F13b (coagulation factor XIII B chain) - Rat Genome Database

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Gene: F13b (coagulation factor XIII B chain) Rattus norvegicus
Analyze
Symbol: F13b
Name: coagulation factor XIII B chain
RGD ID: 1311668
Description: Predicted to be involved in blood coagulation, fibrin clot formation. Orthologous to human F13B (coagulation factor XIII B chain); PARTICIPATES IN acenocoumarol pharmacodynamics pathway; alteplase pharmacodynamics pathway; aminocaproic acid pharmacodynamics pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: coagulation factor XIII, B polypeptide; coagulation factor XIII, beta subunit; LOC289055
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81353,681,639 - 53,707,114 (+)NCBIGRCr8
mRatBN7.21351,130,908 - 51,156,383 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1351,130,920 - 51,156,381 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1353,730,358 - 53,753,759 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01355,018,290 - 55,041,691 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01352,293,853 - 52,323,690 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01356,598,891 - 56,623,132 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1356,598,957 - 56,623,124 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01361,616,993 - 61,641,168 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41352,867,851 - 52,889,426 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11352,881,574 - 52,902,300 (+)NCBI
Celera1351,393,593 - 51,416,193 (+)NCBICelera
Cytogenetic Map13q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
F13bRatFactor XIII, B Subunit, Deficiency Of  ISOF13B (Homo sapiens)10450738DNA:mutations:multiple:RGD 
1 to 9 of 9 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
F13bRatcholesteatoma  ISOF13B (Homo sapiens)8554872ClinVar Annotator: match by term: CholesteatomaClinVar 
F13bRatfactor XIII deficiency  ISOF13B (Homo sapiens)8554872ClinVar more ...ClinVarPMID:22353194 more ...
F13bRatFactor XIII, B Subunit, Deficiency Of  ISOF13B (Homo sapiens)8554872ClinVar Annotator: match by term: Factor XIII more ...ClinVarPMID:11313256 more ...
F13bRatgastrointestinal stromal tumor  ISOF13B (Homo sapiens)8554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
F13bRatgenetic disease  ISOF13B (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868
F13bRatparathyroid carcinoma  ISOF13B (Homo sapiens)8554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532
F13bRatretinitis pigmentosa 12  ISOF13B (Homo sapiens)8554872ClinVar Annotator: match by term: Retinitis pigmentosa 12ClinVarPMID:10508521 more ...
F13bRatthrombosis  ISOF13B (Homo sapiens)8554872ClinVar Annotator: match by term: ThrombusClinVarPMID:25741868
F13bRatVenous Thrombosis  ISOF13B (Homo sapiens)8554872ClinVar Annotator: match by term: Venous thrombosis and susceptibility toClinVarPMID:12456499 more ...
1 to 9 of 9 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
F13bRatfactor XIII deficiency  ISOF13B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:2334637
F13bRatFactor XIII, B Subunit, Deficiency Of  ISOF13B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
F13bRatVenous Thrombosis  ISOF13B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16241947
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
F13bRatFactor XIII, B Subunit, Deficiency Of  ISOF13B (Homo sapiens)7240710 OMIM 

1 to 20 of 76 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
F13bRat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of F13B mRNA]CTDPMID:31150632
F13bRat(1->4)-beta-D-glucan multiple interactionsISOF13b (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of F13B mRNACTDPMID:36331819
F13bRat1,1-dichloroethene decreases expressionISOF13b (Mus musculus)6480464vinylidene chloride results in decreased expression of F13B mRNACTDPMID:26682919
F13bRat17beta-estradiol decreases expressionISOF13B (Homo sapiens)6480464Estradiol results in decreased expression of F13B mRNACTDPMID:20106945
F13bRat17beta-estradiol decreases expressionISOF13b (Mus musculus)6480464Estradiol results in decreased expression of F13B mRNACTDPMID:39298647
F13bRat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of F13B mRNACTDPMID:32145629
F13bRat2,2',4,4'-Tetrabromodiphenyl ether increases expressionISOF13B (Homo sapiens)64804642 more ...CTDPMID:31675489
F13bRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of F13B mRNACTDPMID:21724226
F13bRat2,4,6-tribromophenol increases expressionISOF13B (Homo sapiens)64804642 more ...CTDPMID:31675489
F13bRat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISOF13b (Mus musculus)64804642 more ...CTDPMID:38648751
F13bRat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of F13B mRNACTDPMID:21346803
F13bRat2-palmitoylglycerol increases expressionISOF13B (Homo sapiens)64804642-palmitoylglycerol results in increased expression of F13B mRNACTDPMID:37199045
F13bRat3,3',5,5'-tetrabromobisphenol A increases expressionISOF13B (Homo sapiens)6480464tetrabromobisphenol A results in increased expression of F13B proteinCTDPMID:31675489
F13bRat3-chloropropane-1,2-diol increases expressionEXP 6480464alpha-Chlorohydrin results in increased expression of F13B mRNACTDPMID:28522335
F13bRat4,4'-sulfonyldiphenol decreases expressionISOF13b (Mus musculus)6480464bisphenol S results in decreased expression of F13B mRNACTDPMID:39298647
F13bRatacetamide decreases expressionEXP 6480464acetamide results in decreased expression of F13B mRNACTDPMID:31881176
F13bRataflatoxin B1 affects expressionISOF13B (Homo sapiens)6480464Aflatoxin B1 affects the expression of F13B proteinCTDPMID:20106945
F13bRataflatoxin B1 decreases methylationISOF13B (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of F13B geneCTDPMID:27153756
F13bRataflatoxin B1 decreases expressionISOF13B (Homo sapiens)6480464Aflatoxin B1 results in decreased expression of F13B mRNACTDPMID:22100608 and PMID:27153756
F13bRatbenzo[a]pyrene increases mutagenesisISOF13B (Homo sapiens)6480464Benzo(a)pyrene results in increased mutagenesis of F13B geneCTDPMID:25435355

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Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
F13bRatbiological_process  ND 159840703/2016:no relevant rat dataRGD 
F13bRatblood coagulation involved_inIEAUniProtKB:Q07968 and ensembl:ENSMUSP000000276151600115GO_REF:0000107EnsemblGO_REF:0000107
F13bRatblood coagulation involved_inISOF13b (Mus musculus)1624291MGI:5645820 PMID:18224415RGDPMID:18224415
F13bRatblood coagulation involved_inIBAMGI:88379 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
F13bRatblood coagulation, fibrin clot formation involved_inISOF13B (Homo sapiens)1624291 PMID:27363989RGDPMID:27363989
F13bRatblood coagulation, fibrin clot formation involved_inIEAUniProtKB:P05160 and ensembl:ENSP000003563821600115GO_REF:0000107EnsemblGO_REF:0000107
F13bRatblood coagulation, fibrin clot formation acts_upstream_of_or_withinISOF13b (Mus musculus)1624291MGI:5645817 PMID:18224415RGDPMID:18224415

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
F13bRatprotein binding enablesISOF13b (Mus musculus)1624291UniProtKB:Q8BH61 and PMID:18224415RGDPMID:18224415

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
F13bRatcoagulation cascade pathway   ISOF13B (Homo sapiens)11352259 RGD 

Imported Annotations - SMPDB

1 to 16 of 16 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
F13bRatacenocoumarol pharmacodynamics pathway  ISOF13B (Homo sapiens)10402751 SMPDBSMP:00269
F13bRatalteplase pharmacodynamics pathway  ISOF13B (Homo sapiens)10402751 SMPDBSMP:00280
F13bRataminocaproic acid pharmacodynamics pathway  ISOF13B (Homo sapiens)10402751 SMPDBSMP:00286
F13bRatanistreplase pharmacodynamics pathway  ISOF13B (Homo sapiens)10402751 SMPDBSMP:00281
F13bRataprotinin pharmacodynamics pathway  ISOF13B (Homo sapiens)10402751 SMPDBSMP:00288
F13bRatargatroban pharmacodynamics pathway  ISOF13B (Homo sapiens)10402751 SMPDBSMP:00276
F13bRatbivalirudin pharmacodynamics pathway  ISOF13B (Homo sapiens)10402751 SMPDBSMP:00277
F13bRatdicoumarol pharmacodynamics pathway  ISOF13B (Homo sapiens)10402751 SMPDBSMP:00656
F13bRatdicoumarol pharmacodynamics pathway  ISOF13B (Homo sapiens)10402751 SMPDBSMP:00270
F13bRatenoxaparin pharmacodynamics pathway  ISOF13B (Homo sapiens)10402751 SMPDBSMP:00272
F13bRatfondaparinux pharmacodynamics pathway  ISOF13B (Homo sapiens)10402751 SMPDBSMP:00273
F13bRatheparin pharmacodynamics pathway  ISOF13B (Homo sapiens)10402751 SMPDBSMP:00274
F13bRatphenindione pharmacodynamics pathway  ISOF13B (Homo sapiens)10402751 SMPDBSMP:00655
F13bRatreteplase pharmacodynamics pathway  ISOF13B (Homo sapiens)10402751 SMPDBSMP:00285
F13bRattranexamic acid pharmacodynamics pathway  ISOF13B (Homo sapiens)10402751 SMPDBSMP:00287
F13bRatwarfarin pharmacodynamics pathway   ISOF13B (Homo sapiens)10402751 SMPDBSMP:00268
1 to 16 of 16 rows

