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Gene: Abcf3 (ATP binding cassette subfamily F member 3) Rattus norvegicus

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Symbol:

Abcf3

Name:

ATP binding cassette subfamily F member 3

RGD ID:

1310468

Description:

Predicted to enable ATP binding activity. Predicted to be involved in defense response to virus. Orthologous to human ABCF3 (ATP binding cassette subfamily F member 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ATP-binding cassette sub-family F member 3; ATP-binding cassette, sub-family F (GCN20), member 3; ATP-binding cassette, subfamily F (GCN20), member 3; LOC287982

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ABCF3 (ATP binding cassette subfamily F member 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Abcf3 (ATP-binding cassette, sub-family F member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Abcf3 (ATP binding cassette subfamily F member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ABCF3 (ATP binding cassette subfamily F member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ABCF3 (ATP binding cassette subfamily F member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Abcf3 (ATP binding cassette subfamily F member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ABCF3 (ATP binding cassette subfamily F member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ABCF3 (ATP binding cassette subfamily F member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Abcf3 (ATP binding cassette subfamily F member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Abcf3 (ATP binding cassette subfamily F member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SDK1 (sidekick cell adhesion molecule 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ABCF3 (ATP binding cassette subfamily F member 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Abcf3 (ATP-binding cassette, sub-family F member 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	abcf3 (ATP-binding cassette, sub-family F (GCN20), member 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	abcf3 (ATP-binding cassette, sub-family F (GCN20), member 3)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG9330	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	GCN20	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	abcf-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	abcf3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	abcf3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	93,844,863 - 93,856,595 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	93,844,363 - 93,856,595 (-)	Ensembl				GRCr8
mRatBN7.2	11	80,340,476 - 80,352,211 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	80,339,977 - 80,352,211 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	89,062,967 - 89,074,696 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	81,716,387 - 81,728,116 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	80,777,452 - 80,789,181 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	84,026,206 - 84,037,938 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	84,026,207 - 84,037,938 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	87,098,518 - 87,110,250 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	82,570,495 - 82,582,228 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	79,179,874 - 79,191,606 (-)	NCBI		Celera
RGSC_v3.1	11	82,628,084 - 82,639,817 (-)	NCBI
Cytogenetic Map	11	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,3',5-triiodo-L-thyronine (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

azoxystrobin (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

C60 fullerene (EXP)

copper(II) chloride (ISO)

decabromodiphenyl ether (EXP)

diazinon (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethanol (ISO)

flutamide (EXP)

gentamycin (EXP)

ivermectin (ISO)

methidathion (ISO)

N(4)-hydroxycytidine (ISO)

nefazodone (EXP)

ozone (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

resveratrol (ISO)

rotenone (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

thapsigargin (EXP)

triphenyl phosphate (ISO)

valproic acid (ISO)

zidovudine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

defense response to virus (IEA)

Molecular Function

ATP binding (IBA,IEA)

ATP hydrolysis activity (IEA)

nucleotide binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:19946888	PMID:25468996

Genomics

Comparative Map Data

Abcf3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	93,844,863 - 93,856,595 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	93,844,363 - 93,856,595 (-)	Ensembl				GRCr8
mRatBN7.2	11	80,340,476 - 80,352,211 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	80,339,977 - 80,352,211 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	89,062,967 - 89,074,696 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	81,716,387 - 81,728,116 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	80,777,452 - 80,789,181 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	84,026,206 - 84,037,938 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	84,026,207 - 84,037,938 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	87,098,518 - 87,110,250 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	82,570,495 - 82,582,228 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	79,179,874 - 79,191,606 (-)	NCBI		Celera
RGSC_v3.1	11	82,628,084 - 82,639,817 (-)	NCBI
Cytogenetic Map	11	q23	NCBI

ABCF3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	184,186,199 - 184,194,005 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	184,186,095 - 184,194,013 (+)	Ensembl			hg38	GRCh38
GRCh37	3	183,903,987 - 183,911,793 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	185,386,557 - 185,394,489 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	185,386,587 - 185,394,495	NCBI
Celera	3	182,345,574 - 182,353,503 (+)	NCBI		Celera
Cytogenetic Map	3	q27.1	NCBI
HuRef	3	181,310,757 - 181,318,688 (+)	NCBI		HuRef
CHM1_1	3	183,868,268 - 183,876,199 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	186,995,138 - 187,002,952 (+)	NCBI		T2T-CHM13v2.0

Abcf3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	20,367,309 - 20,380,357 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	20,367,327 - 20,380,129 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	20,548,556 - 20,561,603 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	20,548,577 - 20,561,379 (+)	Ensembl			mm10	GRCm38
MGSCv37	16	20,548,676 - 20,561,676 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	20,462,205 - 20,474,363 (+)	NCBI		MGSCv36	mm8
Celera	16	21,112,678 - 21,125,678 (+)	NCBI		Celera
Cytogenetic Map	16	A3	NCBI
cM Map	16	12.46	NCBI

Abcf3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	23,268,615 - 23,281,041 (-)	Ensembl
ChiLan1.0	NW_004955420	23,271,925 - 23,280,988 (-)	NCBI	ChiLan1.0	ChiLan1.0

ABCF3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	182,057,454 - 182,065,326 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	182,062,171 - 182,070,043 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	181,221,309 - 181,229,662 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	189,704,188 - 189,712,143 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	189,704,188 - 189,712,143 (+)	Ensembl			panPan2	panpan1.1

ABCF3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	17,082,911 - 17,089,942 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	17,082,987 - 17,089,911 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	21,170,094 - 21,181,250 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	16,990,979 - 17,002,135 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	16,990,997 - 17,002,133 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	17,028,322 - 17,039,479 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	17,024,247 - 17,035,405 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	17,254,475 - 17,265,633 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Abcf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	119,578,541 - 119,588,161 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936578	5,669,738 - 5,680,043 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936578	5,670,395 - 5,680,043 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ABCF3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	122,105,344 - 122,113,559 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	122,102,939 - 122,112,896 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	131,545,271 - 131,552,818 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ABCF3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	5,232,161 - 5,240,012 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	5,227,836 - 5,239,958 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666063	14,011,181 - 14,019,084 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Abcf3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	72,376,045 - 72,384,077 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	72,372,773 - 72,384,077 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Abcf3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	5,386,060 - 5,397,783 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	190
Count of miRNA genes:	144
Interacting mature miRNAs:	153
Transcripts:	ENSRNOT00000002327
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70208	Niddm22	Non-insulin dependent diabetes mellitus QTL 22	3.61		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	73308487	96070872	Rat
1581565	Pur10	Proteinuria QTL 10		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	58272363	96350770	Rat
4889859	Pur28	Proteinuria QTL 28	19.5	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	11	58928336	99753367	Rat
1549848	Bvd6	Brain ventricular dilatation QTL 6	3.1	0.0001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	11	79618519	99753367	Rat
10450831	Scl80	Serum cholesterol level QTL 80	4.7	0.01	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	11	90461781	96556255	Rat
10058954	Gmadr7	Adrenal mass QTL 7	2.49	0.0049	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	73850894	99753367	Rat
1300135	Rf19	Renal function QTL 19	3.38		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	11	54415391	96071021	Rat
1354656	Bvd3	Brain ventricular dilatation QTL 3	3.64	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	11	82951028	96351019	Rat
2312566	Glom20	Glomerulus QTL 20	3.6	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	57754837	96071021	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	20193549	96351019	Rat
724561	Plsm4	Polydactyly-luxate syndrome (PLS) morphotypes QTL 4		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	11	67962184	99753367	Rat
631506	Bp104	Blood pressure QTL 104	2.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	73308315	99753367	Rat
4889521	Gluco62	Glucose level QTL 62	2.82	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	68599321	96497754	Rat
7411658	Foco27	Food consumption QTL 27	16.2	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	11	69855943	99753367	Rat
1581572	Uae35	Urinary albumin excretion QTL 35		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	58272363	96350770	Rat
1300110	Stl7	Serum triglyceride level QTL 7	4.64		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	11	51071021	96071021	Rat

Markers in Region

RH137176

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	80,340,576 - 80,340,780 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	84,026,307 - 84,026,510	NCBI	Rnor6.0
Rnor_5.0	11	87,098,619 - 87,098,822	UniSTS	Rnor5.0
RGSC_v3.4	11	82,570,596 - 82,570,799	UniSTS	RGSC3.4
Celera	11	79,179,975 - 79,180,178	UniSTS
RH 3.4 Map	11	657.3	UniSTS
Cytogenetic Map	11	q23	UniSTS

BF390931

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	80,340,097 - 80,340,295 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	84,025,828 - 84,026,025	NCBI	Rnor6.0
Rnor_5.0	11	87,098,140 - 87,098,337	UniSTS	Rnor5.0
RGSC_v3.4	11	82,570,117 - 82,570,314	UniSTS	RGSC3.4
Celera	11	79,179,496 - 79,179,693	UniSTS
RH 3.4 Map	11	655.7	UniSTS
Cytogenetic Map	11	q23	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001011896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC110855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC082042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000002327 ⟹ ENSRNOP00000002327

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	93,844,864 - 93,856,595 (-)	Ensembl
mRatBN7.2 Ensembl	11	80,340,477 - 80,352,211 (-)	Ensembl
Rnor_6.0 Ensembl	11	84,026,207 - 84,037,938 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103652 ⟹ ENSRNOP00000076934

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	93,844,363 - 93,856,595 (-)	Ensembl
mRatBN7.2 Ensembl	11	80,339,977 - 80,352,152 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000133139 ⟹ ENSRNOP00000109432

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	93,844,864 - 93,856,595 (-)	Ensembl

RefSeq Acc Id:

NM_001011896 ⟹ NP_001011896

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	93,844,863 - 93,856,595 (-)	NCBI
mRatBN7.2	11	80,340,476 - 80,352,211 (-)	NCBI
Rnor_6.0	11	84,026,206 - 84,037,938 (-)	NCBI
Rnor_5.0	11	87,098,518 - 87,110,250 (-)	NCBI
RGSC_v3.4	11	82,570,495 - 82,582,228 (-)	RGD
Celera	11	79,179,874 - 79,191,606 (-)	RGD

Sequence:

show sequence

TGCGATTTCGGGGTAGGGAGGAAGGGCAAGGAGGCGGTCCTAGGCCTACGTCTCACCACGACTG
CGCAGGCTGGATCCCGAGTGAACATGGCGACTTGCGCCGATATCCTGCGGAGCGAGTTCCCAGA
AATTGACGGGCAGGTCTTCGACTACGTGACTGGTGTTTTGCACAGTGGCAGCGCGGATTTCGAG
TCTGTGGATGACCTGGTGGAAGCTGTCGGAGAACTCTTGCAAGAAGTGTCGGGGGACAGCAAGG
ATGACGCGGGCATTAGGGCAGTCTGTCAGCGCATGTACAACACTCTACGCCTGGCTGAACCGCA
GAACCAGGGAAACAACCAGGTGCTACTGGACGCCCCCATCCAGTTGTCGAAGATAATGGAAAAC
TATGACTGTGACACCAAGCTTCCAGGACTGCTAAAGAGGGAACAGTCCTCGACAGTAAATGCAA
AGAAACTAGAGAAGGCCGAAGCTCGACTGAAGGCAAAGCAGGAGAAGCGTTCAGAGAAGGAAAC
GCTGAAGACCAGCAGCCCCCTAGTCTTGGAGGAGGCATCAGCTAGCCAGGCAGGCAGCCGAAAA
GAGAGTCGGTTGGAATCATCTGGCAAGAACAAGTCCTATGATGTGCGAATTGAGAACTTCGATG
TCTCTTTTGGTGACAGGGTCCTGCTGGCCGGAGCAGACGTGAACTTGGCATGGGGCCGACGCTA
CGGGCTAGTGGGACGCAATGGTCTGGGGAAGACGACATTGCTAAAGATGCTGGCCACCCGGAGC
TTGCGTGTGCCAGCCCATATTTCCCTACTGCATGTAGAGCAGGAAGTTGCTGGAGATGACACCC
CTGCCCTGCAGAGTGTGCTGGAAAGTGATACCATACGAGAGGACCTGCTACGGCAGGAACGGGG
ACTCAGCCTCAAGATTGCTGCTGGCAGGGCAGAGGGTTCAGAGGCCGCACTGCTGGCAGAAGTC
TACACGAAGCTGGAGGAGATTGAGGCAGACAAGGCTCCTGCCAGAGCATCAGTCATTCTCGCGG
GCCTTGGCTTCACCCCTAAAATGCAGCAGCAGCCTACCAGGGAGTTCTCTGGCGGCTGGAGGAT
GAGATTGGCCTTGGCCCGGGCTCTCTTTGCCAGGCCAGACCTTCTGCTGTTAGACGAACCCACC
AACATGCTGGATGTCAGGGCCATCCTGTGGCTGGAGAATTACCTGCAGACGTGGCCCTCCACTA
TCCTAGTTGTCTCTCATGACCGCAACTTCCTGAATGCCATTGCCACAGACATCATCCACTTGCA
TAGCCAACGGCTAGATGGTTACCGAGGAGACTTTGAGACCTTCATCAAGAGCAAGCAGGAGCGG
CTACTCAACCAGCAGCGCGAGTATGAGGCACAGCAGCAGTATCGACAGCACATCCAGGTTTTCA
TTGACCGCTTCCGGTACAATGCAAACAGAGCCTCTCAAGTGCAGAGTAAACTGAAGATGCTGGA
GAAGCTACCTGAACTAAAGCCGGTGGACAAGGAGTCGGAGGTGGTGTTGAAGTTCCCTGATGGC
TTTGAGAAGTTCTCACCGCCAATCCTGCAGCTGGATGAGGTGGATTTCTACTACGACCCTAAGC
ACATCATCTTCAGCCGCCTGTCTGTCTCTGCCGATCTCGAGTCCCGCATCTGCGTGGTCGGGGA
GAATGGGGCTGGGAAATCCACTATGCTGAAGCTGCTCATGGGGGACCTGGCTCCTGTTCGGGGT
ATTAGGCATGCCCACAGGAATCTGAAGATAGGCTATTTCAGCCAGCACCATGTGGAGCAGCTAG
ACTTGAATGTCAGTGCTGTGGAACTCCTGGCTCGAAAATTTCCTGGGCGACCTGAAGAGGAATA
TCGTCACCAGTTGGGCCGCTATGGTATCTCCGGGGAGCTGGCCATGCGCCCTGTTGCGAGCCTG
TCTGGGGGCCAGAAGAGCCGGGTGGCCTTTGCTCAGATGACCATGCCTTGCCCCAACTTCTATA
TTCTGGATGAACCCACAAACCACCTGGACATGGAGACAATTGAAGCTCTGGGCCATGCTCTCAA
CAACTTCAGGGGTGGTGTGGTTCTGGTATCTCATGACGAGCGCTTCATCCGACTGGTGTGCAAG
GAGCTGTGGGTGTGCGAGAAAGGCAGTGTCACTCGGGTCGAGGGAGGATTTGACCAGTACCGAG
CCCTCCTCCAAGAACAGTTCCGCCGGGAGGGCTTCCTCTGAAGGCCCAGCTGAGTAAGAACTGT
GCCTAGGACGTGGACTGGTTTTTGCAAGACCCCTGAGCTACCATGTAGGCAACCAACTCCAGGT
TTAGGACTTTCCCCGCTTGGGGACAGCCTTATTTCCCAGATTTCTCTCTTCCTTTCAACTGGAG
CATCCTCTGCACAATGTGGGGCGACCTATCCAAGGGCCTGTGAAGACAGTCCTGAAGGAAAAGG
ATAGGGGATGCCATCTGGGGTTAGAAGTACCCCACTGCCCAGCTTGACAGGCCCCACGTGGCTG
CTATGTAAATTAAATACCCTCCTGGAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_063270329 ⟹ XP_063126399

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	93,844,863 - 93,854,552 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001011896	(Get FASTA)	NCBI Sequence Viewer
	XP_063126399	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH82042	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000109432
GenBank Protein	Q66H39	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001011896 ⟸ NM_001011896

- UniProtKB:

Q66H39 (UniProtKB/Swiss-Prot), A6JSA8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATCADILRSEFPEIDGQVFDYVTGVLHSGSADFESVDDLVEAVGELLQEVSGDSKDDAGIRAV
CQRMYNTLRLAEPQNQGNNQVLLDAPIQLSKIMENYDCDTKLPGLLKREQSSTVNAKKLEKAEA
RLKAKQEKRSEKETLKTSSPLVLEEASASQAGSRKESRLESSGKNKSYDVRIENFDVSFGDRVL
LAGADVNLAWGRRYGLVGRNGLGKTTLLKMLATRSLRVPAHISLLHVEQEVAGDDTPALQSVLE
SDTIREDLLRQERGLSLKIAAGRAEGSEAALLAEVYTKLEEIEADKAPARASVILAGLGFTPKM
QQQPTREFSGGWRMRLALARALFARPDLLLLDEPTNMLDVRAILWLENYLQTWPSTILVVSHDR
NFLNAIATDIIHLHSQRLDGYRGDFETFIKSKQERLLNQQREYEAQQQYRQHIQVFIDRFRYNA
NRASQVQSKLKMLEKLPELKPVDKESEVVLKFPDGFEKFSPPILQLDEVDFYYDPKHIIFSRLS
VSADLESRICVVGENGAGKSTMLKLLMGDLAPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVE
LLARKFPGRPEEEYRHQLGRYGISGELAMRPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNH
LDMETIEALGHALNNFRGGVVLVSHDERFIRLVCKELWVCEKGSVTRVEGGFDQYRALLQEQFR
REGFL

hide sequence

Ensembl Acc Id:

ENSRNOP00000002327 ⟸ ENSRNOT00000002327

Ensembl Acc Id:

ENSRNOP00000076934 ⟸ ENSRNOT00000103652

RefSeq Acc Id:	XP_063126399 ⟸ XM_063270329
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000109432 ⟸ ENSRNOT00000133139

Protein Domains

ABC transporter

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q66H39-F1-model_v2	AlphaFold	Q66H39	1-709	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698277

Promoter ID:

EPDNEW_R8802

Type:

multiple initiation site

Name:

Abcf3_1

Description:

ATP binding cassette subfamily F member 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	84,037,859 - 84,037,919	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310468	AgrOrtholog
BioCyc Gene	G2FUF-20735	BioCyc
Ensembl Genes	ENSRNOG00000001710	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000133139	ENTREZGENE
Gene3D-CATH	3.40.50.300	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7131554	IMAGE-MGC_LOAD
InterPro	AAA+_ATPase	UniProtKB/Swiss-Prot
	ABC_tran_Xtn	UniProtKB/Swiss-Prot
	ABC_transporter-like	UniProtKB/Swiss-Prot
	ABC_transporter_CS	UniProtKB/Swiss-Prot
	ABCF_EF3_subfamily	UniProtKB/Swiss-Prot
	P-loop_NTPase	UniProtKB/Swiss-Prot
KEGG Report	rno:287982	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:95186	IMAGE-MGC_LOAD
NCBI Gene	287982	ENTREZGENE
PANTHER	ATP-BINDING CASSETTE SUB-FAMILY F MEMBER 3	UniProtKB/Swiss-Prot
	ATP-BINDING TRANSPORT PROTEIN-RELATED	UniProtKB/Swiss-Prot
Pfam	ABC_tran	UniProtKB/Swiss-Prot
	ABC_tran_Xtn	UniProtKB/Swiss-Prot
PhenoGen	Abcf3	PhenoGen
PROSITE	ABC_TRANSPORTER_1	UniProtKB/Swiss-Prot
	ABC_TRANSPORTER_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000001710	RatGTEx
SMART	AAA	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot
UniProt	A0A8I5Y0Z4_RAT	UniProtKB/TrEMBL
	A0A8L2Q0F1_RAT	UniProtKB/TrEMBL
	A0ABK0LY80_RAT	UniProtKB/TrEMBL
	A6JSA8	ENTREZGENE, UniProtKB/TrEMBL
	ABCF3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-09	Abcf3	ATP binding cassette subfamily F member 3	Abcf3	ATP-binding cassette, subfamily F (GCN20), member 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-11-16	Abcf3	ATP-binding cassette, subfamily F (GCN20), member 3	Abcf3	ATP-binding cassette, sub-family F (GCN20), member 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Abcf3	ATP-binding cassette, sub-family F (GCN20), member 3	Abcf3_predicted	ATP-binding cassette, sub-family F (GCN20), member 3 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Abcf3_predicted	ATP-binding cassette, sub-family F (GCN20), member 3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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