Zc3h6 (zinc finger CCCH-type containing 6) - Rat Genome Database

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Gene: Zc3h6 (zinc finger CCCH-type containing 6) Chinchilla lanigera
Analyze
Symbol: Zc3h6
Name: zinc finger CCCH-type containing 6
RGD ID: 8965634
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger CCCH domain-containing protein 6
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554701,825,276 - 1,843,775 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554701,823,469 - 1,876,788 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zc3h6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554701,825,276 - 1,843,775 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554701,823,469 - 1,876,788 (-)NCBIChiLan1.0ChiLan1.0
ZC3H6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382112,275,597 - 112,340,059 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2112,275,597 - 112,340,059 (+)EnsemblGRCh38hg38GRCh38
GRCh372113,033,174 - 113,097,636 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362112,749,649 - 112,814,111 (+)NCBINCBI36Build 36hg18NCBI36
Build 342112,783,893 - 112,808,055NCBI
Celera2105,948,735 - 105,989,201 (-)NCBICelera
Cytogenetic Map2q14.1NCBI
HuRef2105,545,486 - 105,610,731 (+)NCBIHuRef
CHM1_12113,037,319 - 113,101,748 (+)NCBICHM1_1
T2T-CHM13v2.02112,702,473 - 112,766,918 (+)NCBIT2T-CHM13v2.0
Zc3h6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392128,809,285 - 128,860,483 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2128,809,322 - 128,860,483 (+)EnsemblGRCm39 Ensembl
GRCm382128,967,402 - 129,018,563 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2128,967,402 - 129,018,563 (+)EnsemblGRCm38mm10GRCm38
MGSCv372128,793,138 - 128,844,299 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362128,693,620 - 128,710,004 (+)NCBIMGSCv36mm8
Celera2130,195,282 - 130,246,471 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map262.63NCBI
Zc3h6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83136,656,116 - 136,717,560 (+)NCBIGRCr8
mRatBN7.23116,203,466 - 116,254,186 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3116,204,197 - 116,253,282 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3120,101,061 - 120,150,173 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03128,696,635 - 128,745,747 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03126,357,125 - 126,406,227 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03121,497,709 - 121,554,131 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3121,499,195 - 121,551,433 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03129,127,650 - 129,127,947 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.03128,460,344 - 128,514,482 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3115,030,342 - 115,079,289 (+)NCBICelera
Cytogenetic Map3q36NCBI
ZC3H6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21215,730,823 - 15,798,890 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A15,733,587 - 15,801,524 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A89,670,224 - 89,730,253 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A113,426,672 - 113,467,613 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A113,431,920 - 113,464,603 (+)Ensemblpanpan1.1panPan2
ZC3H6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11736,620,959 - 36,688,438 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1736,621,059 - 36,687,197 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1736,389,997 - 36,457,459 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01737,395,592 - 37,463,350 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1737,395,518 - 37,463,294 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11736,554,659 - 36,601,940 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01736,588,310 - 36,655,756 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01736,801,709 - 36,869,587 (+)NCBIUU_Cfam_GSD_1.0
Zc3h6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629281,992,856 - 82,043,868 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936783903,335 - 936,193 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936783868,147 - 937,180 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZC3H6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl344,085,397 - 44,148,494 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1344,081,283 - 44,148,913 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2345,680,786 - 45,742,641 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZC3H6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11415,346,979 - 15,404,781 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1415,374,018 - 15,403,012 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660804,279,307 - 4,337,620 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zc3h6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474933,939 - 105,983 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474932,910 - 105,889 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000009647   ⟹   ENSCLAP00000009518
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554701,825,276 - 1,843,775 (-)Ensembl
RefSeq Acc Id: XM_013522790   ⟹   XP_013378244
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554701,823,469 - 1,876,788 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013378244 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000009518
  ENSCLAP00000009518.1
RefSeq Acc Id: XP_013378244   ⟸   XM_013522790
- UniProtKB: A0A8C2V3N9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000009518   ⟸   ENSCLAT00000009647
Protein Domains
C3H1-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006605 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000009647 ENTREZGENE
  ENSCLAT00000009647.1 UniProtKB/TrEMBL
Gene3D-CATH Pneumovirus matrix protein 2 (M2), zinc-binding domain UniProtKB/TrEMBL
  Zinc finger, CCCH-type UniProtKB/TrEMBL
InterPro Su(sable)-like UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/TrEMBL
  Znf_CCCH_sf UniProtKB/TrEMBL
NCBI Gene Zc3h6 ENTREZGENE
PANTHER PTHR13119 UniProtKB/TrEMBL
  ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6 UniProtKB/TrEMBL
Pfam zf-CCCH UniProtKB/TrEMBL
  zf-CCCH_2 UniProtKB/TrEMBL
  zf_CCCH_4 UniProtKB/TrEMBL
PROSITE ZF_C3H1 UniProtKB/TrEMBL
SMART ZnF_C3H1 UniProtKB/TrEMBL
Superfamily-SCOP SSF90229 UniProtKB/TrEMBL
UniProt A0A8C2V3N9 ENTREZGENE, UniProtKB/TrEMBL