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Gene: Slitrk3 (SLIT and NTRK-like family, member 3) Rattus norvegicus

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Symbol:

Slitrk3

Name:

SLIT and NTRK-like family, member 3

RGD ID:

1310506

Description:

Predicted to be involved in axonogenesis; regulation of synapse assembly; and synaptic membrane adhesion. Predicted to act upstream of or within GABAergic synaptic transmission and synapse organization. Is active in postsynaptic density membrane. Orthologous to human SLITRK3 (SLIT and NTRK like family member 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3,4-methylenedioxymethamphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC310519; SLIT and NTRK-like protein 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	159,983,650 - 159,996,194 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	159,973,029 - 159,996,342 (-)	Ensembl				GRCr8
mRatBN7.2	2	157,680,067 - 157,697,404 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	157,687,535 - 157,696,709 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	164,811,274 - 164,819,329 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	162,861,763 - 162,869,820 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	157,494,537 - 157,502,594 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	170,446,582 - 170,461,513 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	170,452,702 - 170,460,754 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	189,791,839 - 189,803,411 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	163,703,843 - 163,711,895 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	151,947,474 - 151,955,526 (-)	NCBI		Celera
RGSC_v3.1	2	163,653,847 - 163,658,733 (-)	NCBI
Cytogenetic Map	2	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-sulfonyldiphenol (EXP)

6-propyl-2-thiouracil (EXP)

Aflatoxin B2 alpha (ISO)

amiodarone (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

calcitriol (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cytarabine (ISO)

dorsomorphin (ISO)

ethylparaben (ISO)

fenvalerate (EXP)

fonofos (ISO)

iron dichloride (ISO)

methimazole (EXP)

okadaic acid (ISO)

parathion (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

rotenone (ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

sotorasib (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

terbufos (ISO)

testosterone (ISO)

titanium dioxide (ISO)

trametinib (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axonogenesis (IBA,IEA,ISO)

gephyrin clustering involved in postsynaptic density assembly (ISO)

neurotransmitter-gated ion channel clustering (ISO)

positive regulation of synapse assembly (IBA,IEA,ISO)

postsynaptic density assembly (ISO)

regulation of presynapse assembly (ISO)

synaptic membrane adhesion (ISO)

synaptic transmission, GABAergic (ISO)

terminal button organization (ISO)

Cellular Component

cell surface (ISO)

GABA-ergic synapse (IBA,ISO)

membrane (IEA)

postsynaptic density membrane (IBA,IDA,IEP)

postsynaptic membrane (ISO)

postsynaptic specialization membrane (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Slitrks control excitatory and inhibitory synapse formation with LAR receptor protein tyrosine phosphatases.	Yim YS, etal., Proc Natl Acad Sci U S A. 2013 Mar 5;110(10):4057-62. doi: 10.1073/pnas.1209881110. Epub 2013 Jan 23.

Additional References at PubMed

PMID:14550773	PMID:22286174	PMID:24613359	PMID:27565350

Genomics

Comparative Map Data

Slitrk3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	159,983,650 - 159,996,194 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	159,973,029 - 159,996,342 (-)	Ensembl				GRCr8
mRatBN7.2	2	157,680,067 - 157,697,404 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	157,687,535 - 157,696,709 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	164,811,274 - 164,819,329 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	162,861,763 - 162,869,820 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	157,494,537 - 157,502,594 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	170,446,582 - 170,461,513 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	170,452,702 - 170,460,754 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	189,791,839 - 189,803,411 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	163,703,843 - 163,711,895 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	151,947,474 - 151,955,526 (-)	NCBI		Celera
RGSC_v3.1	2	163,653,847 - 163,658,733 (-)	NCBI
Cytogenetic Map	2	q32	NCBI

SLITRK3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	165,186,720 - 165,197,109 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	165,186,325 - 165,197,109 (-)	Ensembl			hg38	GRCh38
GRCh37	3	164,904,508 - 164,914,897 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	166,387,202 - 166,397,163 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	166,387,211 - 166,397,171	NCBI
Celera	3	163,303,200 - 163,313,157 (-)	NCBI		Celera
Cytogenetic Map	3	q26.1	NCBI
HuRef	3	162,274,102 - 162,284,057 (-)	NCBI		HuRef
CHM1_1	3	164,867,392 - 164,877,350 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	167,969,610 - 167,980,005 (-)	NCBI		T2T-CHM13v2.0

Slitrk3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	72,954,399 - 72,965,298 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	72,954,598 - 72,965,136 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	73,047,066 - 73,057,953 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	73,047,265 - 73,057,803 (-)	Ensembl			mm10	GRCm38
MGSCv37	3	72,852,047 - 72,860,865 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	73,134,051 - 73,142,869 (-)	NCBI		MGSCv36	mm8
Celera	3	73,161,163 - 73,169,943 (-)	NCBI		Celera
Cytogenetic Map	3	E3	NCBI
cM Map	3	32.59	NCBI

Slitrk3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955448	14,846,976 - 14,852,612 (-)	Ensembl
ChiLan1.0	NW_004955448	14,846,976 - 14,852,612 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLITRK3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	163,077,778 - 163,096,660 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	163,082,506 - 163,099,014 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	162,207,530 - 162,223,830 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	170,263,109 - 170,274,217 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	170,265,342 - 170,268,275 (-)	Ensembl			panPan2	panpan1.1

SLITRK3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	30,447,606 - 30,456,444 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	30,447,659 - 30,450,598 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	39,508,350 - 39,517,571 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	30,508,728 - 30,517,972 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	30,508,739 - 30,517,944 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	30,452,470 - 30,461,687 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	30,403,986 - 30,413,213 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	30,673,215 - 30,682,473 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Slitrk3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	96,524,602 - 96,539,253 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936707	1,315,267 - 1,324,026 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936707	1,315,267 - 1,324,793 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLITRK3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	104,449,973 - 104,461,119 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	104,443,610 - 104,461,850 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	112,883,358 - 112,893,492 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLITRK3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	24,361,523 - 24,374,865 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	24,367,287 - 24,370,226 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666063	33,329,965 - 33,345,375 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slitrk3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	43,181,820 - 43,191,531 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	43,175,690 - 43,191,689 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Slitrk3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	83,134,328 - 83,146,789 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Slitrk3
128 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	97
Count of miRNA genes:	84
Interacting mature miRNAs:	87
Transcripts:	ENSRNOT00000013009
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631566	Bp90	Blood pressure QTL 90		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	149957381	221199885	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	138595962	205135428	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
1581578	Cm49	Cardiac mass QTL 49	4.9	0.01	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	145807215	220931416	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	124537199	209621565	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	78269809	208420281	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	122597372	215234002	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	154723085	199723085	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	145807215	190807215	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	154723085	199723085	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	159440891	205135267	Rat
10043139	Iddm55	Insulin dependent diabetes mellitus QTL 55	3.1	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	150313808	195313808	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	154723085	199723085	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	154723085	199723085	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	159440891	220931218	Rat
12879845	Cm89	Cardiac mass QTL 89		0.008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	154723085	178247591	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	143565208	188565208	Rat
12879846	Cm90	Cardiac mass QTL 90		0.011	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	2	154723085	178247591	Rat
12879847	Am4	Aortic mass QTL 4		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	154723085	178247591	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	154723085	199723085	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	139067258	192287892	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	159440760	195313808	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	144882354	205135428	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845182	205135428	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	251712708	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	139067258	184067258	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	78269809	205135428	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	159440760	228950743	Rat
2301415	Cm67	Cardiac mass QTL 67		0.003	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	154723085	178247591	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	143344967	251712708	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	143746578	205135428	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	143344967	251712708	Rat
11565180	Kidm56	Kidney mass QTL 56		0.003	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	154723085	178247591	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150096616	195096616	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	114384617	215381366	Rat
11565181	Bw176	Body weight QTL 176		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	2	154723085	178247591	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	145306936	212705578	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	113746222	205135428	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	147287892	192287892	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	114384617	215381366	Rat
738007	Anxrr7	Anxiety related response QTL 7	4.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	120339555	165339555	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	223841096	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	117415288	205135428	Rat
631520	Bp73	Blood pressure QTL 73		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	149806826	170653323	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150096616	195096616	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
1354594	Despr10	Despair related QTL 10		2e-06	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	2	116804572	161804572	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	76328396	209350714	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	145807215	173074435	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
7	5	15	130	37	32	16	8	16	6	111	41	1	119	42	73	16	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000013009 ⟹ ENSRNOP00000013009

