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Gene: Zc3h6 (zinc finger CCCH type containing 6) Rattus norvegicus

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Symbol:

Zc3h6

Name:

zinc finger CCCH type containing 6

RGD ID:

1311061

Description:

Predicted to enable RNA binding activity and zinc ion binding activity. Predicted to be involved in negative regulation of DNA-templated transcription. Predicted to be active in nucleus. Orthologous to human ZC3H6 (zinc finger CCCH-type containing 6); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC311415; Zc3hdc6; zinc finger CCCH domain-containing protein 6; zinc finger CCCH type domain containing 6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	136,656,116 - 136,717,560 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	136,657,414 - 136,706,504 (+)	Ensembl				GRCr8
mRatBN7.2	3	116,203,466 - 116,254,186 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	116,204,197 - 116,253,282 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	120,101,061 - 120,150,173 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	128,696,635 - 128,745,747 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	126,357,125 - 126,406,227 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	121,497,709 - 121,554,131 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	121,499,195 - 121,551,433 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	129,127,650 - 129,127,947 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	3	128,460,344 - 128,514,482 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	3	115,030,342 - 115,079,289 (+)	NCBI		Celera
Cytogenetic Map	3	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

amitrole (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

copper atom (ISO)

copper(0) (ISO)

D-glucose (ISO)

dimethylarsinic acid (ISO)

dinophysistoxin 1 (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

flutamide (EXP)

FR900359 (ISO)

furan (EXP)

gentamycin (EXP)

glucose (ISO)

lead(0) (ISO)

leflunomide (ISO)

methamphetamine (EXP)

methimazole (EXP)

methyl methanesulfonate (ISO)

methylarsonic acid (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

okadaic acid (ISO)

panobinostat (ISO)

paracetamol (EXP)

pentanal (ISO)

phenethyl isothiocyanate (ISO)

phenylmercury acetate (ISO)

potassium dichromate (ISO)

quercetin (EXP,ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

sotorasib (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

testosterone (ISO)

tetraphene (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trametinib (ISO)

trichloroethene (EXP)

triphenyl phosphate (EXP,ISO)

trovafloxacin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of DNA-templated transcription (IEA)

negative regulation of DNA-templated transcription, elongation (IBA)

negative regulation of transcription by RNA polymerase II (IEA)

Cellular Component

nucleoplasm (IBA)

Molecular Function

DNA-binding transcription repressor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

RNA binding (IEA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Zc3h6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	136,656,116 - 136,717,560 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	136,657,414 - 136,706,504 (+)	Ensembl				GRCr8
mRatBN7.2	3	116,203,466 - 116,254,186 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	116,204,197 - 116,253,282 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	120,101,061 - 120,150,173 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	128,696,635 - 128,745,747 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	126,357,125 - 126,406,227 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	121,497,709 - 121,554,131 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	121,499,195 - 121,551,433 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	129,127,650 - 129,127,947 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	3	128,460,344 - 128,514,482 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	3	115,030,342 - 115,079,289 (+)	NCBI		Celera
Cytogenetic Map	3	q36	NCBI

ZC3H6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	112,275,597 - 112,340,059 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	112,275,597 - 112,340,059 (+)	Ensembl			hg38	GRCh38
GRCh37	2	113,033,174 - 113,097,636 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	112,749,649 - 112,814,111 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	112,783,893 - 112,808,055	NCBI
Celera	2	105,948,735 - 105,989,201 (-)	NCBI		Celera
Cytogenetic Map	2	q14.1	NCBI
HuRef	2	105,545,486 - 105,610,731 (+)	NCBI		HuRef
CHM1_1	2	113,037,319 - 113,101,748 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	112,702,473 - 112,766,918 (+)	NCBI		T2T-CHM13v2.0

Zc3h6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	128,809,285 - 128,860,483 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	128,809,322 - 128,860,483 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	128,967,402 - 129,018,563 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	128,967,402 - 129,018,563 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	128,793,138 - 128,844,299 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	128,693,620 - 128,710,004 (+)	NCBI		MGSCv36	mm8
Celera	2	130,195,282 - 130,246,471 (+)	NCBI		Celera
Cytogenetic Map	2	F1	NCBI
cM Map	2	62.63	NCBI

Zc3h6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	1,825,276 - 1,843,775 (-)	Ensembl
ChiLan1.0	NW_004955470	1,823,469 - 1,876,788 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZC3H6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	15,730,823 - 15,798,890 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	15,733,587 - 15,801,524 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	89,670,224 - 89,730,253 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	113,426,672 - 113,467,613 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	113,431,920 - 113,464,603 (+)	Ensembl			panPan2	panpan1.1

ZC3H6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	36,620,959 - 36,688,438 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	36,621,059 - 36,687,197 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	36,389,997 - 36,457,459 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	37,395,592 - 37,463,350 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	37,395,518 - 37,463,294 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	36,554,659 - 36,601,940 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	36,588,310 - 36,655,756 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	36,801,709 - 36,869,587 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zc3h6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	81,992,856 - 82,043,868 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936783	903,335 - 936,193 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936783	868,147 - 937,180 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZC3H6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	44,085,397 - 44,148,494 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	44,081,283 - 44,148,913 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	45,680,786 - 45,742,641 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZC3H6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	15,346,979 - 15,404,781 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	15,374,018 - 15,403,012 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666080	4,279,307 - 4,337,620 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zc3h6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	33,939 - 105,983 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624749	32,910 - 105,889 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Zc3h6
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	107,743,867 - 107,792,919 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zc3h6
1213 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	205
Count of miRNA genes:	141
Interacting mature miRNAs:	171
Transcripts:	ENSRNOT00000024322
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582233	Insul10	Insulin level QTL 10	5.4	0.0015	blood insulin amount (VT:0001560)	serum insulin level times blood glucose level (CMO:0002040)	3	133259579	178259579	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	96509147	141509147	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	133134628	178134628	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	104545086	149545086	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	93829559	138829559	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	112250810	157250810	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	96509147	141509147	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	117537367	162537367	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	125116475	170116475	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	110225882	155225882	Rat
1358204	Insglur1	Insulin/glucose ratio QTL 1	3.8		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	3	136091420	155634702	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	122395989	167395989	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	90755164	141509147	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	131036586	176036586	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	131036586	176036586	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	125814931	139636791	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	110634702	155634702	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	116188400	161188400	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	355	192	11	144	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000024322 ⟹ ENSRNOP00000024322

