/TrEMBL
	OUTER SEGMENT 5	UniProtKB/TrEMBL
Pfam	WD40	UniProtKB/TrEMBL
PROSITE	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50978	UniProtKB/TrEMBL
UniProt	A0A287DBW3	ENTREZGENE, UniProtKB/TrEMBL
	I3N5A5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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