Gmds (GDP-mannose 4, 6-dehydratase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: Gmds (GDP-mannose 4, 6-dehydratase) Rattus norvegicus
Analyze
Symbol: Gmds
Name: GDP-mannose 4, 6-dehydratase
RGD ID: 1311008
Description: Predicted to enable GDP-mannose 4,6-dehydratase activity; NADP+ binding activity; and identical protein binding activity. Predicted to be involved in 'de novo' GDP-L-fucose biosynthetic process and Notch signaling pathway. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in open-angle glaucoma. Orthologous to human GMDS (GDP-mannose 4,6-dehydratase); PARTICIPATES IN fructose and mannose metabolic pathway; fructosuria pathway; hereditary fructose intolerance syndrome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GDP-mannose 4,6 dehydratase; GDP-mannose 4,6-dehydratase; LOC291095; MGC125154
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81732,304,029 - 32,830,708 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1732,304,056 - 32,830,706 (+)EnsemblGRCr8
mRatBN7.21732,095,315 - 32,621,975 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1732,095,386 - 32,621,961 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1731,943,309 - 32,469,749 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01733,547,114 - 34,073,564 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01731,939,117 - 32,465,571 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01733,408,722 - 33,938,086 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1733,408,722 - 33,938,085 (+)Ensemblrn6Rnor6.0
Rnor_5.01735,298,853 - 35,824,292 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41738,461,733 - 39,016,771 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1731,657,264 - 32,181,220 (+)NCBICelera
Cytogenetic Map17p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-methylcholine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
atrazine  (EXP)
Azoxymethane  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (EXP,ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diazinon  (ISO)
dichloroacetic acid  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
enzalutamide  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethyl methanesulfonate  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
furan  (EXP)
GDP  (ISO)
genistein  (ISO)
guanosine 5'-[beta,gamma-imido]triphosphate  (ISO)
guanosine 5'-monophosphate  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-nitrosodiethylamine  (EXP)
N-Nitrosopyrrolidine  (ISO)
NADP zwitterion  (ISO)
NADP(+)  (ISO)
O-methyleugenol  (ISO)
ochratoxin A  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sulforaphane  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (ISO)
Triptolide  (EXP)
valproic acid  (ISO)
vancomycin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Common variants near ABCA1, AFAP1 and GMDS confer risk of primary open-angle glaucoma. Gharahkhani P, etal., Nat Genet. 2014 Oct;46(10):1120-1125. doi: 10.1038/ng.3079. Epub 2014 Aug 31.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9525924   PMID:9603974   PMID:12477932   PMID:16189514   PMID:19199708   PMID:25416956   PMID:31515488  


Genomics

Comparative Map Data
Gmds
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81732,304,029 - 32,830,708 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1732,304,056 - 32,830,706 (+)EnsemblGRCr8
mRatBN7.21732,095,315 - 32,621,975 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1732,095,386 - 32,621,961 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1731,943,309 - 32,469,749 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01733,547,114 - 34,073,564 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01731,939,117 - 32,465,571 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01733,408,722 - 33,938,086 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1733,408,722 - 33,938,085 (+)Ensemblrn6Rnor6.0
Rnor_5.01735,298,853 - 35,824,292 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41738,461,733 - 39,016,771 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1731,657,264 - 32,181,220 (+)NCBICelera
Cytogenetic Map17p12NCBI
GMDS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3861,623,806 - 2,245,605 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl61,623,793 - 2,245,702 (-)Ensemblhg38GRCh38
GRCh3761,624,041 - 2,245,839 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3661,569,040 - 2,190,845 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3461,569,040 - 2,190,845NCBI
Celera62,852,269 - 3,473,926 (-)NCBICelera
Cytogenetic Map6p25.3NCBI
HuRef61,493,473 - 2,117,107 (-)NCBIHuRef
CHM1_161,625,952 - 2,247,981 (-)NCBICHM1_1
T2T-CHM13v2.061,486,810 - 2,109,239 (-)NCBIT2T-CHM13v2.0
Gmds
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391332,003,566 - 32,522,744 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1332,003,562 - 32,522,723 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381331,819,583 - 32,338,762 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1331,819,579 - 32,338,740 (-)Ensemblmm10GRCm38
MGSCv371331,911,455 - 32,430,413 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361331,827,051 - 32,346,009 (-)NCBIMGSCv36mm8
Celera1332,029,445 - 32,552,254 (-)NCBICelera
Cytogenetic Map13A3.2NCBI
cM Map1313.52NCBI
Gmds
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546511,145,837 - 11,563,352 (+)Ensembl
ChiLan1.0NW_00495546511,133,513 - 11,562,562 (+)NCBIChiLan1.0ChiLan1.0