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	136,657,414 - 136,706,504 (+)	Ensembl
mRatBN7.2 Ensembl	3	116,204,197 - 116,253,282 (+)	Ensembl
Rnor_6.0 Ensembl	3	121,499,195 - 121,551,433 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108152 ⟹ ENSRNOP00000085850

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	136,657,414 - 136,681,452 (+)	Ensembl
mRatBN7.2 Ensembl	3	116,204,197 - 116,228,226 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000142167 ⟹ ENSRNOP00000102054

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	136,657,414 - 136,706,504 (+)	Ensembl

RefSeq Acc Id:

NM_001107772 ⟹ NP_001101242

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	136,657,414 - 136,706,504 (+)	NCBI
mRatBN7.2	3	116,204,197 - 116,253,282 (+)	NCBI
Rnor_6.0	3	121,499,195 - 121,551,433 (+)	NCBI
Rnor_5.0	3	129,127,650 - 129,127,947 (+)	NCBI
RGSC_v3.4	3	116,575,644 - 116,625,370 (+)	RGD
Celera	3	115,030,342 - 115,079,289 (+)	RGD

Sequence:

show sequence

GCCTGTTTCGGGTGCCGCCATGTTGGTGAGGAGAAATCACCGTTACGGCCACTGTCCAAATCCC
CGCGTCGCTGCACGCCGCCCGCCGGCTCCCACGCCTCAGCCTCCGGCGGCGAATACAGACTAGA
GCGGCTGCGCCGGCAGCGCGGGGCCGTTGCCCAGTCTTTGCAGTTAGAGCCCCATCTCTCTGGC
GTGGTTGTTAATAGACTGGAAAGTCTGTGTCTGTGTCGCTCACTAGTAACCGTGAGTTTTTACC
ACTTCGTCACCTGTCGGCGGCGGCCGGGAACAGGTGCCCGCAGGCGGCGCAGCGGTCCTCCCCG
CGTCCCGCCGCCGGCCTCCAGACCTGCCCTCCAGCCCCGCCCCGTTCTTGACCAAACATGACAG
ACTCTGAACATGCAGGGCACGACAGAGAAGATGGAGAATTAGAAGATGGAGAAATAGATGATGC
AGGATTTGAAGAAACACAAGATCATGAAGCAAAAGAGAATGAAAAGCAGAAAAATGAGAAAGCC
TACAGAAAATCAAGAAAAAAGCACAAGAAGGAAAGAGAAAAGAAAAAATCCAAAAGGAGGAAAC
ATGAGAAACATAAGCATAACTCTCCATCTGGTGATAGTTCCGACTATAGCCTGGATTCAGATGT
TGAACATATGCAAAGTTCCCATAAGAAAAGAACTAGCTTCTACAGGGATTATGATGTTCCATTT
TCTCAGCATAGACGTATATCAGGAAGTTACAGGACATCAAAGAAGAGTCAACATAACAAAAAAT
TTAACAGTAAAGAATATGCTGAGTCCAGTTTCTACAGTGATGACTACTTTGGTAACTACAGTGA
TGACAACTTTGGTAACTATAGTAACCAGGAAGGAGAAGAAGATTTCTCCAGTCAGCTGAAATAC
TATCGACAATCCCAGGAGCGCTCAGGGTCATCATTCTCTAAAGAATCAGGGAAGAAACTGAGAA
GTAGAGAAAGCCCACCAGGTACTGAATATCGGATTAAAAATTTTAATGTTAGTCATGGACATCT
TTTGCCGAGGAAAATCAGAAGAAAAGAGCACTGTGGGGCACGAGTCATTAAAGGGCCTCATGTC
TTTTCAGCAGTGGATGACTTTCAAGAGTACAGCAAACCGGGGAAAAAGTGGAAAGTCATGACTC
AGGAGTTTATTAACCAGCACACAGTGGAGCACAAAGGGAAACAGATCTGTAAATACTTCCTGGA
AGGGAGATGTATTAAGGGAGATCATTGTAAATTTAATCATGATGCAGAATTGGAGAAGAAAAAG
GAGGTCTGCAAATATTATTTACAGGGATATTGTACCAAAGGAGAGAACTGCATTTATATGCATA
GTGAATTTCCTTGCAAGTTCTATCATAGTGGAGCAAAGTGCTACCAAGGAGACAAGTGTAAGTT
TTCTCATGATGATCTGACTAAAGAAACAAAGAAACTTTTGGACAAAGTGCTGAATGCTGACGAA
GAACTTGTAAACGAAGACGAAAGAGAATTAGAAGAACTTAGAAAGCACGGCATAACTCCTCTCC
CCAAACCACCCCCAGGAGTCGGGCTCCTCCCAACCCCATCAGAGCATTTTCCCTTTTCTGATCC
TGAAGACGATTTTGAGACAGATCTTTCTGATGATACGAAGAAAATTCCATCTCTTTTTGAAATA
GTTGTAAAACCTACTGTGGATTTAGCACATAAAATTGGGAAGAAACCACCAGCATTTTACAACA
GTACCTCTCCACCAGGACCACAGTATGAGGAAAGCAGTCACTGTCCACAGCATATGTACAGTTC
TGAGTCAAGTCCAGGTCCTGGATCTAATATTCCTCAAGGAAGTGAGAGTCCTGTGAGACACCCA
GGCTCCCCTGGACACCACCCATGTATAGGACCTCCTGGTCCACCAATGCAAGAGAACCCACCTT
TGCTACCTGGTTCATCTGAAGTTGTAGGCCCTCATAGCCAAGCTGGAGGGCTTGTTCAGCTGGA
CACACTACCAAGTATGGGTGGAGCTTATCATTCCCCAGGCTTTCCAGGACACGTGATGAAAGTC
CCCAGAGAGAGTCACAGCTCTACAGCTTCATTGTACCAGCAAATGCCTAGTGAGGTACAGCTCA
GTGCCGACTCTGAGTGCCTGCAAGGCTCGGCTGAAGTTTACGATGATTACTACCCACAGAATGC
TGCACACAGCTTTCAACCACCCGATAACTCTGCTGATGAGATGTGGCATGAAGAATTTGCACAG
CAGCAGCCTCCCGGTGCTCATGACTCTCCTCACCTTGGGAGTGGGCCTGATACCAGCAGCACTT
TAACAAGTCACTGCCCTCTGCCTGCTTCAGGGCTCCCTCCTGCAGTGCAGAGAGCTCTTTTCAT
CCCATTGACTCAGAGATACCAAGAAGATGAAGAACCAGCTGGCACCCAGCCTCATAGAGCATCA
AGCAAGGAAGAAGACGACACAGTTAACTGGTATTCCAGTAGTGAAGAGGAAGAAGGAAGTGGTG
TCAAGTCAATACTGAGGACATTACAGAAACAAACGGGAACTCTAAGAAATCAGCAACACCCTCC
CACAGAGCTCAGCATTCCTACTGATCCAAGACTTGCTAAAGAGAAAAGGAAAGGAAATCAAGTG
GTTGACCCAAGACTCCGGACTGTCCCAAGGCAAGATATTAGAAAGCCGCATGAGTCTGTCCCAG
TGGATCTTAGACTTGTGTGGGATCCCAGGAAATTCAGAGGGAATGGAGGTGCTCCTGGGGGCTC
TTCAGCCACTGGAGCAAAGTTTGATTTGCGTCATACAAGTGCTGGTGCAAATCACAAACCCAAA
AGAAGAGATGATGATGATGAAGATACAGAAAGAGAACTGAGAGAAAAAGCCTTCTTAATACCTT
TGGATTCTTCACCTGGCGTAGTCCTCCAGGATCCAAGGTCACAGTTAAGACAATTCAGTCACAT
TAAAATGGACATTATTCTAAACAAACCCAACTTTGCAAAACACATTGTGTGGGCTCCAGAAGAC
TTACTTCCAGTACCTTTACCTAAACCTGATCCAGTATCTTCAATCAATTTACCTCTGCCCCCAC
TTATAGCTGACCAGAGGCTCAGTAGATTATGGAATACAAAAAGTGATCATCAGGGTACCCTTTC
CCTTGATCCAACTTCAGCAGCCAAAGCCAGAATGAGTCTAACACCCAGAGAGGGCTGCTTAGAG
CAGTCTGGAGATTTACACAGTTCAGGAGGTAAACTAGGAGATCCTAGGCTGCAAAAGAATTTTG
ATCCTAGGCTTCACAGACTGCCCAATACAGAGTCTCCTCAAGTGGCCATAAAGGACTCGCATTC
ATTGAGGAATGCTCTGCCCTTAGCCAGGTGGAACCCTGCTTTGTCACAGCCCTCAACAGCAGCA
CCTGTTACTGTTGCTCCTGTGACTCTTCCCTTGTATGCCTCCAAACTCTCTTCAGATGGCCTCC
CACCAGGAACTCCAAGTTCAGTTCTGAGTGGCATTAGTTTGTATGATCCTAGGGATAAGGGTTC
ATTGTCTGCAACAGAGCTGTCAACCATTTCTTCAGGAGAAAATACAGAGAACCAGAAAAAAAGT
GGTGTAAAAAATAGTGATAAAAACCAGCCTTCCCCTGGAGAAGTGATCCTTCCACAGAAAACTA
CTGCAGACATGAAAGTCCCTGTTGATGGGCCGGCTGATGTGCAGACAGATGTCCTCAGCAGTGC
TGATGGGGTTCAGGCCCCTGCTGTGCACAGTCTTCCTATTCAGGCCTTAACAGGCTTAATTGGA
CCTCCATACAGTGATCCGAGGCAGGCAAGAGAGCCAGGACAGGCAAGCCCCACCCCAGATGATG
ATCCTAGTAGAGAAACAGATGACAAGTCTCTGAAAGAGGTTTTTAAGACGTTTGATCCAACCGC
ATCACCGTTTTGTTAGCTGTTGTGTAACTAAGCTGTTCTCACGCTATCACAGTTCTCTGCTTTT
TTGTAACTTGTTTACCTCGATAGTTTATTTATTTTTTAAATTATAAACATTTTTCAGCTGCTAG
TATCAGAACCACATGAACTTATATCCTCTAAAGTCTGTGGTATTTTATATAATATTTTTATAAC
TTCAAGAGACTATAGTATAGAAAAACATGTTAGCTTTAGTAAAAGTATTTTTATTGTTAAAAGT
GAACCATCATGAACTCAACACTCAGCCTGAGTATATGCCAGTTGTCTTTCTTAATCATTGTTTA
GGTTAACAATTACCACTTTTATATGGTTGTTTAGTTTCAAGCAATATGATATACATTACTTTTG
AGAATCAGTATTTTAACTAGGATCCTTTCTGTCAGCACAAAACTGATTAGTGTGTAACGCCAAC
TGCTACATAAAATGCAAGGTGAAAACATTCAAAACCATAATTAGCTCAGCTCTTATTTCAGGGC
ATCAATTTATTAGCATTGGCAATACTGTCTGTGTACATGAAGCACTTGAATGTTGTATCTTTTA
AAAGTATTTTATTGTACACTATCATAGAAGCTGAAGGACTATAAATAAAATGTTTTGCTATAGT
AAAAAATTTCTAGGTTCTCTAACAGAACTTTTAAAATTTAAGTTTTCACATTAAATAGTTATGA
GTTTATTGCTGTATCACATTGTGATATTTATGTATTTCAGTGTTTTGTCTTTAGCAAATAGTTT
TTATCTCTTTCAAATGATGTTACTGCAATATTTGTGCTCATCATGACTGTGGCAATTTTTAACA
GAATTTTCAATGTGAGCCTGTAGTAATTATTATGCTGATAATGTTTTAAATGTCTAGATTATAT
ATTTTTCTTGCATAGCAAAAAAATAAAAATAAAAAATACAAAGACAAAAACTACCCCACTGAGA
TGGCAGGTATATTCCACTGTATATGGTTCCAATAAACAACATTTTAGATCTCACACAACTGGTT
CTATAACAGGGATCACCTATGTTTTAATTATTTAATGTCCCCATAGTTTAGAACTCTGACTAGA
AATTGTATTATGCATTCTTGTGTATTCACTGCAGTGCATAGGTAAAGGTACCTGTGTTTATAAT
GTAACTCAAACTCAGTGTTACACTGGTGCAGTCTCTTGAACCGCTGGTGACTGGTAGTGTTTGC
TGAGATGGCTCCAGTAAATCATTGAAAAAGAGAATTTGTTATGAGACAAAGGAAGCAAAAAGGC
CAGTCCTTGGTTAGAGAGAACTCTCACAGAAGCAATTTTCACAGTTCACAAAATGTTTTTGTTT
CTATTTGTTGTCTAAAATGGCTCTGGATAGCAGGGTAGAGTCAAAGATACTGTTTAAAGTCACA
TAAATAGAGACT

hide sequence

RefSeq Acc Id:

XM_008762235 ⟹ XP_008760457

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	136,656,116 - 136,717,560 (+)	NCBI
mRatBN7.2	3	116,216,571 - 116,254,186 (+)	NCBI
Rnor_6.0	3	121,514,285 - 121,554,131 (+)	NCBI

Sequence:

show sequence

GAACTGTATTAAAGGCTTGCAGAATTGGGAAGGTTGAGAAACACTGCTTTAAACAGTCATTAAA
CAGACAGAAGTGGAGTTAAGGGCAAATGATTCAGGTTACTTCATCTTAGTAGTAAAAAATCAGA
ATGGGGGAAGGCAGAATTATTGAGGCGCAATTGTCAAGTTATTGGAGTGCATTGCCATGTCCAG
TTCCTGAGCAGTTAGCTTCAGAATGAGGACAGGGGGCATCTGAGTCTGTAATTTACACAATAGC
TGATTACAGTTTTCTCCCCTTCCTTCCAATTTAGATATTTAAAAATCCCCCTTGATGGGAGTCT
GACCCAGAACTTGGCACATTCTTGGAAAGTTCTCTATCATAGTTATGTCCCAGACCTAAGACAT
TTAAATATAATGAAAAATATTTTAATTTGAATACATTCTTAGGTAAAGTAGAATTTTCTCCCTT
TGCTCTTTGCCCTTCCTCTCTACAGCTCCTTTCAGGTTCTCTCCTTCCAACCCCTTATCATGCC
CACTCTCAAGTTGTTAGATTCTTTTTCTTTGATTATTATTGTCACACAAACATATACGTGTATG
CACAAATGTTTACATAGCCATTTCTAGAAGAGACTGTTTCATACCCAGACATCTGGTTCTTACC
CAGTCTTTCCATTCCTTTTCCATCTAGTCTTGAAGAATATCTGCTGGGTCATAAGTGCAGGAGC
TGTTGGGGCAGGGCTCTCTGATCCATTGATCTCTGCTATGTACAGATGCAGTTTTCTATGGTGG
CCTTCATCATCTGAAAGAGATGTTTCTTTGATGAGGAGTGGTAACTACACTAACCCAGGAAAGG
TGTCTGGTGAACCAGAACCAAATACTTTAGCCTTTAAAAGAAAGTTTTGTTGAGATACATACAG
TTCAACTTCTTTAAGTGCATATACTGATTTTAAAGGTATTCAGGGCTACATAACCAGCACCACT
ATGTAATCATAACATTTTCACCATTCCACAGGAATTACCAATTCCTACTGGTAATTTCTTTTTA
TTTTCCCCTCTGATCTACCTGACAACCCCTAATTTTTTTCTGTCTTTGTGGATTTGTCTAAGAG
ATAAACTCTTAAAGACTGTACAGTCATTTATCAAGCTTTTATACATGAAATGCCATTTTGCTGG
AAATAACTTTATAATGCTAATTCTTTTATATCAGTAAGAAGTCACCTATGTATTTATTAATTTT
TAAAAATATTTTTTATTCTCTAGAGTATAATGGAATTACATTATTTCTCCCTCCCCTTTCCTGC
CTGAACCCCTCCCATCATGCTCCCTTTTCTCCGTCAAATCCTCATTAATTGTTGCTAGTGCTTG
TATGTATGTACATGTACATTCCTAAATGCAGCCTGCTCGGCCTGTTTAATGCTATTCATGTGTG
TGTTTTCAGGGCTGACCATTTGGTATTGGATAACCAATTAATTGGTGTGCTCTTCTCTGAGGAA
AAATTTCTCCTGCTCTCAGAATTCCTTAGTTATTTGTAGTTCTTTGGGATTTTCTCCATCAACT
TTGGCATGCCTGTTGTTATTCCTGTTCAGCTCATCTTTAGGCAATCATGTTGGTGAGAATTTAT
GGAGGAGACAGTCTCACAGAAACCCCCTGATTCTCTGGCTCGTACAGTCTTTCCTCCCCCTGTG
GAGCAATGTCTGCTGAGTTGTTTGAAGAGAAGATGGAGAATTAGAAGATGGAGAAATAGATGAT
GCAGGATTTGAAGAAACACAAGATCATGAAGCAAAAGAGAATGAAAAGCAGAAAAATGAGAAAG
CCTACAGAAAATCAAGAAAAAAGCACAAGAAGGAAAGAGAAAAGAAAAAATCCAAAAGGAGGAA
ACATGAGAAACATAAGCATAACTCTCCATCTGGTGATAGTTCCGACTATAGCCTGGATTCAGAT
GTTGAACATATGCAAAGTTCCCATAAGAAAAGAACTAGCTTCTACAGGGATTATGATGTTCCAT
TTTCTCAGACGTATATCAGGAAGTTACAGGACATCAAAGAAGAGTCAACATAACAAAAAATTTA
ACAGTAAAGAATATGCTGAGTCCAGTTTCTACAGTGATGACTACTTTGGTAACTACAGTGATGA
CAACTTTGGTAACTATAGTAACCAGGAAGGAGAAGAAGATTTCTCCAGTCAGCTGAAATACTAT
CGACAATCCCAGGAGCGCTCAGGGTCATCATTCTCTAAAGAATCAGGGAAGAAACTGAGAAGTA
GAGAAAGCCCACCAGGTACTGAATATCGGATTAAAAATTTTAATGTTAGTCATGGACATCTTTT
GCCGAGGAAAATCAGAAGAAAAGAGCACTGTGGGGCACGAGTCATTAAAGGGCCTCATGTCTTT
TCAGCAGTGGATGACTTTCAAGAGTACAGCAAACCGGGGAAAAAGTGGAAAGTCATGACTCAGG
AGTTTATTAACCAGCACACAGTGGAGCACAAAGGGAAACAGATCTGTAAATACTTCCTGGAAGG
GAGATGTATTAAGGGAGATCATTGTAAATTTAATCATGATGCAGAATTGGAGAAGAAAAAGGAG
GTCTGCAAATATTATTTACAGGGATATTGTACCAAAGGAGAGAACTGCATTTATATGCATAGTG
AATTTCCTTGCAAGTTCTATCATAGTGGAGCAAAGTGCTACCAAGGAGACAAGTGTAAGTTTTC
TCATGATGATCTGACTAAAGAAACAAAGAAACTTTTGGACAAAGTGCTGAATGCTGACGAAGAA
CTTGTAAACGAAGACGAAAGAGAATTAGAAGAACTTAGAAAGCACGGCATAACTCCTCTCCCCA
AACCACCCCCAGGAGTCGGGCTCCTCCCAACCCCATCAGAGCATTTTCCCTTTTCTGATCCTGA
AGACGATTTTGAGACAGATCTTTCTGATGATACGAAGAAAATTCCATCTCTTTTTGAAATAGTT
