SLITRK3 (SLIT and NTRK like family member 3) - Rat Genome Database

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Gene: SLITRK3 (SLIT and NTRK like family member 3) Pan paniscus
Analyze
Symbol: SLITRK3
Name: SLIT and NTRK like family member 3
RGD ID: 11856462
Description: INVOLVED IN axonogenesis (ortholog); gephyrin clustering involved in postsynaptic density assembly (ortholog); neurotransmitter-gated ion channel clustering (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN GABA-ergic synapse (ortholog); postsynaptic density membrane (ortholog); postsynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SLIT and NTRK-like protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22163,077,778 - 163,096,660 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13163,082,506 - 163,099,014 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03162,207,530 - 162,223,830 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13170,263,109 - 170,274,217 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3170,265,342 - 170,268,275 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLITRK3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22163,077,778 - 163,096,660 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13163,082,506 - 163,099,014 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03162,207,530 - 162,223,830 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13170,263,109 - 170,274,217 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3170,265,342 - 170,268,275 (-)Ensemblpanpan1.1panPan2
SLITRK3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383165,186,720 - 165,197,109 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3165,186,720 - 165,197,109 (-)EnsemblGRCh38hg38GRCh38
GRCh373164,904,508 - 164,914,897 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363166,387,202 - 166,397,163 (-)NCBINCBI36Build 36hg18NCBI36
Build 343166,387,211 - 166,397,171NCBI
Celera3163,303,200 - 163,313,157 (-)NCBICelera
Cytogenetic Map3q26.1NCBI
HuRef3162,274,102 - 162,284,057 (-)NCBIHuRef
CHM1_13164,867,392 - 164,877,350 (-)NCBICHM1_1
T2T-CHM13v2.03167,969,610 - 167,980,005 (-)NCBIT2T-CHM13v2.0
Slitrk3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39372,954,399 - 72,965,298 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl372,954,598 - 72,965,136 (-)EnsemblGRCm39 Ensembl
GRCm38373,047,066 - 73,057,953 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl373,047,265 - 73,057,803 (-)EnsemblGRCm38mm10GRCm38
MGSCv37372,852,047 - 72,860,865 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36373,134,051 - 73,142,869 (-)NCBIMGSCv36mm8
Celera373,161,163 - 73,169,943 (-)NCBICelera
Cytogenetic Map3E3NCBI
cM Map332.59NCBI
Slitrk3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82159,983,650 - 159,996,194 (-)NCBIGRCr8
mRatBN7.22157,680,067 - 157,697,404 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2157,687,535 - 157,696,709 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2164,811,274 - 164,819,329 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02162,861,763 - 162,869,820 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02157,494,537 - 157,502,594 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02170,446,582 - 170,461,513 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2170,452,702 - 170,460,754 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02189,791,839 - 189,803,411 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42163,703,843 - 163,711,895 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12163,653,847 - 163,658,733 (-)NCBI
Celera2151,947,474 - 151,955,526 (-)NCBICelera
Cytogenetic Map2q32NCBI
Slitrk3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544814,846,976 - 14,852,612 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544814,846,976 - 14,852,612 (-)NCBIChiLan1.0ChiLan1.0
SLITRK3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13430,447,606 - 30,456,444 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3430,447,659 - 30,450,598 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3439,508,350 - 39,517,571 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03430,508,728 - 30,517,972 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3430,508,739 - 30,517,944 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13430,452,470 - 30,461,687 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03430,403,986 - 30,413,213 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03430,673,215 - 30,682,473 (-)NCBIUU_Cfam_GSD_1.0
Slitrk3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560296,524,602 - 96,539,253 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367071,315,267 - 1,324,026 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367071,315,267 - 1,324,793 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLITRK3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13104,449,973 - 104,461,119 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113104,443,610 - 104,461,850 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213112,883,358 - 112,893,492 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLITRK3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11524,361,523 - 24,374,865 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1524,367,287 - 24,370,226 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606333,329,965 - 33,345,375 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slitrk3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473043,181,820 - 43,191,531 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473043,175,690 - 43,191,689 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000028312   ⟹   ENSPPAP00000006708
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3170,265,342 - 170,268,275 (-)Ensembl
RefSeq Acc Id: XM_003817699   ⟹   XP_003817747
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22163,077,778 - 163,096,660 (-)NCBI
NHGRI_mPanPan13163,082,506 - 163,099,014 (-)NCBI
Mhudiblu_PPA_v03162,207,530 - 162,223,830 (-)NCBI
PanPan1.13170,264,176 - 170,273,739 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003817700   ⟹   XP_003817748
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22163,077,778 - 163,096,660 (-)NCBI
NHGRI_mPanPan13163,082,506 - 163,099,014 (-)NCBI
Mhudiblu_PPA_v03162,207,530 - 162,223,830 (-)NCBI
PanPan1.13170,264,176 - 170,274,217 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034957688   ⟹   XP_034813579
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22163,077,778 - 163,092,460 (-)NCBI
NHGRI_mPanPan13163,082,506 - 163,097,194 (-)NCBI
Mhudiblu_PPA_v03162,207,530 - 162,219,661 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003817747 (Get FASTA)   NCBI Sequence Viewer  
  XP_003817748 (Get FASTA)   NCBI Sequence Viewer  
  XP_034813579 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000006708
  ENSPPAP00000006708.1
Reference Protein Sequences
RefSeq Acc Id: XP_003817748   ⟸   XM_003817700
- UniProtKB: A0A2R8ZS61 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003817747   ⟸   XM_003817699
- UniProtKB: A0A2R8ZS61 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034813579   ⟸   XM_034957688
- UniProtKB: A0A2R8ZS61 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000006708   ⟸   ENSPPAT00000028312
Protein Domains
LRRCT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000025563 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000028312.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  Slitrk UniProtKB/TrEMBL
KEGG Report pps:100972717 UniProtKB/TrEMBL
NCBI Gene SLITRK3 ENTREZGENE
PANTHER PTHR45773 UniProtKB/TrEMBL
  SLIT AND NTRK-LIKE PROTEIN 3 UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A2R8ZS61 ENTREZGENE, UniProtKB/TrEMBL