Terf2 (telomeric repeat binding factor 2) - Rat Genome Database

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Gene: Terf2 (telomeric repeat binding factor 2) Rattus norvegicus
Analyze
Symbol: Terf2
Name: telomeric repeat binding factor 2
RGD ID: 1310881
Description: Predicted to enable enzyme binding activity; protein homodimerization activity; and telomeric DNA binding activity. Predicted to contribute to telomerase activity. Involved in axonal transport of messenger ribonucleoprotein complex. Predicted to be located in male germ cell nucleus. Predicted to be part of shelterin complex. Predicted to be active in chromosome, telomeric region. Orthologous to human TERF2 (telomeric repeat binding factor 2); INTERACTS WITH (+)-schisandrin B; (-)-epigallocatechin 3-gallate; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC361403; telomeric repeat-binding factor 2; Trf2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81951,887,221 - 51,915,756 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1951,887,221 - 51,915,566 (-)EnsemblGRCr8
mRatBN7.21934,976,963 - 35,005,813 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1934,977,471 - 35,005,819 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1941,792,949 - 41,821,176 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01942,446,296 - 42,474,523 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01944,745,934 - 44,774,149 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01939,271,992 - 39,301,506 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1939,272,499 - 39,300,893 (-)Ensemblrn6Rnor6.0
Rnor_5.01950,136,319 - 50,165,159 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41936,930,490 - 36,958,589 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1934,401,104 - 34,429,331 (-)NCBICelera
RGSC_v3.11936,935,821 - 36,963,550 (-)NCBI
Cytogenetic Map19q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (EXP)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
5-fluorouracil  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
carvedilol  (EXP)
chlorpyrifos  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
decabromodiphenyl ether  (EXP)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dimethyl sulfoxide  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
EUK-8  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
isocyanates  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
nitrates  (ISO)
paraquat  (ISO)
pazopanib  (ISO)
phenol  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
quercetin  (EXP)
rac-lactic acid  (ISO)
sodium arsenate  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vanadyl sulfate  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Novel RNA- and FMRP-binding protein TRF2-S regulates axonal mRNA transport and presynaptic plasticity. Zhang P, etal., Nat Commun. 2015 Nov 20;6:8888. doi: 10.1038/ncomms9888.
Additional References at PubMed
PMID:9326950   PMID:10338214   PMID:10888888   PMID:11927518   PMID:11971978   PMID:12181313   PMID:12477932   PMID:12768206   PMID:14690602   PMID:15010310   PMID:15109494   PMID:15181449  
PMID:15200954   PMID:15383534   PMID:15507207   PMID:15657433   PMID:15968270   PMID:16880378   PMID:17055345   PMID:17499040   PMID:17694070   PMID:17696610   PMID:18812185   PMID:19135898  
PMID:19801496   PMID:19854130   PMID:19864690   PMID:20479256   PMID:20619712   PMID:20655466   PMID:21852327   PMID:21903926   PMID:22039056   PMID:22536324   PMID:23685356   PMID:24012755  
PMID:24095731   PMID:24120135   PMID:24270157   PMID:27117401  


Genomics

Comparative Map Data
Terf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81951,887,221 - 51,915,756 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1951,887,221 - 51,915,566 (-)EnsemblGRCr8
mRatBN7.21934,976,963 - 35,005,813 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1934,977,471 - 35,005,819 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1941,792,949 - 41,821,176 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01942,446,296 - 42,474,523 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01944,745,934 - 44,774,149 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01939,271,992 - 39,301,506 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1939,272,499 - 39,300,893 (-)Ensemblrn6Rnor6.0
Rnor_5.01950,136,319 - 50,165,159 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41936,930,490 - 36,958,589 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1934,401,104 - 34,429,331 (-)NCBICelera
RGSC_v3.11936,935,821 - 36,963,550 (-)NCBI
Cytogenetic Map19q12NCBI
TERF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381669,355,567 - 69,386,007 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1669,355,464 - 69,408,571 (-)Ensemblhg38GRCh38
GRCh371669,389,470 - 69,419,910 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361667,947,032 - 67,977,374 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341667,947,035 - 67,977,374NCBI