GTAAAACCTACTGTGGATTTAGCACATAAAATTGGGAAGAAACCACCAGCATTTTACAACAGTA
CCTCTCCACCAGGACCACAGTATGAGGAAAGCAGTCACTGTCCACAGCATATGTACAGTTCTGA
GTCAAGTCCAGGTCCTGGATCTAATATTCCTCAAGGAAGTGAGAGTCCTGTGAGACACCCAGGC
TCCCCTGGACACCACCCATGTATAGGACCTCCTGGTCCACCAATGCAAGAGAACCCACCTTTGC
TACCTGGTTCATCTGAAGTTGTAGGCCCTCATAGCCAAGCTGGAGGGCTTGTTCAGCTGGACAC
ACTACCAAGTATGGGTGGAGCTTATCATTCCCCAGGCTTTCCAGGACACGTGATGAAAGTCCCC
AGAGAGAGTCACAGCTCTACAGCTTCATTGTACCAGCAAATGCCTAGTGAGGTACAGCTCAGTG
CCGACTCTGAGTGCCTGCAAGGCTCGGCTGAAGTTTACGATGATTACTACCCACAGAATGCTGC
ACACAGCTTTCAACCACCCGATAACTCTGCTGATGAGATGTGGCATGAAGAATTTGCACAGCAG
CAGCCTCCCGGTGCTCATGACTCTCCTCACCTTGGGAGTGGGCCTGATACCAGCAGCACTTTAA
CAAGTCACTGCCCTCTGCCTGCTTCAGGGCTCCCTCCTGCAGTGCAGAGAGCTCTTTTCATCCC
ATTGACTCAGAGATACCAAGAAGATGAAGAACCAGCTGGCACCCAGCCTCATAGAGCATCAAGC
AAGGAAGAAGACGACACAGTTAACTGGTATTCCAGTAGTGAAGAGGAAGAAGGAAGTGGTGTCA
AGTCAATACTGAGGACATTACAGAAACAAACGGGAACTCTAAGAAATCAGCAACACCCTCCCAC
AGAGCTCAGCATTCCTACTGATCCAAGACTTGCTAAAGAGAAAAGGAAAGGAAATCAAGTGGTT
GACCCAAGACTCCGGACTGTCCCAAGGCAAGATATTAGAAAGCCGCATGAGTCTGTCCCAGTGG
ATCTTAGACTTGTGTGGGATCCCAGGAAATTCAGAGGGAATGGAGGTGCTCCTGGGGGCTCTTC
AGCCACTGGAGCAAAGTTTGATTTGCGTCATACAAGTGCTGGTGCAAATCACAAACCCAAAAGA
AGAGATGATGATGATGAAGATACAGAAAGAGAACTGAGAGAAAAAGCCTTCTTAATACCTTTGG
ATTCTTCACCTGGCGTAGTCCTCCAGGATCCAAGGTCACAGTTAAGACAATTCAGTCACATTAA
AATGGACATTATTCTAAACAAACCCAACTTTGCAAAACACATTGTGTGGGCTCCAGAAGACTTA
CTTCCAGTACCTTTACCTAAACCTGATCCAGTATCTTCAATCAATTTACCTCTGCCCCCACTTA
TAGCTGACCAGAGGCTCAGTAGATTATGGAATACAAAAAGTGATCATCAGGGTACCCTTTCCCT
TGATCCAACTTCAGCAGCCAAAGCCAGAATGAGTCTAACACCCAGAGAGGGCTGCTTAGAGCAG
TCTGGAGATTTACACAGTTCAGGAGGTAAACTAGGAGATCCTAGGCTGCAAAAGAATTTTGATC
CTAGGCTTCACAGACTGCCCAATACAGAGTCTCCTCAAGTGGCCATAAAGGACTCGCATTCATT
GAGGAATGCTCTGCCCTTAGCCAGGTGGAACCCTGCTTTGTCACAGCCCTCAACAGCAGCACCT
GTTACTGTTGCTCCTGTGACTCTTCCCTTGTATGCCTCCAAACTCTCTTCAGATGGCCTCCCAC
CAGGAACTCCAAGTTCAGTTCTGAGTGGCATTAGTTTGTATGATCCTAGGGATAAGGGTTCATT
GTCTGCAACAGAGCTGTCAACCATTTCTTCAGGAGAAAATACAGAGAACCAGAAAAAAAGTGGT
GTAAAAAATAGTGATAAAAACCAGCCTTCCCCTGGAGAAGTGATCCTTCCACAGAAAACTACTG
CAGACATGAAAGTCCCTGTTGATGGGCCGGCTGATGTGCAGACAGATGTCCTCAGCAGTGCTGA
TGGGGTTCAGGCCCCTGCTGTGCACAGTCTTCCTATTCAGGCCTTAACAGGCTTAATTGGACCT
CCATACAGTGATCCGAGGCAGGCAAGAGAGCCAGGACAGGCAAGCCCCACCCCAGATGATGATC
CTAGTAGAGAAACAGATGACAAGTCTCTGAAAGAGGTTTTTAAGACGTTTGATCCAACCGCATC
ACCGTTTTGTTAGCTGTTGTGTAACTAAGCTGTTCTCACGCTATCACAGTTCTCTGCTTTTTTG
TAACTTGTTTACCTCGATAGTTTATTTATTTTTTAAATTATAAACATTTTTCAGCTGCTAGTAT
CAGAACCACATGAACTTATATCCTCTAAAGTCTGTGGTATTTTATATAATATTTTTATAACTTC
AAGAGACTATAGTATAGAAAAACATGTTAGCTTTAGTAAAAGTATTTTTATTGTTAAAAGTGAA
CCATCATGAACTCAACACTCAGCCTGAGTATATGCCAGTTGTCTTTCTTAATCATTGTTTAGGT
TAACAATTACCACTTTTATATGGTTGTTTAGTTTCAAGCAATATGATATACATTACTTTTGAGA
ATCAGTATTTTAACTAGGATCCTTTCTGTCAGCACAAAACTGATTAGTGTGTAACGCCAACTGC
TACATAAAATGCAAGGTGAAAACATTCAAAACCATAATTAGCTCAGCTCTTATTTCAGGGCATC
AATTTATTAGCATTGGCAATACTGTCTGTGTACATGAAGCACTTGAATGTTGTATCTTTTAAAA
GTATTTTATTGTACACTATCATAGAAGCTGAAGGACTATAAATAAAATGTTTTGCTATAGTAAA
AAATTTCTAGGTTCTCTAACAGAACTTTTAAAATTTAAGTTTTCACATTAAATAGTTATGAGTT
TATTGCTGTATCACATTGTGATATTTATGTATTTCAGTGTTTTGTCTTTAGCAAATAGTTTTTA
TCTCTTTCAAATGATGTTACTGCAATATTTGTGCTCATCATGACTGTGGCAATTTTTAACAGAA
TTTTCAATGTGAGCCTGTAGTAATTATTATGCTGATAATGTTTTAAATGTCTAGATTATATATT
TTTCTTGCATAGCAAAAAAATAAAAATAAAAAATACAAAGACAAAAACTACCCCACTGAGATGG
CAGGTATATTCCACTGTATATGGTTCCAATAAACAACATTTTAGATCTCACACAACTGGTTCTA
TAACAGGGATCACCTATGTTTTAATTATTTAATGTCCCCATAGTTTAGAACTCTGACTAGAAAT
TGTATTATGCATTCTTGTGTATTCACTGCAGTGCATAGGTAAAGGTACCTGTGTTTATAATGTA
ACTCAAACTCAGTGTTACACTGGTGCAGTCTCTTGAACCGCTGGTGACTGGTAGTGTTTGCTGA
GATGGCTCCAGTAAATCATTGAAAAAGAGAATTTGTTATGAGACAAAGGAAGCAAAAAGGCCAG
TCCTTGGTTAGAGAGAACTCTCACAGAAGCAATTTTCACAGTTCACAAAATGTTTTTGTTTCTA
TTTGTTGTCTAAAATGGCTCTGGATAGCAGGGTAGAGTCAAAGATACTGTTTAAAGTCACATAA
ATAGAGACTCTCTCCTCACTGTTCAAGTGGACACTACTGTTAAACGAGAAGTCAATAAAGTAGA
TAAAACGGACAGAAAAAATGTAGTCCAAAGTAGTACACTTTTCTCTCTTATCAGAATTTAAAAA
AAAACAATAAAATAGCTAAATTTAAGTTAATCAAAAATTGTAACAAATTTTTAGTTCCACTCAT
GCATTTATCCTTATTGTTGAATTAGGAATACTTCTAACACTACAAGATAATTTGCCTTACACAA
AACTCTCAATGAAAGCTCTCTTTATAATAACTTCTAAACCCTACTTTTAAAAATTAATACCAGG
GGTTGAGGATTTAGCTCAGCAGTAGAGCGCTTGCCTAGCGAGCACAAGGCCGTGGGTTCGGTCC
CCAGCTCCGAAAAAAAGAAAAAAGAAAAAAAAATTAATTCCAATGATAGGATATTTGTTTACTC
ATTTCATTGTCATCGTTCCTTTTCTATTGTTGTGAAGAGGTTCCAGGACCAAGGCTACTTTTAC
AAAGTAAATCATTTAATTGGCTTGCTTAAATTTTGGAGGTTTAGCCCATTATCAGCCTGGTGGG
AAGTGTGGTCAGAGCATGGCAGGACTCAAGGCCTTGGAGCACATCCTGGTCCACAGGCCAAGAC
AGAGAAAGTGGGCTTGCTTGGCATGGGCTCTTGAAACCTCAAAGCCCATTCCCAGTGACCACAC
TTCTTCCAACAAGGCCAAAGCTCCTAACCCTCCTTATTCTTCTCCAATAATGCCACTCTGTGAT
GACAGAGCATTCAAATATATGAGCCAATGGAGGCCATTGTTCAAACCACCACACTTATTCATGG
GAGTGTCCTAACGTGTTTTGCAAACCAATTTTATCTCATAAACTGATACTACAGTTTATATTAA
AGCAATGTTTAAAATAATGCTTTTGACTTGCACCATTATTTGGGATTGAAATACTAGCTTAGGG
TATATTGTTCAGAACCTGTCAACATAGATTTCTTTAATCCCTCTTTCTGACTTTCTCACAAAAA
TGTAATAAATACCTACTTTTCCCAGTTAGTAAGCTCTTCATTAAGGTGGATTGGTGTAAAATAA
AGAAAACTTTCCCCAAAGGCTTAGATATTTGAATAGTCCCCAGTTGGAGCCACCAAACGTTTAG
GGGGAGGTTTGGGGAATGTGGCCTTGCTGGAAGAAATCATTTGTGGCTGCTGTGAGAGCAAACA
GCACGTACCTCCTTTCAGTTTGCCCATTTTATGCTTGTCTTTGAAGATAGGAACTCTCAGTTTC
TTACTTGCTTCTGTGACCATGCTTACCTGCCCTAATGGACTCTGACCCTCTGGAACCACAAGCC
AAAATAAACCCCTCCTTCTAGATAAGTTGTCCTGGCCCTGGACTTCCATCACAGTCACAAAAAA
GTAGCTAACAGTTGTTATTTTTAGAATTTATGGAATTTGGTGTCTTATTATTGCAGTAAAAAGT
TGCATCCTGTTCTTAGAAGCGACACTTTCACAGATGACAGAAACAGCTTGTATCTGAAAAGACT
GAGTGGGCTCCTCTGTTGCGATGCCACAGACCTTCATGGTGGGATCCACGTATTCACTTTGGTG
TTGAATAGAGTACAAATCAGGCCATAAAACTGGACCAGCATCAGACCATAAACTTGTCGACTAT
TTTGCTATATCTTGCTCAGGACTTTATTCTGAACTTTGAAAACAAACCAAATGTTGAAATGGTT
TCACATTCTATGTTATTGACTTCGTTTCTGTGTGGAACCTCCATGCTTCCCACCCTGCACTCCA
AACCCCAGAACTGGGCCACAGTGGAAGGAGCCACATTATGTGGTGATGTATGCTTAGGTTTTTG
TTTGTTTGTTTGTTTTGTTTTGTTCCTTTTAACTTTCTAGGACTTGAGACCTTAGCGCTCCTGA
TAGTCCTATTTATTTTAAAGGTGGGAGAACAGTTGAGTAGACAAACCTTTAAACTGATTAGTCA
CAGAACTAGAAGGACAGAGAAGTTTTGAATGACTCAAAGTTTAGAGACAATGAAGTCATTCTTT
TCTGATTGATTTCTAAACATCATCTCAATGTCTAATTCTTATCTGTGAGATATAAATAATTTCA
ATCGTTTAGAGATTTGAGGTAGGGAGGGAATCATTTTTGTAAAGTACTTATAAATACAAATTTG
CCTTGTGAATGTAAGTCACAGACACAATCTTACATTCCTATTAGGGCTACTAAGTTAAATAAAG
TTCCATAATAACCAGGCATGACCTGTTTGTTTTCCTAAGGTTATGAAGCTTTAGATGTGCACTG
TAACCATAAGAGGAAAGTTGCCTGAGGAGTTGTTTCAAAGAATTTTAACCCACTAGGTTAGCAA
GTGTTTAAATGTTAGTGTGTAAGAAACACAGAACTTTCAACTTGATTTGTAATTTGTCATAATG
ATCTGATCTGTCTGCTTTATACAGGATGGATGTTGATGGAAGCCACCAGTTGCTTTGCTGCTGG
GCCATGCTGTATGTCTGCTGAAATAGCCTGTGAGGGTGGAGTGGACGGACGTCTATTCAGTAGT
AAAGCCATTGGTGTTTAAAACAACAGAGAGACTGACTGAGGTGGGCACATGACCACACCGGTTA
CACATGAGTTACTCATGTAAATGTAAAGCATGTAAAGAAAAATTAATATATACTACTAATGCAT
TAAAAATACTAGCTCTTCA

hide sequence

RefSeq Acc Id:

XM_063283756 ⟹ XP_063139826

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	136,656,117 - 136,717,560 (+)	NCBI

RefSeq Acc Id:

XM_063283758 ⟹ XP_063139828

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	136,656,117 - 136,717,560 (+)	NCBI

RefSeq Acc Id:

XM_063283759 ⟹ XP_063139829

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	136,656,117 - 136,717,560 (+)	NCBI

RefSeq Acc Id:

XM_063283760 ⟹ XP_063139830

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	136,656,117 - 136,717,560 (+)	NCBI

RefSeq Acc Id:

XM_063283761 ⟹ XP_063139831

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	136,656,117 - 136,717,560 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101242	(Get FASTA)	NCBI Sequence Viewer
	XP_008760457	(Get FASTA)	NCBI Sequence Viewer
	XP_063139826	(Get FASTA)	NCBI Sequence Viewer
	XP_063139828	(Get FASTA)	NCBI Sequence Viewer
	XP_063139829	(Get FASTA)	NCBI Sequence Viewer
	XP_063139830	(Get FASTA)	NCBI Sequence Viewer
	XP_063139831	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL80144	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000024322
	ENSRNOP00000024322.6
	ENSRNOP00000085850.1
	ENSRNOP00000102054.1

RefSeq Acc Id:

NP_001101242 ⟸ NM_001107772

- UniProtKB:

F1LTU5 (UniProtKB/TrEMBL), A6HQ43 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTDSEHAGHDREDGELEDGEIDDAGFEETQDHEAKENEKQKNEKAYRKSRKKHKKEREKKKSKR
RKHEKHKHNSPSGDSSDYSLDSDVEHMQSSHKKRTSFYRDYDVPFSQHRRISGSYRTSKKSQHN
KKFNSKEYAESSFYSDDYFGNYSDDNFGNYSNQEGEEDFSSQLKYYRQSQERSGSSFSKESGKK
LRSRESPPGTEYRIKNFNVSHGHLLPRKIRRKEHCGARVIKGPHVFSAVDDFQEYSKPGKKWKV
MTQEFINQHTVEHKGKQICKYFLEGRCIKGDHCKFNHDAELEKKKEVCKYYLQGYCTKGENCIY
MHSEFPCKFYHSGAKCYQGDKCKFSHDDLTKETKKLLDKVLNADEELVNEDERELEELRKHGIT
PLPKPPPGVGLLPTPSEHFPFSDPEDDFETDLSDDTKKIPSLFEIVVKPTVDLAHKIGKKPPAF
YNSTSPPGPQYEESSHCPQHMYSSESSPGPGSNIPQGSESPVRHPGSPGHHPCIGPPGPPMQEN
PPLLPGSSEVVGPHSQAGGLVQLDTLPSMGGAYHSPGFPGHVMKVPRESHSSTASLYQQMPSEV
QLSADSECLQGSAEVYDDYYPQNAAHSFQPPDNSADEMWHEEFAQQQPPGAHDSPHLGSGPDTS
STLTSHCPLPASGLPPAVQRALFIPLTQRYQEDEEPAGTQPHRASSKEEDDTVNWYSSSEEEEG
SGVKSILRTLQKQTGTLRNQQHPPTELSIPTDPRLAKEKRKGNQVVDPRLRTVPRQDIRKPHES
VPVDLRLVWDPRKFRGNGGAPGGSSATGAKFDLRHTSAGANHKPKRRDDDDEDTERELREKAFL
IPLDSSPGVVLQDPRSQLRQFSHIKMDIILNKPNFAKHIVWAPEDLLPVPLPKPDPVSSINLPL
PPLIADQRLSRLWNTKSDHQGTLSLDPTSAAKARMSLTPREGCLEQSGDLHSSGGKLGDPRLQK
NFDPRLHRLPNTESPQVAIKDSHSLRNALPLARWNPALSQPSTAAPVTVAPVTLPLYASKLSSD
GLPPGTPSSVLSGISLYDPRDKGSLSATELSTISSGENTENQKKSGVKNSDKNQPSPGEVILPQ
KTTADMKVPVDGPADVQTDVLSSADGVQAPAVHSLPIQALTGLIGPPYSDPRQAREPGQASPTP
DDDPSRETDDKSLKEVFKTFDPTASPFC

hide sequence

RefSeq Acc Id:

XP_008760457 ⟸ XM_008762235

- Peptide Label:

isoform X2

- Sequence:

show sequence

MMQDLKKHKIMKQKRMKSRKMRKPTENQEKSTRRKEKRKNPKGGNMRNISITLHLVIVPTIAWI
QMLNICKVPIRKELASTGIMMFHFLRRISGSYRTSKKSQHNKKFNSKEYAESSFYSDDYFGNYS
DDNFGNYSNQEGEEDFSSQLKYYRQSQERSGSSFSKESGKKLRSRESPPGTEYRIKNFNVSHGH
LLPRKIRRKEHCGARVIKGPHVFSAVDDFQEYSKPGKKWKVMTQEFINQHTVEHKGKQICKYFL
EGRCIKGDHCKFNHDAELEKKKEVCKYYLQGYCTKGENCIYMHSEFPCKFYHSGAKCYQGDKCK
FSHDDLTKETKKLLDKVLNADEELVNEDERELEELRKHGITPLPKPPPGVGLLPTPSEHFPFSD
PEDDFETDLSDDTKKIPSLFEIVVKPTVDLAHKIGKKPPAFYNSTSPPGPQYEESSHCPQHMYS
SESSPGPGSNIPQGSESPVRHPGSPGHHPCIGPPGPPMQENPPLLPGSSEVVGPHSQAGGLVQL
DTLPSMGGAYHSPGFPGHVMKVPRESHSSTASLYQQMPSEVQLSADSECLQGSAEVYDDYYPQN
AAHSFQPPDNSADEMWHEEFAQQQPPGAHDSPHLGSGPDTSSTLTSHCPLPASGLPPAVQRALF
IPLTQRYQEDEEPAGTQPHRASSKEEDDTVNWYSSSEEEEGSGVKSILRTLQKQTGTLRNQQHP
PTELSIPTDPRLAKEKRKGNQVVDPRLRTVPRQDIRKPHESVPVDLRLVWDPRKFRGNGGAPGG
SSATGAKFDLRHTSAGANHKPKRRDDDDEDTERELREKAFLIPLDSSPGVVLQDPRSQLRQFSH
IKMDIILNKPNFAKHIVWAPEDLLPVPLPKPDPVSSINLPLPPLIADQRLSRLWNTKSDHQGTL
SLDPTSAAKARMSLTPREGCLEQSGDLHSSGGKLGDPRLQKNFDPRLHRLPNTESPQVAIKDSH
SLRNALPLARWNPALSQPSTAAPVTVAPVTLPLYASKLSSDGLPPGTPSSVLSGISLYDPRDKG
SLSATELSTISSGENTENQKKSGVKNSDKNQPSPGEVILPQKTTADMKVPVDGPADVQTDVLSS
ADGVQAPAVHSLPIQALTGLIGPPYSDPRQAREPGQASPTPDDDPSRETDDKSLKEVFKTFDPT
ASPFC

hide sequence

Ensembl Acc Id:

ENSRNOP00000024322 ⟸ ENSRNOT00000024322

Ensembl Acc Id:

ENSRNOP00000085850 ⟸ ENSRNOT00000108152

RefSeq Acc Id:	XP_063139828 ⟸ XM_063283758
- Peptide Label:	isoform X1
- UniProtKB:	A6HQ43 (UniProtKB/TrEMBL), F1LTU5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139826 ⟸ XM_063283756
- Peptide Label:	isoform X1
- UniProtKB:	A6HQ43 (UniProtKB/TrEMBL), F1LTU5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139829 ⟸ XM_063283759
- Peptide Label:	isoform X1
- UniProtKB:	A6HQ43 (UniProtKB/TrEMBL), F1LTU5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139830 ⟸ XM_063283760
- Peptide Label:	isoform X1
- UniProtKB:	A6HQ43 (UniProtKB/TrEMBL), F1LTU5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139831 ⟸ XM_063283761
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000102054 ⟸ ENSRNOT00000142167

Protein Domains

C3H1-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LTU5-F1-model_v2	AlphaFold	F1LTU5	1-1180	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692417

Promoter ID:

EPDNEW_R2942

Type:

initiation region

Name:

Zc3h6_1

Description:

zinc finger CCCH type containing 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	121,499,180 - 121,499,240	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311061	AgrOrtholog
BioCyc Gene	G2FUF-47929	BioCyc
Ensembl Genes	ENSRNOG00000026277	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000024322	ENTREZGENE
	ENSRNOT00000024322.7	UniProtKB/TrEMBL
	ENSRNOT00000108152.2	UniProtKB/TrEMBL
	ENSRNOT00000142167.1	UniProtKB/TrEMBL
Gene3D-CATH	Pneumovirus matrix protein 2 (M2), zinc-binding domain	UniProtKB/TrEMBL
	Zinc finger, CCCH-type	UniProtKB/TrEMBL
InterPro	Su(sable)-like	UniProtKB/TrEMBL
	Znf-CCCH_ZC3H4/6/8	UniProtKB/TrEMBL
	Znf_CCCH	UniProtKB/TrEMBL
	Znf_CCCH_sf	UniProtKB/TrEMBL
KEGG Report	rno:311415	UniProtKB/TrEMBL
NCBI Gene	311415	ENTREZGENE
PANTHER	PTHR13119	UniProtKB/TrEMBL
	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6	UniProtKB/TrEMBL
Pfam	zf-CCCH	UniProtKB/TrEMBL
	zf-CCCH_9	UniProtKB/TrEMBL
PhenoGen	Zc3h6	PhenoGen
PROSITE	ZF_C3H1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000026277	RatGTEx
SMART	ZnF_C3H1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF90229	UniProtKB/TrEMBL
UniProt	A0A8I6A4Y5_RAT	UniProtKB/TrEMBL
	A0ABK0LJJ8_RAT	UniProtKB/TrEMBL
	A6HQ43	ENTREZGENE, UniProtKB/TrEMBL
	F1LTU5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Zc3h6	zinc finger CCCH type containing 6	Zc3h6_predicted	zinc finger CCCH type containing 6 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Zc3h6_predicted	zinc finger CCCH type containing 6 (predicted)	Zc3hdc6_predicted	zinc finger CCCH type domain containing 6 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-12	Zc3hdc6_predicted	zinc finger CCCH type domain containing 6 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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