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
F13bRatcoagulation cascade pathway   IEA 6907045 KEGGrno:04610
F13bRatcomplement system pathway  IEA 6907045 KEGGrno:04610

1 to 11 of 11 rows
#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Mutations affecting disulphide bonds contribute to a fairly common prevalence of F13B gene defects: results of a genetic study in 14 families with factor XIII B deficiency. Ivaskevicius V, etal., Haemophilia. 2010 Jul 1;16(4):675-82. doi: 10.1111/j.1365-2516.2010.02207.x. Epub 2010 Mar 10.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Fibrinogen and fibrin structure and functions. Mosesson MW J Thromb Haemost. 2005 Aug;3(8):1894-904.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
1 to 11 of 11 rows
PMID:12477932   PMID:18224415  



F13b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81353,681,639 - 53,707,114 (+)NCBIGRCr8
mRatBN7.21351,130,908 - 51,156,383 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1351,130,920 - 51,156,381 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1353,730,358 - 53,753,759 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01355,018,290 - 55,041,691 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01352,293,853 - 52,323,690 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01356,598,891 - 56,623,132 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1356,598,957 - 56,623,124 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01361,616,993 - 61,641,168 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41352,867,851 - 52,889,426 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11352,881,574 - 52,902,300 (+)NCBI
Celera1351,393,593 - 51,416,193 (+)NCBICelera
Cytogenetic Map13q13NCBI
F13B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381197,038,741 - 197,067,260 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1197,038,741 - 197,067,260 (-)EnsemblGRCh38hg38GRCh38
GRCh371197,007,871 - 197,036,390 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361195,274,944 - 195,303,020 (-)NCBINCBI36Build 36hg18NCBI36
Build 341193,739,977 - 193,768,021NCBI
Celera1170,133,795 - 170,161,866 (-)NCBICelera
Cytogenetic Map1q31.3NCBI
HuRef1168,165,553 - 168,193,910 (-)NCBIHuRef
CHM1_11198,430,602 - 198,458,850 (-)NCBICHM1_1
T2T-CHM13v2.01196,300,565 - 196,329,084 (-)NCBIT2T-CHM13v2.0
F13b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391139,429,285 - 139,451,496 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1139,429,440 - 139,451,490 (+)EnsemblGRCm39 Ensembl
GRCm381139,501,547 - 139,523,758 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1139,501,702 - 139,523,752 (+)EnsemblGRCm38mm10GRCm38
MGSCv371141,398,284 - 141,420,333 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361141,318,138 - 141,340,167 (+)NCBIMGSCv36mm8
Celera1142,138,905 - 142,161,049 (+)NCBICelera
Cytogenetic Map1FNCBI
cM Map161.57NCBI
F13b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540633,632,144 - 33,660,535 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540633,633,911 - 33,660,506 (-)NCBIChiLan1.0ChiLan1.0
F13B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2152,319,904 - 52,348,993 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1152,289,056 - 52,318,146 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01172,623,336 - 172,651,945 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11176,938,155 - 176,965,609 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1176,937,158 - 176,965,773 (-)Ensemblpanpan1.1panPan2
F13B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.175,674,458 - 5,700,928 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl75,674,416 - 5,700,905 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha75,303,651 - 5,331,440 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.075,370,630 - 5,398,422 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl75,370,530 - 5,396,990 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.175,305,382 - 5,333,161 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.075,406,384 - 5,434,127 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.075,439,496 - 5,467,295 (+)NCBIUU_Cfam_GSD_1.0
F13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934477,477,966 - 77,500,748 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365676,712,666 - 6,735,539 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
F13B
(Sus scrofa - pig)		 No map positions available.
F13B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12532,357,540 - 32,390,349 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2532,357,993 - 32,389,973 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605533,265,712 - 33,296,197 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
F13b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247983,231,462 - 3,274,186 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247983,231,592 - 3,261,500 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in F13b
276 total Variants

Predicted Target Of
Summary Value
Count of predictions:172
Count of miRNA genes:126
Interacting mature miRNAs:133
Transcripts:ENSRNOT00000016944
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 33 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133466346187525369Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
6893344Cm79Cardiac mass QTL 791.50.04heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)134372077062022792Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134619797684753113Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat

1 to 10 of 33 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
2 8 10 32 82 81 59 17 59 1 143 39 22 35 38 22



Ensembl Acc Id: ENSRNOT00000016944   ⟹   ENSRNOP00000016944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1351,130,922 - 51,156,375 (+)Ensembl
Rnor_6.0 Ensembl1356,598,957 - 56,623,124 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000080335   ⟹   ENSRNOP00000075643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1356,598,979 - 56,622,782 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089913   ⟹   ENSRNOP00000075504
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1351,130,920 - 51,156,381 (+)Ensembl
Rnor_6.0 Ensembl1356,598,979 - 56,622,782 (+)Ensembl
RefSeq Acc Id: NM_001401310   ⟹   NP_001388239
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81353,681,639 - 53,707,114 (+)NCBI
mRatBN7.21351,130,908 - 51,156,383 (+)NCBI
Protein RefSeqs NP_001388239 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI60876 (Get FASTA)   NCBI Sequence Viewer  
  EDM09620 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016944
  ENSRNOP00000016944.8
  ENSRNOP00000075504.1
Ensembl Acc Id: ENSRNOP00000075643   ⟸   ENSRNOT00000080335
Ensembl Acc Id: ENSRNOP00000075504   ⟸   ENSRNOT00000089913
Ensembl Acc Id: ENSRNOP00000016944   ⟸   ENSRNOT00000016944
RefSeq Acc Id: NP_001388239   ⟸   NM_001401310
- Peptide Label: precursor
- UniProtKB: F6Q1N1 (UniProtKB/TrEMBL),   B1H260 (UniProtKB/TrEMBL),   A0A0G2KAS2 (UniProtKB/TrEMBL),   A6ICM7 (UniProtKB/TrEMBL)
Sushi

Name Modeler Protein Id AA Range Protein Structure
AF-B1H260-F1-model_v2 AlphaFold B1H260 1-661 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13698869
Promoter ID:EPDNEW_R9390
Type:initiation region
Name:F13b_1
Description:coagulation factor XIII B chain
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01356,598,943 - 56,599,003EPDNEW


1 to 25 of 25 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-18073 BioCyc
Ensembl Genes ENSRNOG00000012613 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016944 ENTREZGENE
  ENSRNOT00000016944.8 UniProtKB/TrEMBL
  ENSRNOT00000089913.2 UniProtKB/TrEMBL
Gene3D-CATH Complement Module, domain 1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7369453 IMAGE-MGC_LOAD
InterPro ComplSys_Reg/VirEntry_Med UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP UniProtKB/TrEMBL
MGC_CLONE MGC:188246 IMAGE-MGC_LOAD
NCBI Gene 289055 ENTREZGENE
PANTHER COAGULATION FACTOR XIII B CHAIN UniProtKB/TrEMBL
  COMPLEMENT FACTOR H-RELATED UniProtKB/TrEMBL
Pfam Sushi UniProtKB/TrEMBL
PhenoGen F13b PhenoGen
PROSITE SUSHI UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012613 RatGTEx
SMART CCP UniProtKB/TrEMBL
Superfamily-SCOP Complement_control_module UniProtKB/TrEMBL
UniProt A0A0G2KAS2 ENTREZGENE, UniProtKB/TrEMBL
  A6ICM7 ENTREZGENE, UniProtKB/TrEMBL
  B1H260 ENTREZGENE, UniProtKB/TrEMBL
  F6Q1N1 ENTREZGENE
UniProt Secondary F6Q1N1 UniProtKB/TrEMBL
1 to 25 of 25 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-20 F13b  coagulation factor XIII B chain  F13b  coagulation factor XIII, B polypeptide  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 F13b  coagulation factor XIII, B polypeptide  F13b  coagulation factor XIII, beta subunit   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 F13b  coagulation factor XIII, beta subunit   F13b_predicted  coagulation factor XIII, beta subunit (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 F13b_predicted  coagulation factor XIII, beta subunit (predicted)      Symbol and Name status set to approved 70820 APPROVED