Celera1653,904,070 - 53,934,402 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1655,267,237 - 55,298,105 (-)NCBIHuRef
CHM1_11670,797,479 - 70,827,880 (-)NCBICHM1_1
T2T-CHM13v2.01675,157,261 - 75,188,141 (-)NCBIT2T-CHM13v2.0
Terf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398107,796,032 - 107,823,180 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8107,796,032 - 107,823,179 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm388107,069,400 - 107,096,548 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8107,069,400 - 107,096,547 (-)Ensemblmm10GRCm38
MGSCv378109,593,302 - 109,620,445 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368109,959,033 - 109,985,558 (-)NCBIMGSCv36mm8
Celera8111,295,694 - 111,322,833 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.59NCBI
Terf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554847,318,860 - 7,347,430 (+)Ensembl
ChiLan1.0NW_0049554847,318,813 - 7,344,221 (+)NCBIChiLan1.0ChiLan1.0
TERF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21878,900,039 - 78,933,141 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11684,811,673 - 84,844,776 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01649,729,906 - 49,763,002 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11669,115,208 - 69,148,175 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1669,116,539 - 69,148,423 (-)EnsemblpanPan2panpan1.1
TERF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1580,278,224 - 80,305,315 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl580,277,505 - 80,306,342 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha580,268,753 - 80,295,630 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0580,712,130 - 80,739,229 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl580,711,877 - 80,739,196 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1580,539,324 - 80,566,375 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0580,222,161 - 80,249,209 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0580,861,710 - 80,888,804 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Terf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934940,090,640 - 40,119,506 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647519,468,702 - 19,498,793 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647519,469,501 - 19,498,494 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TERF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl617,605,763 - 17,631,721 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1617,605,748 - 17,631,795 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2616,552,399 - 16,578,508 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TERF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1558,019,422 - 58,051,819 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl558,019,468 - 58,050,802 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604720,749,467 - 20,781,837 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Terf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474616,992,110 - 17,019,857 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474616,992,049 - 17,020,809 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Terf2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11726,797,709 - 26,825,711 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Terf2
334 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:72
Count of miRNA genes:61
Interacting mature miRNAs:68
Transcripts:ENSRNOT00000027695
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19799775052997750Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)191922068964220689Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19799775052997750Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)194622677874246245Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)192409397369093973Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat
2303628Vencon9Ventilatory control QTL 90.005respiration trait (VT:0001943)minute ventilation (CMO:0000132)192318858668188586Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194438513474246245Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19799775052997750Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19799775052997750Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
1554318Bmd5Bone mineral density QTL 512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)192318858668188586Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)192010930665109306Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)194072709254856850Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)194072709254856850Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)194172254674246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)194072709254856850Rat

Markers in Region
RH132482  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21934,977,172 - 34,977,384 (+)MAPPERmRatBN7.2
Rnor_6.01939,272,201 - 39,272,412NCBIRnor6.0
Rnor_5.01950,136,528 - 50,136,739UniSTSRnor5.0
RGSC_v3.41936,930,192 - 36,930,403UniSTSRGSC3.4
Celera1934,400,806 - 34,401,017UniSTS
RH 3.4 Map1810.4UniSTS
Cytogenetic Map19q12UniSTS
AW534417  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21934,983,580 - 34,983,741 (+)MAPPERmRatBN7.2
Rnor_6.01939,278,609 - 39,278,769NCBIRnor6.0
Rnor_5.01950,142,937 - 50,143,097UniSTSRnor5.0
RGSC_v3.41936,936,601 - 36,936,761UniSTSRGSC3.4
Celera1934,407,214 - 34,407,374UniSTS
RH 3.4 Map19295.1UniSTS
Cytogenetic Map19q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000027695   ⟹   ENSRNOP00000027695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1951,887,221 - 51,915,566 (-)Ensembl
mRatBN7.2 Ensembl1934,977,471 - 35,005,819 (-)Ensembl
Rnor_6.0 Ensembl1939,272,499 - 39,300,893 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098839   ⟹   ENSRNOP00000083567
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1951,895,557 - 51,915,566 (-)Ensembl
mRatBN7.2 Ensembl1934,985,807 - 35,005,716 (-)Ensembl
RefSeq Acc Id: NM_001108448   ⟹   NP_001101918
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81951,887,221 - 51,915,448 (-)NCBI
mRatBN7.21934,977,471 - 35,005,701 (-)NCBI
Rnor_6.01939,272,499 - 39,300,893 (-)NCBI
Rnor_5.01950,136,319 - 50,165,159 (-)NCBI
RGSC_v3.41936,930,490 - 36,958,589 (-)RGD
Celera1934,401,104 - 34,429,331 (-)RGD
Sequence:
RefSeq Acc Id: NM_001242355   ⟹   NP_001229284
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81951,891,609 - 51,915,411 (-)NCBI
mRatBN7.21934,981,859 - 35,005,664 (-)NCBI
Rnor_6.01939,276,887 - 39,300,856 (-)NCBI
Rnor_5.01950,136,319 - 50,165,159 (-)NCBI
Celera1934,405,492 - 34,429,294 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039097857   ⟹   XP_038953785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81951,887,722 - 51,915,756 (-)NCBI
mRatBN7.21934,977,946 - 35,005,813 (-)NCBI
RefSeq Acc Id: XR_005496666
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81951,887,809 - 51,915,756 (-)NCBI
mRatBN7.21934,976,963 - 35,005,813 (-)NCBI
RefSeq Acc Id: NP_001101918   ⟸   NM_001108448
- Peptide Label: isoform 1
- UniProtKB: D3ZJF7 (UniProtKB/TrEMBL),   A6IYZ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001229284   ⟸   NM_001242355
- Peptide Label: isoform 2
- UniProtKB: F6KWE7 (UniProtKB/TrEMBL),   A0A8I6A085 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000027695   ⟸   ENSRNOT00000027695
RefSeq Acc Id: XP_038953785   ⟸   XM_039097857
- Peptide Label: isoform X1
- UniProtKB: B1H237 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000083567   ⟸   ENSRNOT00000098839
Protein Domains
HTH myb-type   Myb-like   Telomere repeat-binding factor dimerisation   Telomeric repeat-binding factor 2 Rap1-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZJF7-F1-model_v2 AlphaFold D3ZJF7 1-497 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701122
Promoter ID:EPDNEW_R11646
Type:initiation region
Name:Terf2_1
Description:telomeric repeat binding factor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01939,300,908 - 39,300,968EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310881 AgrOrtholog
BioCyc Gene G2FUF-5763 BioCyc
Ensembl Genes ENSRNOG00000020435 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027695 ENTREZGENE
  ENSRNOT00000027695.8 UniProtKB/TrEMBL
  ENSRNOT00000098839 ENTREZGENE
  ENSRNOT00000098839.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.210 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8362263 IMAGE-MGC_LOAD
InterPro Homeodomain-like UniProtKB/TrEMBL
  Myb_dom UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  Telomere_rpt-bd_fac_dimer_dom UniProtKB/TrEMBL
  Telomere_rpt-bd_fac_dimer_sf UniProtKB/TrEMBL
  TERF1/2 UniProtKB/TrEMBL
  TERF2 UniProtKB/TrEMBL
  TERF2_RBM UniProtKB/TrEMBL
KEGG Report rno:361403 UniProtKB/TrEMBL
MGC_CLONE MGC:187576 IMAGE-MGC_LOAD
NCBI Gene 361403 ENTREZGENE
PANTHER PTHR46833 UniProtKB/TrEMBL
  TELOMERIC REPEAT-BINDING FACTOR 2 UniProtKB/TrEMBL
Pfam Myb_DNA-binding UniProtKB/TrEMBL
  TERF2_RBM UniProtKB/TrEMBL
  TRF UniProtKB/TrEMBL
PhenoGen Terf2 PhenoGen
PIRSF Telomere_bd-1_Pin2 UniProtKB/TrEMBL
PROSITE HTH_MYB UniProtKB/TrEMBL
  MYB_LIKE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020435 RatGTEx
SMART SANT UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain_like UniProtKB/TrEMBL
  Telo_rept_bnd_D UniProtKB/TrEMBL
UniProt A0A8I6A085 ENTREZGENE, UniProtKB/TrEMBL
  A6IYZ2 ENTREZGENE, UniProtKB/TrEMBL
  B1H237 ENTREZGENE, UniProtKB/TrEMBL
  D3ZJF7 ENTREZGENE, UniProtKB/TrEMBL
  F6KWE7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Terf2  telomeric repeat binding factor 2   Terf2_predicted  telomeric repeat binding factor 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Terf2_predicted  telomeric repeat binding factor 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED