Advanced Search (OLGA)

Gene: Sorcs2 (sortilin-related VPS10 domain containing receptor 2) Rattus norvegicus

Analyze

Symbol:

Sorcs2

Name:

sortilin-related VPS10 domain containing receptor 2

RGD ID:

1310621

Description:

Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in intracellular protein transport and long-term synaptic depression. Predicted to be located in several cellular components, including cytosol; endosome membrane; and postsynaptic density. Predicted to be active in membrane. Orthologous to human SORCS2 (sortilin related VPS10 domain containing receptor 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3,7-dihydropurine-6-thione.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC305438; VPS10 domain receptor protein SORCS 2; VPS10 domain-containing receptor SorCS2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Allele / Splice:

Sorcs2^em4Mcwi ; Sorcs2^em1Mcwi ; Sorcs2^em7Mcwi ; Sorcs2^em9Mcwi

Genetic Models:

SS-Sorcs2^em4Mcwi ; SS-Sorcs2^em9Mcwi ; SS-Sorcs2^em7Mcwi ; SS-Sorcs2^em1Mcwi

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	78,592,290 - 78,960,582 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	78,596,087 - 78,960,582 (+)	Ensembl				GRCr8
mRatBN7.2	14	74,371,089 - 74,735,943 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	74,371,415 - 74,735,943 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	78,813,341 - 79,177,234 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	80,054,214 - 80,418,108 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	76,499,206 - 76,863,105 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	14	79,116,247 - 79,479,882 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	14	77,744,909 - 78,108,548 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	14	79,263,783 - 79,627,427 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	14	78,189,553 - 78,554,063 (+)	NCBI		F344_StmMcwi
Rnor_6.0	14	79,538,911 - 79,912,333 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	79,538,911 - 79,912,333 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	79,176,694 - 79,547,823 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	79,968,072 - 80,344,330 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	73,307,871 - 73,668,512 (+)	NCBI		Celera
RGSC_v3.1	14	80,096,523 - 80,344,581 (+)	NCBI
Cytogenetic Map	14	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,7-dihydropurine-6-thione (EXP)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (EXP,ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzene-1,2,4-triol (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

butane-2,3-dione (ISO)

Butylbenzyl phthalate (ISO)

cantharidin (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dorsomorphin (ISO)

doxorubicin (EXP,ISO)

endosulfan (EXP)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenvalerate (EXP)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

furan (EXP)

genistein (ISO)

gentamycin (EXP)

glyphosate (EXP)

hydrogen peroxide (ISO)

iron dichloride (ISO)

isoprenaline (ISO)

L-methionine (ISO)

lead diacetate (ISO)

lead(0) (ISO)

manganese(II) chloride (EXP)

mercaptopurine (EXP)

methapyrilene (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

okadaic acid (ISO)

ozone (ISO)

panobinostat (ISO)

paraquat (EXP)

pentane-2,3-dione (ISO)

phenylmercury acetate (ISO)

purine-6-thiol (EXP)

SB 431542 (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

sunitinib (ISO)

testosterone (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

intracellular protein transport (IEA,ISO)

long-term synaptic depression (IEA,ISO)

Cellular Component

early endosome membrane (IEA,ISO)

membrane (IBA,IEA)

plasma membrane (IEA,ISO)

postsynaptic density (IEA,ISO)

recycling endosome membrane (IEA,ISO)

Molecular Function

protein binding (ISO)

transmembrane signaling receptor activity (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:27457814	PMID:30840898

Genomics

Comparative Map Data

Sorcs2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	78,592,290 - 78,960,582 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	78,596,087 - 78,960,582 (+)	Ensembl				GRCr8
mRatBN7.2	14	74,371,089 - 74,735,943 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	74,371,415 - 74,735,943 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	78,813,341 - 79,177,234 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	80,054,214 - 80,418,108 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	76,499,206 - 76,863,105 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	14	79,116,247 - 79,479,882 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	14	77,744,909 - 78,108,548 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	14	79,263,783 - 79,627,427 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	14	78,189,553 - 78,554,063 (+)	NCBI		F344_StmMcwi
Rnor_6.0	14	79,538,911 - 79,912,333 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	79,538,911 - 79,912,333 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	79,176,694 - 79,547,823 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	79,968,072 - 80,344,330 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	73,307,871 - 73,668,512 (+)	NCBI		Celera
RGSC_v3.1	14	80,096,523 - 80,344,581 (+)	NCBI
Cytogenetic Map	14	q21	NCBI

SORCS2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	7,192,538 - 7,742,827 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	7,192,538 - 7,742,827 (+)	Ensembl			hg38	GRCh38
GRCh37	4	7,194,265 - 7,744,554 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	7,245,373 - 7,795,464 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	4	7,312,543 - 7,862,634	NCBI
Celera	4	7,098,892 - 7,646,499 (+)	NCBI		Celera
Cytogenetic Map	4	p16.1	NCBI
HuRef	4	7,121,365 - 7,666,825 (+)	NCBI		HuRef
CHM1_1	4	7,192,978 - 7,742,776 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	7,165,091 - 7,714,720 (+)	NCBI		T2T-CHM13v2.0

Sorcs2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	36,174,524 - 36,555,541 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	36,174,524 - 36,555,483 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	36,017,180 - 36,398,197 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	36,017,180 - 36,398,139 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	36,359,829 - 36,740,788 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	36,334,092 - 36,715,203 (-)	NCBI		MGSCv36	mm8
Celera	5	33,494,787 - 33,878,421 (-)	NCBI		Celera
Cytogenetic Map	5	B3	NCBI
cM Map	5	19.14	NCBI

Sorcs2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955514	3,053,071 - 3,390,125 (-)	Ensembl
ChiLan1.0	NW_004955514	3,053,127 - 3,390,125 (-)	NCBI	ChiLan1.0	ChiLan1.0

SORCS2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	7,461,355 - 8,018,926 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	7,390,923 - 7,947,395 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	4	7,259,342 - 7,805,275 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	7,259,337 - 7,803,594 (+)	Ensembl			panPan2	panpan1.1

SORCS2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	59,319,707 - 59,679,071 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	59,255,848 - 59,679,049 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	61,869,645 - 62,328,037 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	59,694,699 - 60,150,946 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	59,693,881 - 60,150,928 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	59,190,682 - 59,647,586 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	59,393,438 - 59,850,032 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	59,749,003 - 60,208,135 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sorcs2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	65,251,269 - 65,577,361 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936477	18,952,959 - 19,279,198 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936477	18,952,965 - 19,279,053 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SORCS2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	3,207,098 - 3,760,393 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	3,207,087 - 3,715,002 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	3,962,102 - 4,004,672 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SORCS2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	43,629,273 - 43,700,888 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666113	202,336 - 351,788 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sorcs2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624755	23,479,893 - 23,659,370 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624755	23,346,247 - 23,657,637 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sorcs2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	11	68,705,836 - 69,067,935 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sorcs2
2001 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	939
Count of miRNA genes:	310
Interacting mature miRNAs:	378
Transcripts:	ENSRNOT00000009960
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	38023710	83023710	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	59848686	104848686	Rat
1582236	Gluco22	Glucose level QTL 22	3.3	0.0164	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	77640071	96755654	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	77914838	104348525	Rat
70214	Niddm28	Non-insulin dependent diabetes mellitus QTL 28	4.06		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	39009444	84009444	Rat
70153	Bp59	Blood pressure QTL 59	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	14	72970210	87582095	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30674469	85041098	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	33424686	102238540	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	74255551	109089856	Rat
1582197	Gluco27	Glucose level QTL 27	3.4	0.0006	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	77640071	96755654	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	38023710	83023710	Rat
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	62398852	107398852	Rat
1582250	Gluco26	Glucose level QTL 26	3.3	0.0009	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	77640071	100078267	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	60854936	105854936	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	74255551	109089856	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11334716	100078267	Rat
1582255	Gluco29	Glucose level QTL 29	3.1	0.0025	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	14	77640071	96755654	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	59848686	104848686	Rat
1582209	Gluco20	Glucose level QTL 20	3.8	0.0005	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	77640071	96755654	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	38023710	83023710	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42616258	99224555	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	65920283	99224555	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39411170	87582095	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	38023710	83023710	Rat

Markers in Region

D14Rat127

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	14	78,652,848 - 78,653,078 (+)	Marker Load Pipeline
mRatBN7.2	14	74,428,179 - 74,428,411 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	79,596,105 - 79,596,334	NCBI	Rnor6.0
Rnor_5.0	14	79,233,168 - 79,233,397	UniSTS	Rnor5.0
RGSC_v3.4	14	80,026,543 - 80,026,772	UniSTS	RGSC3.4
RGSC_v3.4	14	80,026,542 - 80,026,772	RGD	RGSC3.4
Celera	14	73,363,714 - 73,363,943	UniSTS
RGSC_v3.1	14	80,028,934 - 80,029,163	RGD
RH 3.4 Map	14	452.44	RGD
RH 3.4 Map	14	452.44	UniSTS
SHRSP x BN Map	14	40.7199	RGD
SHRSP x BN Map	14	40.7199	UniSTS
Cytogenetic Map	14	q21	UniSTS

D14Got140

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	74,674,873 - 74,675,072 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	79,851,270 - 79,851,468	NCBI	Rnor6.0
Rnor_5.0	14	79,486,998 - 79,487,196	UniSTS	Rnor5.0
RGSC_v3.4	14	80,281,544 - 80,281,742	UniSTS	RGSC3.4
Cytogenetic Map	14	q21	UniSTS

RH144526

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	74,544,818 - 74,545,030 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	79,711,867 - 79,712,078	NCBI	Rnor6.0
Rnor_5.0	14	79,348,058 - 79,348,269	UniSTS	Rnor5.0
RGSC_v3.4	14	80,141,917 - 80,142,128	UniSTS	RGSC3.4
Celera	14	73,479,865 - 73,480,076	UniSTS
Cytogenetic Map	14	q21	UniSTS

UniSTS:478869

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	14	78,746,344 - 78,746,493 (+)	Marker Load Pipeline
mRatBN7.2	14	74,521,686 - 74,521,834 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	79,688,704 - 79,688,851	NCBI	Rnor6.0
Rnor_5.0	14	79,325,231 - 79,325,378	UniSTS	Rnor5.0
RGSC_v3.4	14	80,117,357 - 80,117,504	UniSTS	RGSC3.4
Celera	14	73,457,010 - 73,457,157	UniSTS
Cytogenetic Map	14	q21	UniSTS

UniSTS:478870

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	74,503,080 - 74,503,223 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	79,670,072 - 79,670,214	NCBI	Rnor6.0
Rnor_5.0	14	79,306,599 - 79,306,741	UniSTS	Rnor5.0
RGSC_v3.4	14	80,098,752 - 80,098,894	UniSTS	RGSC3.4
Celera	14	73,438,421 - 73,438,555	UniSTS
Cytogenetic Map	14	q21	UniSTS

Genetic Models

This gene Sorcs2 is modified in the following models/strains:

SS-Sorcs2^em4Mcwi SS-Sorcs2^em9Mcwi SS-Sorcs2^em7Mcwi SS-Sorcs2^em1Mcwi

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	57	59	6	321	157	10	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000009960 ⟹ ENSRNOP00000009960

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	78,596,087 - 78,960,582 (+)	Ensembl
mRatBN7.2 Ensembl	14	74,371,415 - 74,735,943 (+)	Ensembl
Rnor_6.0 Ensembl	14	79,538,911 - 79,912,333 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089334 ⟹ ENSRNOP00000074805

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	14	79,540,235 - 79,912,290 (+)	Ensembl

RefSeq Acc Id:

NM_001107225 ⟹ NP_001100695

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	78,596,087 - 78,960,582 (+)	NCBI
mRatBN7.2	14	74,371,415 - 74,735,943 (+)	NCBI
Dahl_SR_JrHsd	14	79,116,247 - 79,479,882 (+)	NCBI
Lyon_Normotensive	14	77,744,909 - 78,108,548 (+)	NCBI
Lyon_Hypertensive	14	79,263,783 - 79,627,427 (+)	NCBI
F344_StmMcwi	14	78,189,553 - 78,554,063 (+)	NCBI
Rnor_6.0	14	79,538,911 - 79,912,333 (+)	NCBI
Rnor_5.0	14	79,176,694 - 79,547,823 (+)	NCBI
RGSC_v3.4	14	79,968,072 - 80,344,330 (+)	RGD
Celera	14	73,307,871 - 73,668,512 (+)	RGD

Sequence:

show sequence

CCTTTCTCTGCGCTCTTGCTCAAGCTTCCAGCGCCCTCCCGCTCTCGCGGCCGCGGTGTCGCCC
GTACCGCCCCGCCGCTACCTACCGGCGACCATGGCGCACCGGGGAACCCCGAGCGCCCCGAAGC
GTCCTGGCCTTACTGCGCCGGATCGGAGCTCCCAGGTTCTGCTGCCGCCGTGCTGGCCACGTTC
GTGGCCGCTGCTGCTGCTGCTGCTGGTGCTGGTGGCTGCCTGCGGAGCGATGGGGCGCTCCCCC
CAGCCCGGGCGCTGGGGTCCCAGTGTGCAGGTCACCAGGCTGCTGCCCGCGGGACGCACGGAGT
CCAGCAATCGCCAGGATCCGCAGACACGAGAATCGGAGCCTGGCGTCCCGGGTCTCCGTCCGGG
TTCTGCTTCGGGTCCCAGCACTGATGGCGCCCCAGCTCTGGGCAAGGGGCGCAGGGTTCGGGCG
GCGCCGGTGGCCGGTGCAGCTTCGGCTTCGCGCGCACAGGTCTCGCTCATCAGCACGTCGTTCG
TGCTCAAGGGAGACGCGACGCACAACCAGGCGATGGTACACTGGACAGGAGAGAACAGCAGCGT
CATCCTGATCCTGACGAAGTACTACCATGCAGACATGGGGAAGGTTCTGGAAAGTTCTCTCTGG
AGGTCCTCAGATTTTGGGACAACCTACACCAAGCTTACTCTCCAACCTGGTGTCACCACTGTCA
TTGACAACTTCTATATCTGCCCTGCTAACAAAAGAAAGATCATCCTGGTGAGCTCATCCCTCGG
TGACAGGGAACAGAGCCTCTTCCTCAGCACTGACGAGGGCACCACATTCCAGAAGTATCCTGTC
CCCTTCCTTGTGGAGACTCTCCTCTTTCACCCAAAGGAGGAGGACAAGGTTCTTGCCTACACCA
AGGACAGCAAGCTGTATGTGTCGTCCGACCTGGGGAAGAAGTGGACACTGCTGCAGGAACAGGT
GACCAAGGACCACGTGTTCTGGGCTGTGTCTGGGGTGGATGACGACCCCAACCTGGTCCACATG
GAAGCACGGGACCTCAGTGGAGGCTATCGGTACTACACGTGTCTGATCCACAACTGCTCAGCCC
AGCCACACACAGCACCCTTCCCTGGCCCCACTGACCGAGGGTCCCTGACCGTGCAGGATGAGTA
CATCTTTTTGAAGGCGACATCAACAAACCGAACCAAATACTATGTCTCTTATCGCCGCAGCGAC
TTTGTCCTGATGAAGCTGCCCAAGTATGCCCTGCCCAAGGACCTACAGATCATCAGCACAGATG
AGCAGCAGGTGTTCGTGGCCGTCCAGGAGTGGAACCAGGTGGACACCTACAACCTGTACCAGTC
GGACCTGCGTGGAGTGCGCTATTCGCTGGTGCTGGAGAACGTGCGCAGCTCGAGGCAGGCTGAG
GAGAATGTGGTCATCGACATCCTTGAGGTCAGAGGGGTGAAGGGAGTCTTCTTGGCAAACCAGA
AAGTGGATGGCAAGGTGACAACAGTCATAACCTACAACAAGGGCCGTGACTGGGATTACCTGAG
GCCACCCAGCACTGACATGAATGGGAAACCTACCAACTGCCAGCCACCGGACTGCCACCTGCAC
CTGCACCTGCGCTGGGCAGACAACCCCTATGTGTCAGGCACGGTACACACCAAGGACACTGCCC
CTGGCCTCATCATGGGTGCAGGTAACCTGGGCTCACAGTTGGTGGAGTATAAAGAGGAAATGTA
CATCACATCTGACTGCGGGCACACCTGGAGACAGGTCTTTGAGGAAGAGCACCATGTCCTGTAC
CTGGACCACGGTGGTGTCATTGCTGCCATCAAGGACACCTCCATCCCCCTGAAGACCCTCAAGT
TCAGCGTGGACGAGGGCCACACTTGGAGTACACACAACTTCACCAGCACCTCAGTGTTCGTGGA
TGGGCTGCTGAGCGAACCAGGGGATGAAACGCTGGTCATGACGGTCTTTGGTCACATCAGCTTC
CGCTCTGACTGGGAGCTGGTCAAGGTGGACTTCCGGCCCTCCTTCCCCAGGCCATGTGTTGAGG
ATGACTATAGCTCCTGGGACCTCACTGACCTCCAGGGTGACCACTGTATCATGGGCCAGCAGAG
AAGTTACCGGAAGAGAAAGTCCACGTCCTGGTGTGTCAAGGGGAGGAGCTTCACGTCAGCACTC
ACATCCCGTGTGTGCAAGTGCCGGGACTCTGACTTCCTCTGTGACTACGGGTTTGAGCGCTCAT
CTTCCTCAGAGTCTACTGTCAACAAGTGCTCTGCCAACTTCTGGTTCAACCCCCTGTCTCCTCC
TGAAGACTGTGTCCTAGGACAGACCTATACCAGTAGCCTTGGGTACCGGAAGGTGGTGTCCAAT
GTGTGCGAAGGTGGTGTGGACCTGCAGCAGAGCCCAGTGCAGCTGCAGTGCCCCCTACAAGCAC
CGCGGGGCCTGCAGGTGAGCATCCGAGGAGAGGCAGTGGCTGTGCGACCTAGAGAAGATGTGCT
GTTTGTGGTGCGACAGGAACAGGGTGATGTCCTGACCACTAAGTATCAGGTGGATCTTGGGGAC
GGCTTCAAGGCCATGTACGTGAACCTCACTCTGACAGGCGAGCCCATTCGGCACCACTACGAGA
GTCCTGGCATCTACCGTGTGTCTGTCAGGGCTGAGAACATGGCAGGCCACGATGAGGCTGTGCT
CTTTGTCCAGGTCAACTCTCCCCTGCAGGCCCTCTACCTCGAAGTAGTCCCTGTCATTGGCATC
AACCAAGAGGTGAACCTCACAGCTGTGCTGTTACCGCTGAACCCCAATCTCACTGTCTTCTACT
GGTGGATCGGCCACAGCTTGCAGCCTCTGCTTTCCTTGGACAACTCCGTGACAACAAGGTTTAC
AGATGCTGGGGATGTGCGTGTGACAGTGCAAGCTGCCTGTGGGAACTCGGTGCTCCAGGACTCC
AGGCTCGTCCGTGTGCTCGATCAGTTCCAGGTGGTGCCTCTGCAGTTCTCCAGGGACCTGGACA
CCTTTAACCCCAACACGCCTGAATGGAGGGAGGACGTGGGATTGGTGGTCACCCGACTTCTCTC
CAAGGAGACCAGCATCCCAGAGGAGCTACTAGTGACTGTGGTCAAGCCAGGGCTGCCCACCATA
GCGGATCTGTATGTGCTTCTGCCTCCTCCCAGGCCCACAAGGAAGAGGAGCCTCACAAGTGACA
AGAGGCTGGCAGCTGTGCAGCAGGCACTGAACTCCCACAGGATCAGCTTCATCCTTCGAGGAGG
GCTTCGTGTCCTGGTGGAGCTGAGGGACACAGATGCAGGTCCTCAGAGGCCGGGTGGCAGTGGT
GGCTACTGGGCTGTGGTGGTCCTCTTTGTCATCGGGCTCTTTGCAGTAGGAGCATTCATCCTCT
ACAAGTTCAAAAGGAAGCGCCCAGGCAGGACGGTGTACGCCCAGATGCACAATGAGAAGGAACA
GGAGATGACAAGTCCCGTGAGCCACAGTGAGGACGCCCAGAGCGCCATGCAAGGCAACCACTCA
GGTGTGGTCCTGAGCATCAACTCTCGAGAGATGCATAGCTACCTGGTGGGCTGATGGCATCAGC
TGGCCAGGACACGCTCCTCCTGCTTCCTTCATAGAGGGCGCAGGACCGCAAGTACAGCTGGAAC
GACACACCCTCTGAGACCTGTGGAAAGGCCAACTCCTCTAGCTGTCCCCACTCAGAGGACAGAC
ACCTCTCCCTGTCAGCCCCAGCTGGCCCATGGGATCCTGGGACAGCCGACTCATGACCCACCTG
GACATGGGCCTGTGGTGCCACACAAAGTCCCCACCCTTGACTCTGAGGCATCACAGTCCTTAGA
CCTGAGCATGCTGCCCTGGCTGCTCCAACTTGCCACTGCAGCCCAGGACTGGCTTCTCCTGCCT
GGGGCTGGACCAGCCTATTTCTGGGGTGAGCCTGCAGCCACCCCACCCCACACACTCCAGACTT
GTAGACCTGCTCAGCCCTGGCCCCACAGTCCCTGTCCCTGCAGGGGACCCCAGAGCCAGGAAGT
CTATGGGCCAGACCTGTCTAACACCACCTTCCAGGCAGCCACTCTTCACTGCAGTGTAAATACC
TGCCCGGGTAGAGCTATTTGAGTTTGGGGGGCTCTTTCTTTTAGCTTTCTGTTTTCAAGGCCAG
GCAATAGAATCCATCTACGTTCTATCAGAATCCCATTCTCAGAACCCCTCTTTCAGAATGCCCA
GAGCTGGGCCTAGAGGGGCAAATAATCTCTCTGATTTTCCCTCAGGGCTATGGGGTTGGAGGCA
AGAAAGGGAGGAACCCTTACATGCAATTCCAGCTATGTCCAGCAGGATGCACCCTTCCACAGCT
TCTAGGCTGATGACTGCTTTCTGGTCAGGGCTGGGCTCTAGAAATGTCTACAGGCCCCAGAAAG
GCACATTAGCTGAATACATCAGGCTCTGATGCCCTATGGTTTGAGGGACCCTTGTGGAACCAAC
CAGGAGAGGTGTGGGAGGGCAGCGTCTCCTGGTGAAATGAACTAGAGGATCCAGGGACTTGTGG
CCCTTTCAAGGTCGTAGAAAGAAAAGCAGCAGAGGTAGCCCTAGAGTCACCTGCTGTCTGCTCC
CACTGCCAAGTCAGGGACCCAGCACAGGTTGACACTGTGAGCTGGCACAATTCACCTTTTGCCT
TGAACTGAAGTCAGTATTCCCTTCCCTTCCCCTCCTCTTCCCTCCTCCCACCTCAGACTCTTGC
TGCCCCACCAGAAAGCCCAGGCTGGCCTGGTGCCAGGCCTAGGTGTCTCCCCACCCGCTGCTGC
TGCTGCTGCACACCCACCAGCACCCACCAGTTCTCCCTGGGGAAGAGCTGTGGTCTATATAGGA
GGAGAGGTCTAGGACAGACCCTCACACAGGACAGCTCAGCACTCCAGACACTCATGTCACAGAC
CAGGGCAGCTATGTGGGCACAAAGCCGGTCTGTGGGAGGATCTCAACTGTACCCCAATATCTCT
CACTTTCTGCCACTCTCTGGGGCTCAGGGGTCCCTCCAGAGGTAACTGCAGGCTGTCCTCCCTG
TGAGGGGCTACCAATGGGACCCTAGTGCCAGGGAAGGCTGTGACACTCTAAGGCATTTGCCCCA
CATGGCTTCTTGCTATCTCAAAAGAAACCTAAGCAGAGACCTTTCCCCCATCCATGTCCCCACA
ACACTGTATCATCCAGTCCCACACAGAAGGAGATGCTCACACACCATAGTCTCCACTAGGTCCA
CGGTCAGCACAGAACCCCTGGATGTAGCCCATCACTTTAGCCCACCAGTGCCTGGGGTACCAAC
TGTAGGTCTTTGCCTTCCTGGAGCACTGTGTTACCCTCAAGGACACTTGGGTAGGCTTTCCCTT
GATGTTCAGGTTTTGTGTTACTATTTCTATTAAGAACATTTGGAGTGCATAGACCCAGGAGCCT
CCCTGTTCTCATCTCTGTAACTGCAGACAGCTATGCAGGCACAGAGTTTCCCTGCTTCTCAGCC
GAGGTGCCATGCATTGTATAGTCAGGGGCAAAAGCCCCACGGACAGCCCAGATGCCACCAGCTC
AGGGGCTCACAAGCACTCTCCACTGGGACCTGTGCATACCTGGCATGTGGGCATAGCTGAGGTG
ATAAATTCTTTGTTTTTTCCTTTCTAAAAAAAAAAAAACCAATAAATCATTTGTGATGGTTTTA
ACAAAGGTTAAATCGACA

hide sequence

RefSeq Acc Id:

XM_039091954 ⟹ XP_038947882

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	78,592,295 - 78,960,569 (+)	NCBI
mRatBN7.2	14	74,371,091 - 74,735,937 (+)	NCBI

RefSeq Acc Id:

XM_039091956 ⟹ XP_038947884

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	78,598,222 - 78,960,569 (+)	NCBI
mRatBN7.2	14	74,373,548 - 74,735,937 (+)	NCBI

RefSeq Acc Id:

XM_039091957 ⟹ XP_038947885

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	78,596,690 - 78,960,569 (+)	NCBI
mRatBN7.2	14	74,372,023 - 74,735,937 (+)	NCBI

RefSeq Acc Id:

XM_039091958 ⟹ XP_038947886

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	78,592,290 - 78,941,078 (+)	NCBI
mRatBN7.2	14	74,371,089 - 74,716,311 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100695	(Get FASTA)	NCBI Sequence Viewer
	XP_038947882	(Get FASTA)	NCBI Sequence Viewer
	XP_038947884	(Get FASTA)	NCBI Sequence Viewer
	XP_038947885	(Get FASTA)	NCBI Sequence Viewer
	XP_038947886	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM00049	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000009960
	ENSRNOP00000009960.8

RefSeq Acc Id:	NP_001100695 ⟸ NM_001107225
- Peptide Label:	precursor
- UniProtKB:	A6IJY5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAHRGTPSAPKRPGLTAPDRSSQVLLPPCWPRSWPLLLLLLVLVAACGAMGRSPQPGRWGPSVQ VTRLLPAGRTESSNRQDPQTRESEPGVPGLRPGSASGPSTDGAPALGKGRRVRAAPVAGAASAS RAQVSLISTSFVLKGDATHNQAMVHWTGENSSVILILTKYYHADMGKVLESSLWRSSDFGTTYT KLTLQPGVTTVIDNFYICPANKRKIILVSSSLGDREQSLFLSTDEGTTFQKYPVPFLVETLLFH PKEEDKVLAYTKDSKLYVSSDLGKKWTLLQEQVTKDHVFWAVSGVDDDPNLVHMEARDLSGGYR YYTCLIHNCSAQPHTAPFPGPTDRGSLTVQDEYIFLKATSTNRTKYYVSYRRSDFVLMKLPKYA LPKDLQIISTDEQQVFVAVQEWNQVDTYNLYQSDLRGVRYSLVLENVRSSRQAEENVVIDILEV RGVKGVFLANQKVDGKVTTVITYNKGRDWDYLRPPSTDMNGKPTNCQPPDCHLHLHLRWADNPY VSGTVHTKDTAPGLIMGAGNLGSQLVEYKEEMYITSDCGHTWRQVFEEEHHVLYLDHGGVIAAI KDTSIPLKTLKFSVDEGHTWSTHNFTSTSVFVDGLLSEPGDETLVMTVFGHISFRSDWELVKVD FRPSFPRPCVEDDYSSWDLTDLQGDHCIMGQQRSYRKRKSTSWCVKGRSFTSALTSRVCKCRDS DFLCDYGFERSSSSESTVNKCSANFWFNPLSPPEDCVLGQTYTSSLGYRKVVSNVCEGGVDLQQ SPVQLQCPLQAPRGLQVSIRGEAVAVRPREDVLFVVRQEQGDVLTTKYQVDLGDGFKAMYVNLT LTGEPIRHHYESPGIYRVSVRAENMAGHDEAVLFVQVNSPLQALYLEVVPVIGINQEVNLTAVL LPLNPNLTVFYWWIGHSLQPLLSLDNSVTTRFTDAGDVRVTVQAACGNSVLQDSRLVRVLDQFQ VVPLQFSRDLDTFNPNTPEWREDVGLVVTRLLSKETSIPEELLVTVVKPGLPTIADLYVLLPPP RPTRKRSLTSDKRLAAVQQALNSHRISFILRGGLRVLVELRDTDAGPQRPGGSGGYWAVVVLFV IGLFAVGAFILYKFKRKRPGRTVYAQMHNEKEQEMTSPVSHSEDAQSAMQGNHSGVVLSINSRE MHSYLVG hide sequence

Ensembl Acc Id:

ENSRNOP00000074805 ⟸ ENSRNOT00000089334

Ensembl Acc Id:

ENSRNOP00000009960 ⟸ ENSRNOT00000009960

RefSeq Acc Id:	XP_038947886 ⟸ XM_039091958
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038947882 ⟸ XM_039091954
- Peptide Label:	isoform X1
- UniProtKB:	D3ZW09 (UniProtKB/TrEMBL), A6IJY5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038947885 ⟸ XM_039091957
- Peptide Label:	isoform X3
- UniProtKB:	A6IJY5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038947884 ⟸ XM_039091956
- Peptide Label:	isoform X2
- UniProtKB:	A6IJY5 (UniProtKB/TrEMBL)

Protein Domains

PKD

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZW09-F1-model_v2	AlphaFold	D3ZW09	1-1158	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699385

Promoter ID:

EPDNEW_R9910

Type:

single initiation site

Name:

Sorcs2_1

Description:

sortilin-related VPS10 domain containing receptor 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	79,538,911 - 79,538,971	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310621	AgrOrtholog
BioCyc Gene	G2FUF-15332	BioCyc
Ensembl Genes	ENSRNOG00000007033	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000009960	ENTREZGENE
	ENSRNOT00000009960.9	UniProtKB/TrEMBL
Gene3D-CATH	2.10.70.80	UniProtKB/TrEMBL
	2.130.10.10	UniProtKB/TrEMBL
	2.60.40.10	UniProtKB/TrEMBL
	3.30.60.270	UniProtKB/TrEMBL
InterPro	Ig-like_fold	UniProtKB/TrEMBL
	PKD_dom	UniProtKB/TrEMBL
	PKD_dom_sf	UniProtKB/TrEMBL
	Sortilin_C	UniProtKB/TrEMBL
	Sortilin_N	UniProtKB/TrEMBL
	VPS10	UniProtKB/TrEMBL
	VPS10-sortilin	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom	UniProtKB/TrEMBL
NCBI Gene	305438	ENTREZGENE
PANTHER	SORTILIN RELATED	UniProtKB/TrEMBL
	VPS10 DOMAIN-CONTAINING RECEPTOR SORCS2	UniProtKB/TrEMBL
Pfam	PKD	UniProtKB/TrEMBL
	Sortilin-Vps10	UniProtKB/TrEMBL
	Sortilin_C	UniProtKB/TrEMBL
PhenoGen	Sorcs2	PhenoGen
PROSITE	PKD	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000007033	RatGTEx
SMART	VPS10	UniProtKB/TrEMBL
Superfamily-SCOP	Oligoxyloglucan reducing end-specific cellobiohydrolase	UniProtKB/TrEMBL
	PKD	UniProtKB/TrEMBL
UniProt	A6IJY5	ENTREZGENE, UniProtKB/TrEMBL
	D3ZW09	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Sorcs2	sortilin-related VPS10 domain containing receptor 2	Sorcs2_predicted	sortilin-related VPS10 domain containing receptor 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Sorcs2_predicted	sortilin-related VPS10 domain containing receptor 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message