GMDS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2516,178,749 - 16,875,792 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1612,234,431 - 12,866,878 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v061,443,129 - 2,071,856 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.161,559,444 - 2,178,324 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl61,556,227 - 2,178,330 (-)EnsemblpanPan2panpan1.1
GMDS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1352,108,459 - 2,519,902 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl352,151,528 - 2,519,513 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha352,079,228 - 2,654,331 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0352,025,524 - 2,554,965 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl352,024,713 - 2,601,732 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1352,000,500 - 2,575,207 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0352,021,716 - 2,596,616 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0353,357,422 - 3,932,361 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gmds
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494623,253,265 - 23,867,993 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366332,752,443 - 3,367,443 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366332,752,677 - 3,367,408 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GMDS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7752,592 - 1,285,550 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.17849,088 - 1,285,563 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.271,047,471 - 1,386,586 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GMDS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11769,899,089 - 70,523,126 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660441,566,497 - 2,196,283 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gmds
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475622,504,499 - 23,051,938 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475622,504,483 - 23,051,215 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Gmds
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11450,852,374 - 51,374,688 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Gmds
1785 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:280
Count of miRNA genes:172
Interacting mature miRNAs:195
Transcripts:ENSRNOT00000023691
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17143999106Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17926675540968173Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)173006647275066472Rat
8552966Pigfal18Plasma insulin-like growth factor 1 level QTL 188.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)171286094257860942Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172413612784432719Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17212084342054133Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172266079955604694Rat
9589151Insul30Insulin level QTL 308.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)171286094257860942Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173219953449497050Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172149899450592236Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172723344583975845Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17473353449733534Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172328632264246472Rat
9589057Scfw6Subcutaneous fat weight QTL 68.620.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)171286094257860942Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)172652205171522051Rat
9590154Scort9Serum corticosterone level QTL 923.570.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)171286094257860942Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172201970567019705Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172439059584432719Rat
9590088Insglur7Insulin/glucose ratio QTL 720.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)171286094257860942Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173219953455604694Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)171060469455604694Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17136045694Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171553702560531414Rat
7411666Foco31Food consumption QTL 3111.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)171286094257860942Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17473353449733534Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172385892668858926Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172385892668858926Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172723344565155015Rat
4889891Eae32Experimental allergic encephalomyelitis QTL 324.80.0002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)172723344572233445Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172385892668858926Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17138037084Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172385892668858926Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172385892668858926Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17143999106Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172413612784432719Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173219953486201342Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17143999106Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2413612784432719Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172413612784432719Rat

Markers in Region
D17Rat155  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21732,131,636 - 32,131,780 (+)MAPPERmRatBN7.2
Rnor_6.01733,444,804 - 33,444,947NCBIRnor6.0
Rnor_5.01735,334,935 - 35,335,078UniSTSRnor5.0
RGSC_v3.41738,497,648 - 38,497,792RGDRGSC3.4
RGSC_v3.41738,497,649 - 38,497,792UniSTSRGSC3.4
Celera1731,693,380 - 31,693,523UniSTS
RGSC_v3.11738,500,489 - 38,500,633RGD
FHH x ACI Map1730.0699RGD
FHH x ACI Map1730.0699UniSTS
Cytogenetic Map17p12UniSTS
D17Rat178  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81732,817,671 - 32,817,876 (+)Marker Load Pipeline
mRatBN7.21732,608,930 - 32,609,135 (+)MAPPERmRatBN7.2
Rnor_6.01733,925,056 - 33,925,258NCBIRnor6.0
Rnor_5.01735,811,262 - 35,811,464UniSTSRnor5.0
RGSC_v3.41739,003,740 - 39,003,943RGDRGSC3.4
RGSC_v3.41739,003,741 - 39,003,943UniSTSRGSC3.4
Celera1732,168,190 - 32,168,392UniSTS
RGSC_v3.11739,006,581 - 39,006,784RGD
FHH x ACI Map1730.0699UniSTS
FHH x ACI Map1730.0699RGD
Cytogenetic Map17p12UniSTS
BF387292  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21732,480,827 - 32,480,977 (+)MAPPERmRatBN7.2
Rnor_6.01733,797,923 - 33,798,072NCBIRnor6.0
Rnor_5.01735,684,038 - 35,684,187UniSTSRnor5.0
RGSC_v3.41738,872,423 - 38,872,572UniSTSRGSC3.4
Celera1732,040,820 - 32,040,969UniSTS
RH 3.4 Map17376.51UniSTS
Cytogenetic Map17p12UniSTS
D13Cwr18  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21732,532,340 - 32,532,608 (+)MAPPERmRatBN7.2
Rnor_6.01733,849,161 - 33,849,428NCBIRnor6.0
Rnor_5.01735,735,081 - 35,735,348UniSTSRnor5.0
RGSC_v3.41738,924,858 - 38,925,125UniSTSRGSC3.4
Celera1732,092,330 - 32,092,597UniSTS
Cytogenetic Map17p12UniSTS
RH143469  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21732,551,417 - 32,551,621 (+)MAPPERmRatBN7.2
Rnor_6.01733,867,392 - 33,867,595NCBIRnor6.0
Rnor_5.01735,753,598 - 35,753,801UniSTSRnor5.0
RGSC_v3.41738,946,230 - 38,946,433UniSTSRGSC3.4
Celera1732,110,826 - 32,111,029UniSTS
RH 3.4 Map17374.3UniSTS
Cytogenetic Map17p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000023691   ⟹   ENSRNOP00000023691
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1732,304,056 - 32,830,706 (+)Ensembl
mRatBN7.2 Ensembl1732,095,396 - 32,621,961 (+)Ensembl
Rnor_6.0 Ensembl1733,408,722 - 33,938,085 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104164   ⟹   ENSRNOP00000078985
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1732,427,588 - 32,830,706 (+)Ensembl
mRatBN7.2 Ensembl1732,095,386 - 32,527,914 (+)Ensembl
RefSeq Acc Id: NM_001039606   ⟹   NP_001034695
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81732,304,274 - 32,830,704 (+)NCBI
mRatBN7.21732,095,517 - 32,621,964 (+)NCBI
Rnor_6.01733,408,722 - 33,938,086 (+)NCBI
Rnor_5.01735,298,853 - 35,824,292 (+)NCBI
RGSC_v3.41738,461,733 - 39,016,771 (+)RGD
Celera1731,657,264 - 32,181,220 (+)RGD
Sequence:
RefSeq Acc Id: XM_039095494   ⟹   XP_038951422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81732,304,071 - 32,830,708 (+)NCBI
mRatBN7.21732,095,321 - 32,621,975 (+)NCBI
RefSeq Acc Id: XM_039095495   ⟹   XP_038951423
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81732,357,551 - 32,830,708 (+)NCBI
mRatBN7.21732,148,801 - 32,621,975 (+)NCBI
RefSeq Acc Id: XM_039095496   ⟹   XP_038951424
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81732,498,642 - 32,830,708 (+)NCBI
mRatBN7.21732,289,740 - 32,621,975 (+)NCBI
RefSeq Acc Id: XM_063276183   ⟹   XP_063132253
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81732,304,029 - 32,741,019 (+)NCBI
RefSeq Acc Id: NP_001034695   ⟸   NM_001039606
- UniProtKB: Q3MHS7 (UniProtKB/TrEMBL),   F7FFK9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000023691   ⟸   ENSRNOT00000023691
RefSeq Acc Id: XP_038951422   ⟸   XM_039095494
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038951423   ⟸   XM_039095495
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038951424   ⟸   XM_039095496
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000078985   ⟸   ENSRNOT00000104164
RefSeq Acc Id: XP_063132253   ⟸   XM_063276183
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZPV8 (UniProtKB/TrEMBL)
Protein Domains
NAD(P)-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3MHS7-F1-model_v2 AlphaFold Q3MHS7 1-372 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311008 AgrOrtholog
BioCyc Gene G2FUF-9561 BioCyc
BioCyc Pathway PWY-66 [GDP-L-fucose biosynthesis I (from GDP-D-mannose)] BioCyc
BioCyc Pathway Image PWY-66 BioCyc
Ensembl Genes ENSRNOG00000017605 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023691 ENTREZGENE
  ENSRNOT00000023691.7 UniProtKB/TrEMBL
  ENSRNOT00000104164.2 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
  UDP-galactose 4-epimerase, domain 1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7317156 IMAGE-MGC_LOAD
InterPro GDP_Man_deHydtase UniProtKB/TrEMBL
  NAD(P)-bd_dom UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
KEGG Report rno:291095 UniProtKB/TrEMBL
MGC_CLONE MGC:125154 IMAGE-MGC_LOAD
NCBI Gene 291095 ENTREZGENE
PANTHER GDP-MANNOSE 4,6 DEHYDRATASE UniProtKB/TrEMBL
  PTHR43715 UniProtKB/TrEMBL
Pfam GDP_Man_Dehyd UniProtKB/TrEMBL
PhenoGen Gmds PhenoGen
RatGTEx ENSRNOG00000017605 RatGTEx
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0A8I5ZPV8 ENTREZGENE, UniProtKB/TrEMBL
  F7FFK9 ENTREZGENE, UniProtKB/TrEMBL
  Q3MHS7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-07 Gmds  GDP-mannose 4, 6-dehydratase  Gmds_predicted  GDP-mannose 4, 6-dehydratase (predicted)  Symbol and Name status set to approved 1299863 APPROVED
2005-01-12 Gmds_predicted  GDP-mannose 4, 6-dehydratase (predicted)      Symbol and Name status set to approved 70820 APPROVED