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	159,974,529 - 159,995,899 (-)	Ensembl
mRatBN7.2 Ensembl	2	157,688,503 - 157,696,555 (-)	Ensembl
Rnor_6.0 Ensembl	2	170,452,702 - 170,460,754 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111195 ⟹ ENSRNOP00000078084

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	159,986,167 - 159,992,044 (-)	Ensembl
mRatBN7.2 Ensembl	2	157,687,535 - 157,696,709 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000127677 ⟹ ENSRNOP00000105388

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	159,978,765 - 159,992,333 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000158672 ⟹ ENSRNOP00000106933

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	159,980,776 - 159,996,342 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000162532 ⟹ ENSRNOP00000099054

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	159,973,029 - 159,996,342 (-)	Ensembl

RefSeq Acc Id:

NM_001107683 ⟹ NP_001101153

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	159,987,170 - 159,995,222 (-)	NCBI
mRatBN7.2	2	157,688,503 - 157,696,555 (-)	NCBI
Rnor_6.0	2	170,452,702 - 170,460,754 (-)	NCBI
Rnor_5.0	2	189,791,839 - 189,803,411 (-)	NCBI
RGSC_v3.4	2	163,703,843 - 163,711,895 (-)	RGD
Celera	2	151,947,474 - 151,955,526 (-)	RGD

Sequence:

show sequence

GCACAGCCTGCCTGTCATCTGGGGCAAGCACAGAGAGCAATGGTCCTGAGCCCACCATCGCCAG
CTTCACCGCGTTAGGTGCGCGCCCTGCTCTCCCATCGCTATGCAGCGACCATTTCCCTCAAAGT
CTAAAAGGTGGACCACTCTAAAAGGATTACAAGCGTGATTTGGTAGCCTTTCCGAAAGTTGGTG
GCTGGAAGAGGGGAAGATCCTGGGCGACAGAATGACGGATACAATGCAGCCTCGCGGAGAGTTT
GCCCCTCCCGCTGAGAAGCCCCTTGGAGCGAACCTCGGAGATCCTGAGCGCTCTGCACCATAGT
TTTGTTATCAACCAGGAACGATGAAGCCAACCATAACTGAGATGCTTCACAGAGGGAGAATGCT
GTGGATCATTCTTCTAAGCACAATTGCTCTAGGTTGGACTACCCCGATTCCCCTGATTGAGGAC
TCAGAGGAAATAGATGAGCCCTGTTTTGATCCATGCTACTGCGAAGTTAAAGAAAGCCTCTTTC
ACATACATTGTGACAGCAAAGGATTTACAAACATTAGTCAGATTACTGAATTCTGGTCAAGACC
CTTTAAACTGTATCTTCAGAGGAATTCGATGAGAAAATTGTACACAAATAGTTTTCTTCACTTG
AATAATGCTGTGTCCATTAACCTTGGGAACAATGCATTGCAGGACATTCAAACTGGAGCTTTTA
ATGGCCTTAAGATTTTAAAAAGACTATATCTCCATGAGAACAAACTAGATGTCTTCAGAAATGA
CACCTTCCTTGGCTTAGAAAGTCTGGAATATCTTCAGGCAGACTACAATGTCATTAAACGAATA
GAGAGTGGGGCATTTCGGAACCTAAGTAAATTGAGGGTTCTAATCTTAAATGATAATCTCATCC
CCGTGCTTCCAACCAATTTATTTAAAGCTGTTTCCTTAACCCATCTGGACCTTCGTGGAAACAG
GTTAAAAGTTCTGTTCTACCGTGGGATGCTGGATCACATTGGCAGAAGCCTGATGGAGCTCCAG
CTAGAAGAGAATCCTTGGAACTGTACCTGTGAGATTGTGCAGCTCAAGAGTTGGCTGGAGCGAA
TTCCTTACACAGCCCTGGTGGGAGACATCACCTGTGAGACACCTTTCCACTTCCATGGGAAGGA
TCTCCGTGAAATCAAGAAGACTGAACTCTGTCCACTCTTGTCTGACTCTGAGGTGGAGGCCAGT
CTGGGGATTCCCCACTTATCATCAAGCAAGGAGAATGCCTGGCCCACGAAACCCTCCTCTATGT
TATCTTCTGTCCATTTTACTGCTTCATCTGTTGAATATAAATCCTCTAATAAGCAGCCAAAACC
CACCAAACAGCCCCGAACACCCAGACCACCATCTACATCCCAGGCTTTATATCCTGGTCCAAAT
CAACCTCCTATTGCCCCCTATCAGACTAGACCACCCATTCCCATTATATGTCCTACTGGGTGTA
CATGTAATTTGCATATCAATGACCTTGGCTTGACTGTCAACTGCAAAGAACGAGGATTTAACAA
CATCTCTGAACTCCTTCCAAGGCCCTTGAATGCCAAGAAGCTGTACCTGAGTAGCAATCTTATT
CAGAAGATATACCGCTCCGATTTTTGGAATTTTTCTTCTTTGGATCTCTTGCACCTGGGGAACA
ATCGCATCTCCTACGTCCAGGATGGGGCTTTCATCAACCTGCCCAATCTGAAGAGTCTCTTTCT
CAATGGCAATGATATAGAAAAGCTGACACCAGGGATGTTCCGCGGTCTCCAGAGCTTGCATTAC
TTGTACTTCGAATTCAACGTCATCCGGGAAATCCAACCTGCAGCCTTCAGCCTCATGCCCAACT
TGAAGCTGCTATTTCTCAACAATAACTTGCTGAGGACCCTGCCAACTGATGCCTTTGCAGGCAC
ATCCCTGGCTCGGCTCAACTTGAGGAAGAACTACTTTCTCTACCTGCCAGTGGCTGGCGTCCTT
GAACACCTGAATGCCATTGTGCAGATAGATCTCAATGAGAATCCTTGGGACTGCACTTGTGACC
TAGTCCCCTTTAAGCAGTGGATCGAAACCATCAGCTCAGTCAGCGTAGTAGGTGATGTACTCTG
TAGGACCCCTGAGAACCTCACCCACCGTGATGTGCGCACTATTGAGCTGGAAGTTTTATGCCCG
GAGATGCTGCATATTGCCCAACCTGGACCATCCCCACCCCAGTCTGGAGATTACCACCCTAACG
GGGGACCGACAAGTGCATCACCTTATGACTTCTCTCCTCCCGGGGGCCCTGTGCCACTTTCTGT
GTTGATTCTCAGCCTGTTGGTTCTGTTCTTCTCAGCTGTCTTTGTTGCTGCAGGCCTCTTTGCC
TATGTGCTCCGTCGGCGTAGGAAGAAGCTACCCTTTAGAAGCAAGAGGCAGGAAGGTGTGGACC
TTACAGGAATCCAGATGCAATGCCACCGTCTGTTTGAGGACAGTGGGGGCAGTGGTGGTGGGAG
CGGAAGTGGAGGGCGACCAACTCTGTCCTCGCCAGAGAAAGCCCCTCCCGTGGGTCACGTGTAT
GAGTATATACCCCACCCAGTTACTCAAATGTGTAACAACCCCATCTATAAGCCTCGAGAAGAGG
AAGAAGTGGCTGCCTCAGCAGCACAGGACACAGGAGCTACAGACCGTGGAGGTCCTGGGACACA
GCCACCAGGAATGGGTGAGGTGCTCTTAGGAAGTGAGCAGTTTGCAGAAACACCCAAGGAAAAC
CACAGTAACTACCGGACCTTGCTGGAAAAAGAGAAGGAGTGGGCCCTGGCTGTTTCCAACTCTC
AACTCAACACCATAGTGACGGTGAACCATCACCACCCTCACCCTCACCACTCGGCTGTTGGTGG
GGTTTCAGGGGTAGGTGGAGGGACTGGGGGAGACTTGGCTGGGTTCCGCCACCATGAGAAGAAT
GGTGGGGTGGTGCTGTTTCCCCCTGGGGGAGGTTGTGGTGGTGGCAGTCTGCTACTAGAACGTG
AGAGGCCACAGCCTGCTCCATGCACAGTGGGATTTGTGGACTGTCTCTATGGCACAGTGCCCAA
ATTAAAGGAACTACATGTCCACCCCCCTGGCATGCAATATCCAGACTTACAGCAGGATGCCAGG
CTGAAAGAAACCCTTCTCTTCTCAGCTGGAAAGGGCTTCACAGACCACCAAACCCCCAAAAGTG
ATTACCTCGACTTAAGGGCCAAACTTCAAACTAAGCCGGATTACCTCGAAGTTCTGGAGAAAAC
AGCATACAGGTTCTAACAGAAAGAAGAAAATAAATTAGTGGCTTTGTTTTGATTTCCA

hide sequence

RefSeq Acc Id:

XM_006232490 ⟹ XP_006232552

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	159,983,650 - 159,993,865 (-)	NCBI
mRatBN7.2	2	157,680,067 - 157,695,187 (-)	NCBI
Rnor_6.0	2	170,449,182 - 170,457,881 (-)	NCBI
Rnor_5.0	2	189,791,839 - 189,803,411 (-)	NCBI

Sequence:

show sequence

GTATAGTCAAGGCTTCTTAGTGCTCGCTCCCGACCAAAGGCTAAGCGTGTTCCCCTACTTGGAG
CTCATTTTCATGATGGGAAACGCTGAAGGGTTTTCAACACACATTAAAAAACAAACAAAATACA
CAGCGCGAAAGAAATCCAAATCCCGCAGTGTGGTATGAGCCTGCCTTCCCCCCTGGTGCCCAAG
GGTGTAGGGTAACCGGGGAGAGCTGCTACAGAGGCGGCGCACCCAGCAGCAGCGGCGGAGCTGG
AAGCCTGCTGCAGCCTCATCTCCTCCCTCCTTTATTGAGGGTGCCAAGCGGCAATCCTGCATCC
TAAAGAAGCCCATTGAAGAGCCCATTGCATTCTCTGCACGTCTCAAGCTAGCTTTTTAATTTAT
TTTTTAGGGCCTTCCCCCCTCTCCTCAACCCCCCTAGCTTCGGCTTCTGCAAGAAGGGACTGGA
CAAGAGAGGATCCTTAAACTCAAGCTTTGTTTTCCTTGCTGCTTGTCTTTTCATTCTTTTCCAT
AGTCAGTGCTGAGAAACAAAAATAAAAACCAATATCCAAACGTCCTGCAAAAATAGTTTTGTTA
TCAACCAGGAACGATGAAGCCAACCATAACTGAGATGCTTCACAGAGGGAGAATGCTGTGGATC
ATTCTTCTAAGCACAATTGCTCTAGGTTGGACTACCCCGATTCCCCTGATTGAGGACTCAGAGG
AAATAGATGAGCCCTGTTTTGATCCATGCTACTGCGAAGTTAAAGAAAGCCTCTTTCACATACA
TTGTGACAGCAAAGGATTTACAAACATTAGTCAGATTACTGAATTCTGGTCAAGACCCTTTAAA
CTGTATCTTCAGAGGAATTCGATGAGAAAATTGTACACAAATAGTTTTCTTCACTTGAATAATG
CTGTGTCCATTAACCTTGGGAACAATGCATTGCAGGACATTCAAACTGGAGCTTTTAATGGCCT
TAAGATTTTAAAAAGACTATATCTCCATGAGAACAAACTAGATGTCTTCAGAAATGACACCTTC
CTTGGCTTAGAAAGTCTGGAATATCTTCAGGCAGACTACAATGTCATTAAACGAATAGAGAGTG
GGGCATTTCGGAACCTAAGTAAATTGAGGGTTCTAATCTTAAATGATAATCTCATCCCCGTGCT
TCCAACCAATTTATTTAAAGCTGTTTCCTTAACCCATCTGGACCTTCGTGGAAACAGGTTAAAA
GTTCTGTTCTACCGTGGGATGCTGGATCACATTGGCAGAAGCCTGATGGAGCTCCAGCTAGAAG
AGAATCCTTGGAACTGTACCTGTGAGATTGTGCAGCTCAAGAGTTGGCTGGAGCGAATTCCTTA
CACAGCCCTGGTGGGAGACATCACCTGTGAGACACCTTTCCACTTCCATGGGAAGGATCTCCGT
GAAATCAAGAAGACTGAACTCTGTCCACTCTTGTCTGACTCTGAGGTGGAGGCCAGTCTGGGGA
TTCCCCACTTATCATCAAGCAAGGAGAATGCCTGGCCCACGAAACCCTCCTCTATGTTATCTTC
TGTCCATTTTACTGCTTCATCTGTTGAATATAAATCCTCTAATAAGCAGCCAAAACCCACCAAA
CAGCCCCGAACACCCAGACCACCATCTACATCCCAGGCTTTATATCCTGGTCCAAATCAACCTC
CTATTGCCCCCTATCAGACTAGACCACCCATTCCCATTATATGTCCTACTGGGTGTACATGTAA
TTTGCATATCAATGACCTTGGCTTGACTGTCAACTGCAAAGAACGAGGATTTAACAACATCTCT
GAACTCCTTCCAAGGCCCTTGAATGCCAAGAAGCTGTACCTGAGTAGCAATCTTATTCAGAAGA
TATACCGCTCCGATTTTTGGAATTTTTCTTCTTTGGATCTCTTGCACCTGGGGAACAATCGCAT
CTCCTACGTCCAGGATGGGGCTTTCATCAACCTGCCCAATCTGAAGAGTCTCTTTCTCAATGGC
AATGATATAGAAAAGCTGACACCAGGGATGTTCCGCGGTCTCCAGAGCTTGCATTACTTGTACT
TCGAATTCAACGTCATCCGGGAAATCCAACCTGCAGCCTTCAGCCTCATGCCCAACTTGAAGCT
GCTATTTCTCAACAATAACTTGCTGAGGACCCTGCCAACTGATGCCTTTGCAGGCACATCCCTG
GCTCGGCTCAACTTGAGGAAGAACTACTTTCTCTACCTGCCAGTGGCTGGCGTCCTTGAACACC
TGAATGCCATTGTGCAGATAGATCTCAATGAGAATCCTTGGGACTGCACTTGTGACCTAGTCCC
CTTTAAGCAGTGGATCGAAACCATCAGCTCAGTCAGCGTAGTAGGTGATGTACTCTGTAGGACC
CCTGAGAACCTCACCCACCGTGATGTGCGCACTATTGAGCTGGAAGTTTTATGCCCGGAGATGC
TGCATATTGCCCAACCTGGACCATCCCCACCCCAGTCTGGAGATTACCACCCTAACGGGGGACC
GACAAGTGCATCACCTTATGACTTCTCTCCTCCCGGGGGCCCTGTGCCACTTTCTGTGTTGATT
CTCAGCCTGTTGGTTCTGTTCTTCTCAGCTGTCTTTGTTGCTGCAGGCCTCTTTGCCTATGTGC
TCCGTCGGCGTAGGAAGAAGCTACCCTTTAGAAGCAAGAGGCAGGAAGGTGTGGACCTTACAGG
AATCCAGATGCAATGCCACCGTCTGTTTGAGGACAGTGGGGGCAGTGGTGGTGGGAGCGGAAGT
GGAGGGCGACCAACTCTGTCCTCGCCAGAGAAAGCCCCTCCCGTGGGTCACGTGTATGAGTATA
TACCCCACCCAGTTACTCAAATGTGTAACAACCCCATCTATAAGCCTCGAGAAGAGGAAGAAGT
GGCTGCCTCAGCAGCACAGGACACAGGAGCTACAGACCGTGGAGGTCCTGGGACACAGCCACCA
GGAATGGGTGAGGTGCTCTTAGGAAGTGAGCAGTTTGCAGAAACACCCAAGGAAAACCACAGTA
ACTACCGGACCTTGCTGGAAAAAGAGAAGGAGTGGGCCCTGGCTGTTTCCAACTCTCAACTCAA
CACCATAGTGACGGTGAACCATCACCACCCTCACCCTCACCACTCGGCTGTTGGTGGGGTTTCA
GGGGTAGGTGGAGGGACTGGGGGAGACTTGGCTGGGTTCCGCCACCATGAGAAGAATGGTGGGG
TGGTGCTGTTTCCCCCTGGGGGAGGTTGTGGTGGTGGCAGTCTGCTACTAGAACGTGAGAGGCC
ACAGCCTGCTCCATGCACAGTGGGATTTGTGGACTGTCTCTATGGCACAGTGCCCAAATTAAAG
GAACTACATGTCCACCCCCCTGGCATGCAATATCCAGACTTACAGCAGGATGCCAGGCTGAAAG
AAACCCTTCTCTTCTCAGCTGGAAAGGGCTTCACAGACCACCAAACCCCCAAAAGTGATTACCT
CGACTTAAGGGCCAAACTTCAAACTAAGCCGGATTACCTCGAAGTTCTGGAGAAAACAGCATAC
AGGTTCTAACAGAAAGAAGAAAATAAATTAGTGGCTTTGTTTTGATTTCCAAAAGAAAAGGAAA
ATAAAAAGAAATATATCCCCGGCTCCCATTATACTTGTCCCAATAACTACATCCTTACAATTTC
CCCTGCCCAAGACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCCCCCCT
CTCAGATGCGATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCGCAGAC
TTTTGCCAGCAAATGTTATCATTATTTTTTTATACTGAAACTCGAGACTTTGACTGTGCCATGT
GTGAGGTATATTGGGGATCGTTGTATTGATCCTAAATGAGTAAAATTCAATGTGTCTTTTTATT
TCCTTTAACTTTTCTTCCCTTTAGTTGCAGTTGGAAAGGGAGGGGGGAGGTTGACATTTATGGC
TTTCTCTCCTTTTCCCATCATGGCACAGGTTCTGTACATGTATAAACAATGCAGTTTGCTGCAT
GCTTGAAAACTGCAGGATGGGGAGGGAGGGGCGGGTCTTGCTCGAATGTTCTCACACTGTTCTC
TCACACACATATTCATGTGCACACAACAAATCCCTACATACACGTAGGTCCCACAGCCTGCACT
GGGTGCAGTACACACACACACACACACACACACACACACACACATACTCCTCCCCTGCAACTTA
ATATGCTTAGTTCTGGTTTAATCTATTTCTTCCTCTACATAGCTCCACGCGCCCTTCACTCGTA
GTGTACAGCTCACAGCATCTCTCCTACCACCCTGGGAAAAGTCACATTCGAGGCTGGATCCTAC
TGAAGCCAAGGCTTGTTGGTTTAACAGCTGGAGACACACCTAGGGTTGAGCACCCTCCTCGTGA
CATTTCATCCTGATGTCAAGATTTTTGAGAACATCTGCACTTTCTTATATATATATATATATAT
ATATAAATATATATAAATATATGATATTAAAAAATAAAAGAGCAACTGGGTATATATCACTAAC
AGCTTTGTAGGAAGCACTTTTAATGTTTTCTCTCTCACACACAAAGATTCAAAGGAAATGTGCA
TATATTTATTCTGTAATTTCAGTGATTATAAATTGTAAAGGTAATGTTTAATCATTGTATAGTG
ATTATGCGTCTGGTATAGCTTTCCTAATAAAATGTTTTTGAAAAACATAATACATTATATATAG
AGGATACAAAGCTTCAATTTAACCTTCAGCTATGCCATGCTTTTCGTATTCCCGTTTAAAAATG
TTATTTTATTTGGTATACAGAAAGCTAAATGATTAACAAGTTCGATGCACTGTGATATTGATAA
ATATTATTATTATAATACCTTATCCATATTCCATATTAGGATTAAATTGGGGCTTGGATATTCT
GATCTGTTTTTCATGGGTTATACATTTTAAATTCAGTTTCCCAGTGAGGCACTGAGAAATAGGT
GGGGTGTGACTGGGAGAAAACAAAGTGACTGGATGAGGAAATATAGGACTAATCTGGATGAGAT
AATCGAGCGTCTGTGGGTTTCAGACAAATGACACGAAGGAACAGAGAAACGATGTAGCTCTCCT
TTAAATAAAAACAAGCACTAAAATTAGATCCAAGAGCAACTTAGGTACAACAGCAATCTTCATG
CTCAAACACAGCACCAGAAAAGCCTAGGACTTCAAGTCAATGAAGTTTTAGAATATCTGTTACC
TGCTAAAGTTGTGATTTTTATGTTTGGACTTTTTTTTTCCCTCAACCACTCACAGAAAATGGAC
CCGGAAATGCTTGAGTTAAGAACCTTGATTATGATTAAGTTTCATTTTTCTGTATGACGTTAAA
AGATGTTTCAAAGTTTCTTGAGGATACGTTAAGTTATGATCCATTTCATGTGAGCAGAACACCA
AAGAAAATTGAAATTTAGGACGCAAATGAGAGATAGAGGTACTTACCGCATTCAGCCAGTAGAT
GGCAGCAGAGCTTCAGCGATCTCCAGACACAGCCATCACTGAAGTGTGGAGTGAGGTTTGGATT
CCTTAAAGTTGCCCTTGGAAATGATCATTACACATTGAATGTAGTTCCCCATGAGTCGCTGAGG
CCTTACATTCCATCATTTTCTCATAGAAAAGGAGAATGCCATCAGTTTCTAGGTCCGTGTGGTA
TATGCATTCAGGGTATTGGATTTAAAAGATGGGGGAAAAGTGAATGTCTTGAACTTGTTAATGT
AACCATTAACTACATGGAACTATTAGTGTGGACATACAGAGATAAAACACACAAGTACATCAAT
ATAAAATGCACGCTTCAGGGATTCTTTGCATTTAATATTAGACATATGTAATTTCTGTCCTCAA
TTATTCATTCTATTTTGGAGTCTATTTAGAAAGCCCATATAACTAATTACTGTCTCTTTATGTA
AAATGTCGAAATGGAGCTCTCCTTATGTAGTAGAGTTGAACACGTTACAAAACAGATGCCTTTT
TGTAAGCTTTCTATAGATCACGTTCACTAGATAGTTCATCTTCCGTGTTCTTTCTAATTATCTT
TCCCTATTACTAATTTTTTAAAATGACATTACTGCTCTTAGAGGGTTTACAACCAGACTTATGG
AGTCACTGTAAACTACAGTGACTATTTACCTTCCAATTCTTCTTAATCAATCATTCTGGCGAAC
ACAAGAAATAAGAGCAAATACCTAGATCTTTCAAATGCTAACAATGCCTTCCTAGAGAACTGTG
GGGCCACGCAACACAGTCTATTAAACGTATCAGGTTAAATGTCAACCCTAAGGACCCTGGTGCT
TTCGACATTGGAACATAAGTCTTCATAAACCTCATCGAATTAAAATATAAATTGATAATTGTAA
TATTTATATTTTATTTATCAAATATTGAGGTAAGACTGTCTAATCTTAAAATTCACCCTTGAAT
GACTAATAAATTCATTTATATAGTGAGAACAAATTTATATGAGAATGAAATTTTGTATTTAAGA
GGACAATATTTTGCTTTCATGGATTTTTATATCCCCTGACTCAGTTACTTAATTTAATTTTGCA
CTAAAATTGAGTTAAGAAACTTTAGTTTATAATAACATATTATTTCCTTTAAATGTCATTAATC
TTACCCCAAAAGTATGAATTGGCATTTGCTTCATGTTTCTTATTGAAGAAAATGACTTATTTTT
TTACAGAATAGGTAACTAAATCCCTTCATAGCAATGCTTTGCTGCTGAGTTCGACCAAGATTTC
ACATGTATTTGCTTTTCTTCATTACTCTTTTTATTATTAATTACAATAATAGTATTTGGACATT
GCAAATGCACTGTGTTGTCCCTTTAATGCTGACATGATTAGGGTAAAACTATTGCAGGTGATCA
GTTTAATTCAGAATACTATTCAAATGTTAGATATCATTATATGGTATTATTTATGTAGATGCTT
TTATATTTTGAATAGAGATATATTACTTCATCAAATTGCAAAATTATTTAAAATAGGATGGTAA
CTGCAATATTTTTAATAAAAGTTCAGAGAGAAGATAACAAAGAAACTTTAA

hide sequence

RefSeq Acc Id:

XM_008761091 ⟹ XP_008759313

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	159,983,650 - 159,996,194 (-)	NCBI
mRatBN7.2	2	157,680,067 - 157,697,404 (-)	NCBI
Rnor_6.0	2	170,449,182 - 170,461,513 (-)	NCBI

Sequence:

show sequence

CGTTTTGTATTGCGCTTCTAGTCCCTGACCTGGCGCTCCCCAGTTTAGAGGCAGACGTTCGTTT
TGTTATCAACCAGGAACGATGAAGCCAACCATAACTGAGATGCTTCACAGAGGGAGAATGCTGT
GGATCATTCTTCTAAGCACAATTGCTCTAGGTTGGACTACCCCGATTCCCCTGATTGAGGACTC
AGAGGAAATAGATGAGCCCTGTTTTGATCCATGCTACTGCGAAGTTAAAGAAAGCCTCTTTCAC
ATACATTGTGACAGCAAAGGATTTACAAACATTAGTCAGATTACTGAATTCTGGTCAAGACCCT
TTAAACTGTATCTTCAGAGGAATTCGATGAGAAAATTGTACACAAATAGTTTTCTTCACTTGAA
TAATGCTGTGTCCATTAACCTTGGGAACAATGCATTGCAGGACATTCAAACTGGAGCTTTTAAT
GGCCTTAAGATTTTAAAAAGACTATATCTCCATGAGAACAAACTAGATGTCTTCAGAAATGACA
CCTTCCTTGGCTTAGAAAGTCTGGAATATCTTCAGGCAGACTACAATGTCATTAAACGAATAGA
GAGTGGGGCATTTCGGAACCTAAGTAAATTGAGGGTTCTAATCTTAAATGATAATCTCATCCCC
GTGCTTCCAACCAATTTATTTAAAGCTGTTTCCTTAACCCATCTGGACCTTCGTGGAAACAGGT
TAAAAGTTCTGTTCTACCGTGGGATGCTGGATCACATTGGCAGAAGCCTGATGGAGCTCCAGCT
AGAAGAGAATCCTTGGAACTGTACCTGTGAGATTGTGCAGCTCAAGAGTTGGCTGGAGCGAATT
CCTTACACAGCCCTGGTGGGAGACATCACCTGTGAGACACCTTTCCACTTCCATGGGAAGGATC
TCCGTGAAATCAAGAAGACTGAACTCTGTCCACTCTTGTCTGACTCTGAGGTGGAGGCCAGTCT
GGGGATTCCCCACTTATCATCAAGCAAGGAGAATGCCTGGCCCACGAAACCCTCCTCTATGTTA
TCTTCTGTCCATTTTACTGCTTCATCTGTTGAATATAAATCCTCTAATAAGCAGCCAAAACCCA
CCAAACAGCCCCGAACACCCAGACCACCATCTACATCCCAGGCTTTATATCCTGGTCCAAATCA
ACCTCCTATTGCCCCCTATCAGACTAGACCACCCATTCCCATTATATGTCCTACTGGGTGTACA
TGTAATTTGCATATCAATGACCTTGGCTTGACTGTCAACTGCAAAGAACGAGGATTTAACAACA
TCTCTGAACTCCTTCCAAGGCCCTTGAATGCCAAGAAGCTGTACCTGAGTAGCAATCTTATTCA
GAAGATATACCGCTCCGATTTTTGGAATTTTTCTTCTTTGGATCTCTTGCACCTGGGGAACAAT
CGCATCTCCTACGTCCAGGATGGGGCTTTCATCAACCTGCCCAATCTGAAGAGTCTCTTTCTCA
ATGGCAATGATATAGAAAAGCTGACACCAGGGATGTTCCGCGGTCTCCAGAGCTTGCATTACTT
GTACTTCGAATTCAACGTCATCCGGGAAATCCAACCTGCAGCCTTCAGCCTCATGCCCAACTTG
AAGCTGCTATTTCTCAACAATAACTTGCTGAGGACCCTGCCAACTGATGCCTTTGCAGGCACAT
CCCTGGCTCGGCTCAACTTGAGGAAGAACTACTTTCTCTACCTGCCAGTGGCTGGCGTCCTTGA
ACACCTGAATGCCATTGTGCAGATAGATCTCAATGAGAATCCTTGGGACTGCACTTGTGACCTA
GTCCCCTTTAAGCAGTGGATCGAAACCATCAGCTCAGTCAGCGTAGTAGGTGATGTACTCTGTA
GGACCCCTGAGAACCTCACCCACCGTGATGTGCGCACTATTGAGCTGGAAGTTTTATGCCCGGA
GATGCTGCATATTGCCCAACCTGGACCATCCCCACCCCAGTCTGGAGATTACCACCCTAACGGG
GGACCGACAAGTGCATCACCTTATGACTTCTCTCCTCCCGGGGGCCCTGTGCCACTTTCTGTGT
TGATTCTCAGCCTGTTGGTTCTGTTCTTCTCAGCTGTCTTTGTTGCTGCAGGCCTCTTTGCCTA
TGTGCTCCGTCGGCGTAGGAAGAAGCTACCCTTTAGAAGCAAGAGGCAGGAAGGTGTGGACCTT
ACAGGAATCCAGATGCAATGCCACCGTCTGTTTGAGGACAGTGGGGGCAGTGGTGGTGGGAGCG
GAAGTGGAGGGCGACCAACTCTGTCCTCGCCAGAGAAAGCCCCTCCCGTGGGTCACGTGTATGA
GTATATACCCCACCCAGTTACTCAAATGTGTAACAACCCCATCTATAAGCCTCGAGAAGAGGAA
GAAGTGGCTGCCTCAGCAGCACAGGACACAGGAGCTACAGACCGTGGAGGTCCTGGGACACAGC
CACCAGGAATGGGTGAGGTGCTCTTAGGAAGTGAGCAGTTTGCAGAAACACCCAAGGAAAACCA
CAGTAACTACCGGACCTTGCTGGAAAAAGAGAAGGAGTGGGCCCTGGCTGTTTCCAACTCTCAA
CTCAACACCATAGTGACGGTGAACCATCACCACCCTCACCCTCACCACTCGGCTGTTGGTGGGG
TTTCAGGGGTAGGTGGAGGGACTGGGGGAGACTTGGCTGGGTTCCGCCACCATGAGAAGAATGG
TGGGGTGGTGCTGTTTCCCCCTGGGGGAGGTTGTGGTGGTGGCAGTCTGCTACTAGAACGTGAG
AGGCCACAGCCTGCTCCATGCACAGTGGGATTTGTGGACTGTCTCTATGGCACAGTGCCCAAAT
TAAAGGAACTACATGTCCACCCCCCTGGCATGCAATATCCAGACTTACAGCAGGATGCCAGGCT
GAAAGAAACCCTTCTCTTCTCAGCTGGAAAGGGCTTCACAGACCACCAAACCCCCAAAAGTGAT
TACCTCGACTTAAGGGCCAAACTTCAAACTAAGCCGGATTACCTCGAAGTTCTGGAGAAAACAG
CATACAGGTTCTAACAGAAAGAAGAAAATAAATTAGTGGCTTTGTTTTGATTTCCAAAAGAAAA
GGAAAATAAAAAGAAATATATCCCCGGCTCCCATTATACTTGTCCCAATAACTACATCCTTACA
ATTTCCCCTGCCCAAGACAGAACTGAAACGCATGATAACTAGAGAATACAAAAGTGTGCTCCCC
CCCCTCTCAGATGCGATTTTGAGGAAGGGCCATACTCAGATCATTAATCAATGAAGTGCCTTCG
CAGACTTTTGCCAGCAAATGTTATCATTATTTTTTTATACTGAAACTCGAGACTTTGACTGTGC
CATGTGTGAGGTATATTGGGGATCGTTGTATTGATCCTAAATGAGTAAAATTCAATGTGTCTTT
TTATTTCCTTTAACTTTTCTTCCCTTTAGTTGCAGTTGGAAAGGGAGGGGGGAGGTTGACATTT
ATGGCTTTCTCTCCTTTTCCCATCATGGCACAGGTTCTGTACATGTATAAACAATGCAGTTTGC
TGCATGCTTGAAAACTGCAGGATGGGGAGGGAGGGGCGGGTCTTGCTCGAATGTTCTCACACTG
TTCTCTCACACACATATTCATGTGCACACAACAAATCCCTACATACACGTAGGTCCCACAGCCT
GCACTGGGTGCAGTACACACACACACACACACACACACACACACACACATACTCCTCCCCTGCA
ACTTAATATGCTTAGTTCTGGTTTAATCTATTTCTTCCTCTACATAGCTCCACGCGCCCTTCAC
TCGTAGTGTACAGCTCACAGCATCTCTCCTACCACCCTGGGAAAAGTCACATTCGAGGCTGGAT
CCTACTGAAGCCAAGGCTTGTTGGTTTAACAGCTGGAGACACACCTAGGGTTGAGCACCCTCCT
CGTGACATTTCATCCTGATGTCAAGATTTTTGAGAACATCTGCACTTTCTTATATATATATATA
TATATATATAAATATATATAAATATATGATATTAAAAAATAAAAGAGCAACTGGGTATATATCA
CTAACAGCTTTGTAGGAAGCACTTTTAATGTTTTCTCTCTCACACACAAAGATTCAAAGGAAAT
GTGCATATATTTATTCTGTAATTTCAGTGATTATAAATTGTAAAGGTAATGTTTAATCATTGTA
TAGTGATTATGCGTCTGGTATAGCTTTCCTAATAAAATGTTTTTGAAAAACATAATACATTATA
TATAGAGGATACAAAGCTTCAATTTAACCTTCAGCTATGCCATGCTTTTCGTATTCCCGTTTAA
AAATGTTATTTTATTTGGTATACAGAAAGCTAAATGATTAACAAGTTCGATGCACTGTGATATT
GATAAATATTATTATTATAATACCTTATCCATATTCCATATTAGGATTAAATTGGGGCTTGGAT
ATTCTGATCTGTTTTTCATGGGTTATACATTTTAAATTCAGTTTCCCAGTGAGGCACTGAGAAA
TAGGTGGGGTGTGACTGGGAGAAAACAAAGTGACTGGATGAGGAAATATAGGACTAATCTGGAT
GAGATAATCGAGCGTCTGTGGGTTTCAGACAAATGACACGAAGGAACAGAGAAACGATGTAGCT
CTCCTTTAAATAAAAACAAGCACTAAAATTAGATCCAAGAGCAACTTAGGTACAACAGCAATCT
TCATGCTCAAACACAGCACCAGAAAAGCCTAGGACTTCAAGTCAATGAAGTTTTAGAATATCTG
TTACCTGCTAAAGTTGTGATTTTTATGTTTGGACTTTTTTTTTCCCTCAACCACTCACAGAAAA
TGGACCCGGAAATGCTTGAGTTAAGAACCTTGATTATGATTAAGTTTCATTTTTCTGTATGACG
TTAAAAGATGTTTCAAAGTTTCTTGAGGATACGTTAAGTTATGATCCATTTCATGTGAGCAGAA
CACCAAAGAAAATTGAAATTTAGGACGCAAATGAGAGATAGAGGTACTTACCGCATTCAGCCAG
TAGATGGCAGCAGAGCTTCAGCGATCTCCAGACACAGCCATCACTGAAGTGTGGAGTGAGGTTT
GGATTCCTTAAAGTTGCCCTTGGAAATGATCATTACACATTGAATGTAGTTCCCCATGAGTCGC
TGAGGCCTTACATTCCATCATTTTCTCATAGAAAAGGAGAATGCCATCAGTTTCTAGGTCCGTG
TGGTATATGCATTCAGGGTATTGGATTTAAAAGATGGGGGAAAAGTGAATGTCTTGAACTTGTT
AATGTAACCATTAACTACATGGAACTATTAGTGTGGACATACAGAGATAAAACACACAAGTACA
TCAATATAAAATGCACGCTTCAGGGATTCTTTGCATTTAATATTAGACATATGTAATTTCTGTC
CTCAATTATTCATTCTATTTTGGAGTCTATTTAGAAAGCCCATATAACTAATTACTGTCTCTTT
ATGTAAAATGTCGAAATGGAGCTCTCCTTATGTAGTAGAGTTGAACACGTTACAAAACAGATGC
CTTTTTGTAAGCTTTCTATAGATCACGTTCACTAGATAGTTCATCTTCCGTGTTCTTTCTAATT
ATCTTTCCCTATTACTAATTTTTTAAAATGACATTACTGCTCTTAGAGGGTTTACAACCAGACT
TATGGAGTCACTGTAAACTACAGTGACTATTTACCTTCCAATTCTTCTTAATCAATCATTCTGG
CGAACACAAGAAATAAGAGCAAATACCTAGATCTTTCAAATGCTAACAATGCCTTCCTAGAGAA
CTGTGGGGCCACGCAACACAGTCTATTAAACGTATCAGGTTAAATGTCAACCCTAAGGACCCTG
GTGCTTTCGACATTGGAACATAAGTCTTCATAAACCTCATCGAATTAAAATATAAATTGATAAT
TGTAATATTTATATTTTATTTATCAAATATTGAGGTAAGACTGTCTAATCTTAAAATTCACCCT
TGAATGACTAATAAATTCATTTATATAGTGAGAACAAATTTATATGAGAATGAAATTTTGTATT
TAAGAGGACAATATTTTGCTTTCATGGATTTTTATATCCCCTGACTCAGTTACTTAATTTAATT
TTGCACTAAAATTGAGTTAAGAAACTTTAGTTTATAATAACATATTATTTCCTTTAAATGTCAT
TAATCTTACCCCAAAAGTATGAATTGGCATTTGCTTCATGTTTCTTATTGAAGAAAATGACTTA
TTTTTTTACAGAATAGGTAACTAAATCCCTTCATAGCAATGCTTTGCTGCTGAGTTCGACCAAG
ATTTCACATGTATTTGCTTTTCTTCATTACTCTTTTTATTATTAATTACAATAATAGTATTTGG
ACATTGCAAATGCACTGTGTTGTCCCTTTAATGCTGACATGATTAGGGTAAAACTATTGCAGGT
GATCAGTTTAATTCAGAATACTATTCAAATGTTAGATATCATTATATGGTATTATTTATGTAGA
TGCTTTTATATTTTGAATAGAGATATATTACTTCATCAAATTGCAAAATTATTTAAAATAGGAT
GGTAACTGCAATATTTTTAATAAAAGTTCAGAGAGAAGATAACAAAGAAACTTTAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101153	(Get FASTA)	NCBI Sequence Viewer
	NP_001426375	(Get FASTA)	NCBI Sequence Viewer
	NP_001426376	(Get FASTA)	NCBI Sequence Viewer
	XP_006232552	(Get FASTA)	NCBI Sequence Viewer
	XP_008759313	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM00893	(Get FASTA)	NCBI Sequence Viewer
	EDM00894	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000013009.4
	ENSRNOP00000078084.1
	ENSRNOP00000099054
	ENSRNOP00000099054.1
	ENSRNOP00000105388
	ENSRNOP00000105388.1
	ENSRNOP00000106933
	ENSRNOP00000106933.1

RefSeq Acc Id:	NP_001101153 ⟸ NM_001107683
- Peptide Label:	precursor
- UniProtKB:	D4A062 (UniProtKB/TrEMBL), A6J5P5 (UniProtKB/TrEMBL), A0A8I5Y6W5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKPTITEMLHRGRMLWIILLSTIALGWTTPIPLIEDSEEIDEPCFDPCYCEVKESLFHIHCDSK GFTNISQITEFWSRPFKLYLQRNSMRKLYTNSFLHLNNAVSINLGNNALQDIQTGAFNGLKILK RLYLHENKLDVFRNDTFLGLESLEYLQADYNVIKRIESGAFRNLSKLRVLILNDNLIPVLPTNL FKAVSLTHLDLRGNRLKVLFYRGMLDHIGRSLMELQLEENPWNCTCEIVQLKSWLERIPYTALV GDITCETPFHFHGKDLREIKKTELCPLLSDSEVEASLGIPHLSSSKENAWPTKPSSMLSSVHFT ASSVEYKSSNKQPKPTKQPRTPRPPSTSQALYPGPNQPPIAPYQTRPPIPIICPTGCTCNLHIN DLGLTVNCKERGFNNISELLPRPLNAKKLYLSSNLIQKIYRSDFWNFSSLDLLHLGNNRISYVQ DGAFINLPNLKSLFLNGNDIEKLTPGMFRGLQSLHYLYFEFNVIREIQPAAFSLMPNLKLLFLN NNLLRTLPTDAFAGTSLARLNLRKNYFLYLPVAGVLEHLNAIVQIDLNENPWDCTCDLVPFKQW IETISSVSVVGDVLCRTPENLTHRDVRTIELEVLCPEMLHIAQPGPSPPQSGDYHPNGGPTSAS PYDFSPPGGPVPLSVLILSLLVLFFSAVFVAAGLFAYVLRRRRKKLPFRSKRQEGVDLTGIQMQ CHRLFEDSGGSGGGSGSGGRPTLSSPEKAPPVGHVYEYIPHPVTQMCNNPIYKPREEEEVAASA AQDTGATDRGGPGTQPPGMGEVLLGSEQFAETPKENHSNYRTLLEKEKEWALAVSNSQLNTIVT VNHHHPHPHHSAVGGVSGVGGGTGGDLAGFRHHEKNGGVVLFPPGGGCGGGSLLLERERPQPAP CTVGFVDCLYGTVPKLKELHVHPPGMQYPDLQQDARLKETLLFSAGKGFTDHQTPKSDYLDLRA KLQTKPDYLEVLEKTAYRF hide sequence

RefSeq Acc Id:

XP_006232552 ⟸ XM_006232490

- Peptide Label:

isoform X1

- Sequence:

show sequence

MKPTITEMLHRGRMLWIILLSTIALGWTTPIPLIEDSEEIDEPCFDPCYCEVKESLFHIHCDSK
GFTNISQITEFWSRPFKLYLQRNSMRKLYTNSFLHLNNAVSINLGNNALQDIQTGAFNGLKILK
RLYLHENKLDVFRNDTFLGLESLEYLQADYNVIKRIESGAFRNLSKLRVLILNDNLIPVLPTNL
FKAVSLTHLDLRGNRLKVLFYRGMLDHIGRSLMELQLEENPWNCTCEIVQLKSWLERIPYTALV
GDITCETPFHFHGKDLREIKKTELCPLLSDSEVEASLGIPHLSSSKENAWPTKPSSMLSSVHFT
ASSVEYKSSNKQPKPTKQPRTPRPPSTSQALYPGPNQPPIAPYQTRPPIPIICPTGCTCNLHIN
DLGLTVNCKERGFNNISELLPRPLNAKKLYLSSNLIQKIYRSDFWNFSSLDLLHLGNNRISYVQ
DGAFINLPNLKSLFLNGNDIEKLTPGMFRGLQSLHYLYFEFNVIREIQPAAFSLMPNLKLLFLN
NNLLRTLPTDAFAGTSLARLNLRKNYFLYLPVAGVLEHLNAIVQIDLNENPWDCTCDLVPFKQW
IETISSVSVVGDVLCRTPENLTHRDVRTIELEVLCPEMLHIAQPGPSPPQSGDYHPNGGPTSAS
PYDFSPPGGPVPLSVLILSLLVLFFSAVFVAAGLFAYVLRRRRKKLPFRSKRQEGVDLTGIQMQ
CHRLFEDSGGSGGGSGSGGRPTLSSPEKAPPVGHVYEYIPHPVTQMCNNPIYKPREEEEVAASA
AQDTGATDRGGPGTQPPGMGEVLLGSEQFAETPKENHSNYRTLLEKEKEWALAVSNSQLNTIVT
VNHHHPHPHHSAVGGVSGVGGGTGGDLAGFRHHEKNGGVVLFPPGGGCGGGSLLLERERPQPAP
CTVGFVDCLYGTVPKLKELHVHPPGMQYPDLQQDARLKETLLFSAGKGFTDHQTPKSDYLDLRA
KLQTKPDYLEVLEKTAYRF

hide sequence

RefSeq Acc Id:

XP_008759313 ⟸ XM_008761091

- Peptide Label:

isoform X1

- Sequence:

show sequence

MKPTITEMLHRGRMLWIILLSTIALGWTTPIPLIEDSEEIDEPCFDPCYCEVKESLFHIHCDSK
GFTNISQITEFWSRPFKLYLQRNSMRKLYTNSFLHLNNAVSINLGNNALQDIQTGAFNGLKILK
RLYLHENKLDVFRNDTFLGLESLEYLQADYNVIKRIESGAFRNLSKLRVLILNDNLIPVLPTNL
FKAVSLTHLDLRGNRLKVLFYRGMLDHIGRSLMELQLEENPWNCTCEIVQLKSWLERIPYTALV
GDITCETPFHFHGKDLREIKKTELCPLLSDSEVEASLGIPHLSSSKENAWPTKPSSMLSSVHFT
ASSVEYKSSNKQPKPTKQPRTPRPPSTSQALYPGPNQPPIAPYQTRPPIPIICPTGCTCNLHIN
DLGLTVNCKERGFNNISELLPRPLNAKKLYLSSNLIQKIYRSDFWNFSSLDLLHLGNNRISYVQ
DGAFINLPNLKSLFLNGNDIEKLTPGMFRGLQSLHYLYFEFNVIREIQPAAFSLMPNLKLLFLN
NNLLRTLPTDAFAGTSLARLNLRKNYFLYLPVAGVLEHLNAIVQIDLNENPWDCTCDLVPFKQW
IETISSVSVVGDVLCRTPENLTHRDVRTIELEVLCPEMLHIAQPGPSPPQSGDYHPNGGPTSAS
PYDFSPPGGPVPLSVLILSLLVLFFSAVFVAAGLFAYVLRRRRKKLPFRSKRQEGVDLTGIQMQ
CHRLFEDSGGSGGGSGSGGRPTLSSPEKAPPVGHVYEYIPHPVTQMCNNPIYKPREEEEVAASA
AQDTGATDRGGPGTQPPGMGEVLLGSEQFAETPKENHSNYRTLLEKEKEWALAVSNSQLNTIVT
VNHHHPHPHHSAVGGVSGVGGGTGGDLAGFRHHEKNGGVVLFPPGGGCGGGSLLLERERPQPAP
CTVGFVDCLYGTVPKLKELHVHPPGMQYPDLQQDARLKETLLFSAGKGFTDHQTPKSDYLDLRA
KLQTKPDYLEVLEKTAYRF

hide sequence

Ensembl Acc Id:

ENSRNOP00000013009 ⟸ ENSRNOT00000013009

Ensembl Acc Id:

ENSRNOP00000078084 ⟸ ENSRNOT00000111195

Ensembl Acc Id:

ENSRNOP00000099054 ⟸ ENSRNOT00000162532

Ensembl Acc Id:

ENSRNOP00000106933 ⟸ ENSRNOT00000158672

Ensembl Acc Id:

ENSRNOP00000105388 ⟸ ENSRNOT00000127677

Protein Domains

LRRCT

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A062-F1-model_v2	AlphaFold	D4A062	1-979	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310506	AgrOrtholog
BioCyc Gene	G2FUF-52800	BioCyc
Ensembl Genes	ENSRNOG00000009821	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000013009.7	UniProtKB/TrEMBL
	ENSRNOT00000111195.2	UniProtKB/TrEMBL
	ENSRNOT00000127677	ENTREZGENE
	ENSRNOT00000127677.1	UniProtKB/TrEMBL
	ENSRNOT00000158672	ENTREZGENE
	ENSRNOT00000158672.1	UniProtKB/TrEMBL
	ENSRNOT00000162532	ENTREZGENE
	ENSRNOT00000162532.1	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
InterPro	Cys-rich_flank_reg_C	UniProtKB/TrEMBL
	L_dom-like	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
KEGG Report	rno:310519	UniProtKB/TrEMBL
NCBI Gene	310519	ENTREZGENE
PANTHER	PTHR45773	UniProtKB/TrEMBL
	SLIT AND NTRK-LIKE PROTEIN 3	UniProtKB/TrEMBL
Pfam	LRR_8	UniProtKB/TrEMBL
PhenoGen	Slitrk3	PhenoGen
RatGTEx	ENSRNOG00000009821	RatGTEx
SMART	LRR_TYP	UniProtKB/TrEMBL
	LRRCT	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
UniProt	A0A8I5Y6W5	ENTREZGENE, UniProtKB/TrEMBL
	A6J5P5	ENTREZGENE, UniProtKB/TrEMBL
	D4A062	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Slitrk3	SLIT and NTRK-like family, member 3	Slitrk3_predicted	SLIT and NTRK-like family, member 3 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Slitrk3_predicted	SLIT and NTRK-like family, member 3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar