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Gene: Zfp68 (zinc finger protein 68) Rattus norvegicus

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Symbol:

Zfp68

Name:

zinc finger protein 68

RGD ID:

1310463

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF84 (zinc finger protein 84); INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC304337

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF84 (zinc finger protein 84)	HGNC	Panther
Mus musculus (house mouse):	Zfp300 (zinc finger protein 300)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF84 (zinc finger protein 84)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC100686099 (zinc finger protein 84)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	LOC101960039 (zinc finger protein 84)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF84 (zinc finger protein 84)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF84 (zinc finger protein 84)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf84 (zinc finger protein 84)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ZNF717 (zinc finger protein 717)	HGNC	OrthoDB
Alliance orthologs ³
Mus musculus (house mouse):	Zfp68 (zinc finger protein 68)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp68 (zinc finger protein 68)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZNF84 (zinc finger protein 84)	Alliance	DIOPT (HGNC)
Drosophila melanogaster (fruit fly):	CG5245	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	ZAP1	Alliance	DIOPT (Hieranoid\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	21,139,838 - 21,154,775 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	21,139,868 - 21,154,769 (+)	Ensembl				GRCr8
mRatBN7.2	12	16,026,058 - 16,040,995 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	16,026,079 - 16,040,995 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	16,836,615 - 16,851,489 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	17,460,342 - 17,475,216 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	16,483,053 - 16,497,961 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	18,152,596 - 18,167,523 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	18,152,659 - 18,167,517 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	20,141,441 - 20,156,305 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	16,534,544 - 16,549,408 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	17,777,113 - 17,791,978 (+)	NCBI		Celera
RGSC_v3.1	12	16,564,471 - 16,578,254 (+)	NCBI
Cytogenetic Map	12	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,3-dinitrobenzene (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dinitrotoluene (EXP)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

Butylbenzyl phthalate (ISO)

CGP 52608 (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

cypermethrin (ISO)

D-glucose (ISO)

Dibutyl phosphate (ISO)

disodium selenite (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

ethyl methanesulfonate (ISO)

fenvalerate (EXP)

flutamide (EXP)

formaldehyde (ISO)

fructose (ISO)

gallic acid (ISO)

genistein (ISO)

gentamycin (EXP)

geraniol (ISO)

glucose (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

N-nitrosodiethylamine (ISO)

nickel atom (ISO)

ozone (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

quercetin (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

testosterone (ISO)

thiram (ISO)

tributylstannane (EXP)

trichloroethene (EXP)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

regulation of DNA-templated transcription (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

DNA binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Zfp68
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	21,139,838 - 21,154,775 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	21,139,868 - 21,154,769 (+)	Ensembl				GRCr8
mRatBN7.2	12	16,026,058 - 16,040,995 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	16,026,079 - 16,040,995 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	16,836,615 - 16,851,489 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	17,460,342 - 17,475,216 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	16,483,053 - 16,497,961 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	18,152,596 - 18,167,523 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	18,152,659 - 18,167,517 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	20,141,441 - 20,156,305 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	16,534,544 - 16,549,408 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	17,777,113 - 17,791,978 (+)	NCBI		Celera
RGSC_v3.1	12	16,564,471 - 16,578,254 (+)	NCBI
Cytogenetic Map	12	q11	NCBI

ZNF84
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	133,037,509 - 133,063,299 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	133,037,262 - 133,063,304 (+)	Ensembl			hg38	GRCh38
GRCh37	12	133,614,095 - 133,639,885 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	132,124,239 - 132,146,261 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	132,224,327 - 132,246,538	NCBI
Celera	12	133,314,170 - 133,340,176 (+)	NCBI		Celera
Cytogenetic Map	12	q24.33	NCBI
HuRef	12	130,393,348 - 130,419,164 (+)	NCBI		HuRef
CHM1_1	12	133,433,836 - 133,459,811 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	133,094,846 - 133,120,602 (+)	NCBI		T2T-CHM13v2.0

Zfp300
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	20,944,447 - 20,955,934 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	20,945,413 - 20,955,766 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	21,078,208 - 21,089,698 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	21,079,174 - 21,089,527 (-)	Ensembl			mm10	GRCm38
MGSCv37	X	20,656,276 - 20,666,355 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	20,236,109 - 20,246,188 (-)	NCBI		MGSCv36	mm8
Celera	X	19,213,073 - 19,223,167 (-)	NCBI		Celera
Cytogenetic Map	X	A1.3	NCBI
cM Map	X	16.59	NCBI

ZNF84
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	141,149,066 - 141,175,275 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	141,145,583 - 141,171,792 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	130,516,922 - 130,542,945 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	135,117,957 - 135,145,802 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	135,117,972 - 135,145,802 (+)	Ensembl			panPan2	panpan1.1

LOC100686099
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	171,044 - 236,117 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	175,107 - 227,778 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	214,469 - 279,313 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	229,181 - 294,088 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	203,172 - 254,544 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	171,129 - 235,976 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	257,127 - 322,495 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	189,234 - 254,343 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

LOC101960039
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	121,849,386 - 121,886,204 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936660	2,834,861 - 2,849,812 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936660	2,835,094 - 2,846,578 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF84
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	22,555,334 - 22,579,549 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1 Ensembl	14	22,593,642 - 22,608,916 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	22,555,332 - 22,608,944 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	23,956,744 - 24,008,501 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF84
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	128,341,955 - 128,362,600 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	128,352,710 - 128,364,802 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	116,429,449 - 116,452,037 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf84
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	28,269,124 - 28,290,032 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	28,295,009 - 28,317,967 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624747	28,268,867 - 28,317,387 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Zfp68
184 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	316
Count of miRNA genes:	191
Interacting mature miRNAs:	221
Transcripts:	ENSRNOT00000001784
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	5921918	25247790	Rat
61443	Btemp2	Thermal response to stress QTL 2	3.3	0.000094	body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	12	20139028	26430640	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
2306789	Ean6	Experimental allergic neuritis QTL 6	4.9		nervous system integrity trait (VT:0010566)	experimental autoimmune neuritis severity score (CMO:0001528)	12	1	29775522	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	1	38687564	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18473041	52308831	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	1	33700600	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	1	38635130	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	28133365	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	12233000	30490641	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	17464979	46784661	Rat
1300174	Bw15	Body weight QTL 15	2.93		body mass (VT:0001259)	body weight loss (CMO:0001399)	12	1	28606299	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	16187438	52308831	Rat
1331787	Rf41	Renal function QTL 41	2.998		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	12	1	33700556	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	16135029	52308831	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	51213550	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
61416	Pia4	Pristane induced arthritis QTL 4	8.4		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	12	18749469	36488809	Rat
7204484	Bp358	Blood pressure QTL 358		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	1	24849755	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	41361854	Rat
61421	Cia12	Collagen induced arthritis QTL 12	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	18749469	34312613	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18473041	52308831	Rat
2303568	Bw88	Body weight QTL 88	3		body mass (VT:0001259)	body weight (CMO:0000012)	12	1	28606299	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	16135029	52308831	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	7901625	33938215	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
1331755	Bp219	Blood pressure QTL 219	3.041		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	33700556	Rat

Markers in Region

RH134045

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	16,039,694 - 16,039,895 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	18,166,223 - 18,166,423	NCBI	Rnor6.0
Rnor_5.0	12	20,155,005 - 20,155,205	UniSTS	Rnor5.0
RGSC_v3.4	12	16,548,108 - 16,548,308	UniSTS	RGSC3.4
Celera	12	17,790,678 - 17,790,878	UniSTS
RH 3.4 Map	12	256.3	UniSTS
Cytogenetic Map	12	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

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alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001142945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001784 ⟹ ENSRNOP00000001784

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	21,139,868 - 21,154,769 (+)	Ensembl
mRatBN7.2 Ensembl	12	16,026,131 - 16,040,995 (+)	Ensembl
Rnor_6.0 Ensembl	12	18,152,659 - 18,167,517 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000079221 ⟹ ENSRNOP00000072952

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	16,026,079 - 16,040,995 (+)	Ensembl
Rnor_6.0 Ensembl	12	18,152,659 - 18,167,517 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097091 ⟹ ENSRNOP00000084337

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	16,026,100 - 16,040,995 (+)	Ensembl

RefSeq Acc Id:

NM_001107128 ⟹ NP_001100598

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	21,139,911 - 21,154,775 (+)	NCBI
mRatBN7.2	12	16,026,131 - 16,040,995 (+)	NCBI
Rnor_6.0	12	18,152,659 - 18,167,523 (+)	NCBI
Rnor_5.0	12	20,141,441 - 20,156,305 (+)	NCBI
RGSC_v3.4	12	16,534,544 - 16,549,408 (+)	RGD
Celera	12	17,777,113 - 17,791,978 (+)	RGD

Sequence:

show sequence

GCTCCGCGCAGCTCTGGTGGCGTGGTGACGCTGTGGGTGCTGAACGATGGTGGGAGGACACCAG
CGTCCCCCAGCAGTGGACTTGATCCCTGCTATCTGAGTGGAGGACCACAGTAGGCCACTAGAGG
AGGAGAATCAAGATGCCCCAGTTGACAGTTAGGTGACGCTCTGAAGCTCATCTGCCTCTTAAAC
CATCAGGTCTAGGTGGCTGTGCTGTAGACTCTGTTGCCCTGTGACGTGCTGGTGCGGGGAGTTC
CATAGGGAGGACGCTCGATGTCCTGGAAGCCAGAAATGGGGTTGGTGTCATTTGAGGATATAGC
TGTGGAATTCACCTGGCAGGAATGGCAGGACCTGAATGAAGGTCAGAGAACTCTCTACAGGGAT
GTGATGCTGGAGAACTATAGCAACTTGCTGTTCTTGGGGCACTGTAAGACCAAACCTGAGCTGA
TCTTCAATTTGGAGCAAAGACTTGGGTCATGGATTGTAGAAGCCTCACACCAGAGCATCCCAGA
TTTCCAAAAAGTGAATACCCTAAACGAGACCAGTCCAGAAACCAAAGCGCGACATGTGTGTCAA
GTTCCTCTCAACAGTGATACGTCAGAGGAGTTGGCTGGAATAGGGAATACTTGCACTGTGAGCA
CAAACTGCTTTTCAAATCAGACTGTAAAGAGTGAGGACTCACTAGGAATGAGTCCTAGAAAGTT
TACTCTGTGGAAGGATGTGTATCTTCATAACGATGTTGATGAGGTAGAAGTTGGAGAAGAACCC
GATGATCTTAATGGAACTGTAAAATCTGTCAGACATCCAGAGCGTGTTAGTCTATACAGGTTTC
AAAGTTCACAAGGTTACTTTCAGAGTCTTATACCAGGGAAATCCTTCAACACAAAAGCAGTATT
ACTTACCCATAAGTTCAATGAATATGCAAAATCCTTAGTTGACACAGCATTTATTGGCAAAGAG
ATGGCTCAGATAAGGGTGAAATCATTTGAATGTAATGTATCCGAGATAAAGTGTAACAAGTCTG
ACCTTAATGAAAATGACCCAGTGCACGAGGGAGAGAAACATTACAAATGTAGTGACTTTGAGAA
TCCTTTTATTATTGAATCATACCTCCCAAAACATAAGGGACAGCATGAAAAGCTCTTTGTCCAG
AAGGGATATGAGTTTTCTCAGCAGTCAGAAGTGAGTCTTCATCAGAAAATCCGCAGAGGGAAAA
AGACCTATGAATGTAAAATATGTGGCAAGTGCTTTTATTGGAAAACGAGCTTCAATAGACATCA
GAGCACTCACACTGGTGAGAAGCCCTATGAATGTACAGAATGCAGTAAAGCTTTCTGCCAAAAG
TCACATCTCACTCAGCATCAGAGAGTGCATACAGGTGAGAGACCATATATATGTTTTGAATGCA
GGAAAGCTTTCTATCGTAAATCAGAGCTTACTGACCATCAGAGAATTCATACAGGTGAGAAGCC
ATATGAATGTAAGGAATGTGGGAAAGCTTTTTGCCAAAAGCCCCAACTTACTCTACATCAGAGA
ATTCATACAGGTGAGAAGCCCTATGAGTGTGCAGAATGTGGGAAAGCCTTCTCCACCAAGTCCT
ACTTAACTGTACATCAGAGAACTCACACAGGTGAGAAACCTTACGAATGTACAGTATGTAGGAA
GTCATTTATCTGTAAGTCAAGTTTCAGCCATCATTGGAGAACTCATACAGGTGAAAAACCTTAT
GAATGTAAGCAGTGTATGAAGACCTTCTACCGTAAGTCAGGCCTGACTCGACACCAGAGAACTC
ACACAGGTGACAAACGCTATGAATGTCAATTATGTCAGAAAGCTTTTTACTGCACTTCACACCT
CATTGTACATCAGCGAACTCATACAGGTGAGAAACCTTATGAATGTAAGGAGTGTAGGAAAGCT
TTCTACGATAAGTCAAATCTTAAACGGCATCAGAAGATTCATACTGCGAAGAAGGCCTCTGAAT
GCAAACAATCTAACAAATTTTTTCTGAGTAATACTTCTCAACATCAGACAATGTATTATGAATA
TTGAGAAGGCAAGAAAGCTTTTCACCAAAAACCAAACTTTATTTAAACATTCAACACTCTTCTT
ACAGGTAAGGAAACCCTGTGATTGGAAAGTACTTATCCAAAAGTCAGCTCTTACTGTACATTGG
ACCACTTATACAAGGGATTAAATCAAATGAATAAACAGTGAAGGAAACCTTTGACTCTTGTTTA
TTAAAGAACTTTGACTGTGGCAAATAATTTAGCCAGTACATTAACCCAACATAAGACAGATATT
TATGGTGGAGGATCACTTGCACTCAGGCAATAGAGGAAGACACCATGACTTAAAAGAAAATAGG
GCAAAGTTTTCCACTTGACATTCTGACATACTACCACACCCCAGTGGTGTGAAAATGAAAGGGA
GGAATGCCCCAAACTCTGAATAGAATTTGGAACTCATTGCTGGGTGTTTTGAGACGTTCCTGTA
ATCTCAATATTTGGCAGGTTGAAGAAAGGAGTTTAGGAATTGTAGTCTAACCTTTGCTACAAAG
CAGTTTCAAATCCAGCCTGGGTTACATGAGAACTTTAAAAAAAAATGACAATTACAATACAAGA
ATGAGCCTCTAAACTTCGCAAACCATATAAAGGGGATAAAGGACAATACAGCTCGGGGTAATTG
TTGCTATACCATACTTCCATTTGAACCAGAGATGCTATAGGAGTCCTGTCTGCGTTAGTTCTGT
AGAAACTTGTGGAACTTTGTGGAAATTACATGACACTGAGCATCACTTATAAAAGCGAGCGCAC
TTGAATTTCGGCACTTAGGGCAGTGACAGTGTTTGGCTGCTATTGGTGTAATCTGTCTTTAAAT
TACATCTGTTATCACCTTACAGGCTTTATTATATTTATTTATCTGGGCATGCACTCCATAGCAT
ATCAAAGTCGGGACAAACCCCAAAGTCATTTCCCTTCTACCTGGTGGATTCTTAGTATCAAACT
CAGGTTATCAGGCTTTGTAGAAAACATCTTTACTCTTTGAGCCATGTCTCCTGCTCCTGTATTT
ATACTCAACTATAGTATGAATTAAAAGCAATTCTGGAGTTAACTTCAGCTAGTCCAGAATGCTT
TACTGGGAAGGACATTTTTTAAAATCACTTTTAGTATAGTCTCCCTAACTTCAGTTTGGAGATA
AGGTCTTGGTACAAATACCCTGACTGATAGCAAAGTCCTGCTTATCTTGCCTTAGTCTTGTGAG
TGCTTAGATTAAATGTTATGTGCCACTGTGCCCAGCCATAAAATTTTGAGGCATAAAAAAATTA
ATGAAAATTTCTTGAGTTATTAGGTGCTGTGTTCATGTTCTAAATACCCATCACTGTGTTTAAA
AAATCAAGCGAATGAAAGATTTGACTTGACAGCACAGTGAAAGGATGGCAGATCTGTCGACATC
AAGAGAAATGATTGTAATGTGGAATTCAGTTTGCCATATCAGATACCCACATCTTGGTCATCAC
AGACAAGCAGAAGGCAGGGAAGCTGAAGAAGATAATGGAAGAGGTGAAATAAAACATACTCTCA
TTTGGGTTGTATTAAAATCCTAAAATGTAAAGACATTCTGATCATGTTATTTGGGTGTTAATTG
GAAATAATAAATGATTTAAAAATACTATTTCAGGTTGTATTCAGTTGTGTACAAACAAGCAGGA
TGGTCATTCCCAGTCAGCATAAATTGACCTCCAATCTGGGGCATTTGTGGTTGACGTGAATGAA
AGTTGGTAGTTATACTGAAATCTAGTGGACAAGGTTGAACCGATTTCATAATATAAGTACATTC
TGTATTATATAGTTTTAGAAATCTGAATGAAGGCACTCAGCTTAAGTACAGAAAATTTGTTAAA
TATGTAATGTAACAAATACATTGAGAGACTCGAGGTAGGGTACATGGCCTTTTATGTATGTAGT
TCTCACTGCAATTTCAGATTTACTAAATTACTGTGGTTATATTATTTAACTTGGTATTGCTGTG
GCCAACTATCTGACAGATCCAATTTAAGGGTGTAAATATTTATTTTAGGCCATAATTTCAAATA
GTAGTTACTTGACCCCCTTACCATGGGTAGTTCATGGTTTGCAAAAGGGTTAGCAAGCACTTTT
TAACATTAAAACAAATAGGAAACAGCAAAGGAGTGGGTGAATACTAGGTTTACTCTGTAATGAT
ATACAACAGCAATGTATATTAAAAACAAATATATACCCCTTCCTCCCAAAAAACAGACAAAAGG
TCTTCCTGAATTTTATTTCACCTCCTAAAGTATTGCCACTATCCAAGAATCAAGCATCCAATAC
ACAAGCCTTTGGGAACATTTCAGATTCAAATCAATATATACAGTTTCACATGAAACAACTAACC
TTTTAATATTCTGTTAAATATATCATGTTCATATAGAGTTGTATGGGTATTTTTATAAAACTAT
TCAGACTAAAACTGACAAGCTATCCCCTGCCCCAAAGTGGGTGATTGATAATGTATTTTCAAAG
TTTAATCAACATAGAACTTGTAATTCTAATATAAATTCATGTTGAAATGCAGATCCTGGTATAC
AGTTATTCATAGTTGACATCTGAATTAAAGCATTTTTGGTAAACAA

hide sequence

RefSeq Acc Id:

NM_001142945 ⟹ NP_001136417

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	21,139,911 - 21,154,775 (+)	NCBI
mRatBN7.2	12	16,026,131 - 16,040,995 (+)	NCBI
Rnor_6.0	12	18,152,659 - 18,167,523 (+)	NCBI
Rnor_5.0	12	20,141,441 - 20,156,305 (+)	NCBI
RGSC_v3.4	12	16,534,544 - 16,549,408 (+)	RGD
Celera	12	17,777,113 - 17,791,978 (+)	RGD

Sequence:

show sequence

GCTCCGCGCAGCTCTGGTGGCGTGGTGACGCTGTGGGTGCTGAACGATGGTGGGAGGACACCAG
CGTCCCCCAGCAGTGGACTTGATCCCTGCTATCTGAGTGGAGGACCACAGTAGGCCACTAGAGG
AGGAGAATCAAGATGCCCCAGTTGACAGTTAGGTGACGCTCTGAAGCTCATCTGCCTCTTAAAC
CATCAGGGGTTGGTGTCATTTGAGGATATAGCTGTGGAATTCACCTGGCAGGAATGGCAGGACC
TGAATGAAGGTCAGAGAACTCTCTACAGGGATGTGATGCTGGAGAACTATAGCAACTTGCTGTT
CTTGGGGCACTGTAAGACCAAACCTGAGCTGATCTTCAATTTGGAGCAAAGACTTGGGTCATGG
ATTGTAGAAGCCTCACACCAGAGCATCCCAGATTTCCAAAAAGTGAATACCCTAAACGAGACCA
GTCCAGAAACCAAAGCGCGACATGTGTGTCAAGTTCCTCTCAACAGTGATACGTCAGAGGAGTT
GGCTGGAATAGGGAATACTTGCACTGTGAGCACAAACTGCTTTTCAAATCAGACTGTAAAGAGT
GAGGACTCACTAGGAATGAGTCCTAGAAAGTTTACTCTGTGGAAGGATGTGTATCTTCATAACG
ATGTTGATGAGGTAGAAGTTGGAGAAGAACCCGATGATCTTAATGGAACTGTAAAATCTGTCAG
ACATCCAGAGCGTGTTAGTCTATACAGGTTTCAAAGTTCACAAGGTTACTTTCAGAGTCTTATA
CCAGGGAAATCCTTCAACACAAAAGCAGTATTACTTACCCATAAGTTCAATGAATATGCAAAAT
CCTTAGTTGACACAGCATTTATTGGCAAAGAGATGGCTCAGATAAGGGTGAAATCATTTGAATG
TAATGTATCCGAGATAAAGTGTAACAAGTCTGACCTTAATGAAAATGACCCAGTGCACGAGGGA
GAGAAACATTACAAATGTAGTGACTTTGAGAATCCTTTTATTATTGAATCATACCTCCCAAAAC
ATAAGGGACAGCATGAAAAGCTCTTTGTCCAGAAGGGATATGAGTTTTCTCAGCAGTCAGAAGT
GAGTCTTCATCAGAAAATCCGCAGAGGGAAAAAGACCTATGAATGTAAAATATGTGGCAAGTGC
TTTTATTGGAAAACGAGCTTCAATAGACATCAGAGCACTCACACTGGTGAGAAGCCCTATGAAT
GTACAGAATGCAGTAAAGCTTTCTGCCAAAAGTCACATCTCACTCAGCATCAGAGAGTGCATAC
AGGTGAGAGACCATATATATGTTTTGAATGCAGGAAAGCTTTCTATCGTAAATCAGAGCTTACT
GACCATCAGAGAATTCATACAGGTGAGAAGCCATATGAATGTAAGGAATGTGGGAAAGCTTTTT
GCCAAAAGCCCCAACTTACTCTACATCAGAGAATTCATACAGGTGAGAAGCCCTATGAGTGTGC
AGAATGTGGGAAAGCCTTCTCCACCAAGTCCTACTTAACTGTACATCAGAGAACTCACACAGGT
GAGAAACCTTACGAATGTACAGTATGTAGGAAGTCATTTATCTGTAAGTCAAGTTTCAGCCATC
ATTGGAGAACTCATACAGGTGAAAAACCTTATGAATGTAAGCAGTGTATGAAGACCTTCTACCG
TAAGTCAGGCCTGACTCGACACCAGAGAACTCACACAGGTGACAAACGCTATGAATGTCAATTA
TGTCAGAAAGCTTTTTACTGCACTTCACACCTCATTGTACATCAGCGAACTCATACAGGTGAGA
AACCTTATGAATGTAAGGAGTGTAGGAAAGCTTTCTACGATAAGTCAAATCTTAAACGGCATCA
GAAGATTCATACTGCGAAGAAGGCCTCTGAATGCAAACAATCTAACAAATTTTTTCTGAGTAAT
ACTTCTCAACATCAGACAATGTATTATGAATATTGAGAAGGCAAGAAAGCTTTTCACCAAAAAC
CAAACTTTATTTAAACATTCAACACTCTTCTTACAGGTAAGGAAACCCTGTGATTGGAAAGTAC
TTATCCAAAAGTCAGCTCTTACTGTACATTGGACCACTTATACAAGGGATTAAATCAAATGAAT
AAACAGTGAAGGAAACCTTTGACTCTTGTTTATTAAAGAACTTTGACTGTGGCAAATAATTTAG
CCAGTACATTAACCCAACATAAGACAGATATTTATGGTGGAGGATCACTTGCACTCAGGCAATA
GAGGAAGACACCATGACTTAAAAGAAAATAGGGCAAAGTTTTCCACTTGACATTCTGACATACT
ACCACACCCCAGTGGTGTGAAAATGAAAGGGAGGAATGCCCCAAACTCTGAATAGAATTTGGAA
CTCATTGCTGGGTGTTTTGAGACGTTCCTGTAATCTCAATATTTGGCAGGTTGAAGAAAGGAGT
TTAGGAATTGTAGTCTAACCTTTGCTACAAAGCAGTTTCAAATCCAGCCTGGGTTACATGAGAA
CTTTAAAAAAAAATGACAATTACAATACAAGAATGAGCCTCTAAACTTCGCAAACCATATAAAG
GGGATAAAGGACAATACAGCTCGGGGTAATTGTTGCTATACCATACTTCCATTTGAACCAGAGA
TGCTATAGGAGTCCTGTCTGCGTTAGTTCTGTAGAAACTTGTGGAACTTTGTGGAAATTACATG
ACACTGAGCATCACTTATAAAAGCGAGCGCACTTGAATTTCGGCACTTAGGGCAGTGACAGTGT
TTGGCTGCTATTGGTGTAATCTGTCTTTAAATTACATCTGTTATCACCTTACAGGCTTTATTAT
ATTTATTTATCTGGGCATGCACTCCATAGCATATCAAAGTCGGGACAAACCCCAAAGTCATTTC
CCTTCTACCTGGTGGATTCTTAGTATCAAACTCAGGTTATCAGGCTTTGTAGAAAACATCTTTA
CTCTTTGAGCCATGTCTCCTGCTCCTGTATTTATACTCAACTATAGTATGAATTAAAAGCAATT
CTGGAGTTAACTTCAGCTAGTCCAGAATGCTTTACTGGGAAGGACATTTTTTAAAATCACTTTT
AGTATAGTCTCCCTAACTTCAGTTTGGAGATAAGGTCTTGGTACAAATACCCTGACTGATAGCA
AAGTCCTGCTTATCTTGCCTTAGTCTTGTGAGTGCTTAGATTAAATGTTATGTGCCACTGTGCC
CAGCCATAAAATTTTGAGGCATAAAAAAATTAATGAAAATTTCTTGAGTTATTAGGTGCTGTGT
TCATGTTCTAAATACCCATCACTGTGTTTAAAAAATCAAGCGAATGAAAGATTTGACTTGACAG
CACAGTGAAAGGATGGCAGATCTGTCGACATCAAGAGAAATGATTGTAATGTGGAATTCAGTTT
GCCATATCAGATACCCACATCTTGGTCATCACAGACAAGCAGAAGGCAGGGAAGCTGAAGAAGA
TAATGGAAGAGGTGAAATAAAACATACTCTCATTTGGGTTGTATTAAAATCCTAAAATGTAAAG
ACATTCTGATCATGTTATTTGGGTGTTAATTGGAAATAATAAATGATTTAAAAATACTATTTCA
GGTTGTATTCAGTTGTGTACAAACAAGCAGGATGGTCATTCCCAGTCAGCATAAATTGACCTCC
AATCTGGGGCATTTGTGGTTGACGTGAATGAAAGTTGGTAGTTATACTGAAATCTAGTGGACAA
GGTTGAACCGATTTCATAATATAAGTACATTCTGTATTATATAGTTTTAGAAATCTGAATGAAG
GCACTCAGCTTAAGTACAGAAAATTTGTTAAATATGTAATGTAACAAATACATTGAGAGACTCG
AGGTAGGGTACATGGCCTTTTATGTATGTAGTTCTCACTGCAATTTCAGATTTACTAAATTACT
GTGGTTATATTATTTAACTTGGTATTGCTGTGGCCAACTATCTGACAGATCCAATTTAAGGGTG
TAAATATTTATTTTAGGCCATAATTTCAAATAGTAGTTACTTGACCCCCTTACCATGGGTAGTT
CATGGTTTGCAAAAGGGTTAGCAAGCACTTTTTAACATTAAAACAAATAGGAAACAGCAAAGGA
GTGGGTGAATACTAGGTTTACTCTGTAATGATATACAACAGCAATGTATATTAAAAACAAATAT
ATACCCCTTCCTCCCAAAAAACAGACAAAAGGTCTTCCTGAATTTTATTTCACCTCCTAAAGTA
TTGCCACTATCCAAGAATCAAGCATCCAATACACAAGCCTTTGGGAACATTTCAGATTCAAATC
AATATATACAGTTTCACATGAAACAACTAACCTTTTAATATTCTGTTAAATATATCATGTTCAT
ATAGAGTTGTATGGGTATTTTTATAAAACTATTCAGACTAAAACTGACAAGCTATCCCCTGCCC
CAAAGTGGGTGATTGATAATGTATTTTCAAAGTTTAATCAACATAGAACTTGTAATTCTAATAT
AAATTCATGTTGAAATGCAGATCCTGGTATACAGTTATTCATAGTTGACATCTGAATTAAAGCA
TTTTTGGTAAACAA

hide sequence

RefSeq Acc Id:

XM_008768975 ⟹ XP_008767197

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	21,139,838 - 21,153,796 (+)	NCBI
mRatBN7.2	12	16,026,058 - 16,040,936 (+)	NCBI
Rnor_6.0	12	18,152,596 - 18,167,464 (+)	NCBI

Sequence:

show sequence

TTGGCTGTCACCCGTCTTTTGTCTGGGAGCCGCCATCTTGGGCTCGGTGTTCCTGCCCAGGAGG
CTCCGCGCAGCTCTGGTGGCGTGGTGACGCTGTGGGTGCTGAACGATGGTGGGAGGACACCAGC
GTCCCCCAGCAGTGGACTTGATCCCTGCTATCTGAGTGGAGGACCACAGTAGGCCACTAGAGGA
GGAGAATCAAGATGCCCCAGTTGACAGTTAGGTGACGCTCTGAAGCTCATCTGCCTCTTAAACC
ATCAGGTGGCTGTGCTGTAGACTCTGTTGCCCTGTGACGTGCTGGTGCGGGGAGTTCCATAGGG
AGGACGCTCGATGTCCTGGAAGCCAGAAATGGGGTTGGTGTCATTTGAGGATATAGCTGTGGAA
TTCACCTGGCAGGAATGGCAGGACCTGAATGAAGGTCAGAGAACTCTCTACAGGGATGTGATGC
TGGAGAACTATAGCAACTTGCTGTTCTTGGGGCACTGTAAGACCAAACCTGAGCTGATCTTCAA
TTTGGAGCAAAGACTTGGGTCATGGATTGTAGAAGCCTCACACCAGAGCATCCCAGATTTCCAA
AAAGTGAATACCCTAAACGAGACCAGTCCAGAAACCAAAGCGCGACATGTGTGTCAAGTTCCTC
TCAACAGTGATACGTCAGAGGAGTTGGCTGGAATAGGGAATACTTGCACTGTGAGCACAAACTG
CTTTTCAAATCAGACTGTAAAGAGTGAGGACTCACTAGGAATGAGTCCTAGAAAGTTTACTCTG
TGGAAGGATGTGTATCTTCATAACGATGTTGATGAGGTAGAAGTTGGAGAAGAACCCGATGATC
TTAATGGAACTGTAAAATCTGTCAGACATCCAGAGCGTGTTAGTCTATACAGGTTTCAAAGTTC
ACAAGGTTACTTTCAGAGTCTTATACCAGGGAAATCCTTCAACACAAAAGCAGTATTACTTACC
CATAAGTTCAATGAATATGCAAAATCCTTAGTTGACACAGCATTTATTGGCAAAGAGATGGCTC
AGATAAGGGTGAAATCATTTGAATGTAATGTATCCGAGATAAAGTGTAACAAGTCTGACCTTAA
TGAAAATGACCCAGTGCACGAGGGAGAGAAACATTACAAATGTAGTGACTTTGAGAATCCTTTT
ATTATTGAATCATACCTCCCAAAACATAAGGGACAGCATGAAAAGCTCTTTGTCCAGAAGGGAT
ATGAGTTTTCTCAGCAGTCAGAAGTGAGTCTTCATCAGAAAATCCGCAGAGGGAAAAAGACCTA
TGAATGTAAAATATGTGGCAAGTGCTTTTATTGGAAAACGAGCTTCAATAGACATCAGAGCACT
CACACTGGTGAGAAGCCCTATGAATGTACAGAATGCAGTAAAGCTTTCTGCCAAAAGTCACATC
TCACTCAGCATCAGAGAGTGCATACAGGTGAGAGACCATATATATGTTTTGAATGCAGGAAAGC
TTTCTATCGTAAATCAGAGCTTACTGACCATCAGAGAATTCATACAGGTGAGAAGCCATATGAA
TGTAAGGAATGTGGGAAAGCTTTTTGCCAAAAGCCCCAACTTACTCTACATCAGAGAATTCATA
CAGGTGAGAAGCCCTATGAGTGTGCAGAATGTGGGAAAGCCTTCTCCACCAAGTCCTACTTAAC
TGTACATCAGAGAACTCACACAGGTGAGAAACCTTACGAATGTACAGTATGTAGGAAGTCATTT
ATCTGTAAGTCAAGTTTCAGCCATCATTGGAGAACTCATACAGGTGAAAAACCTTATGAATGTA
AGCAGTGTATGAAGACCTTCTACCGTAAGTCAGGCCTGACTCGACACCAGAGAACTCACACAGG
TGACAAACGCTATGAATGTCAATTATGTCAGAAAGCTTTTTACTGCACTTCACACCTCATTGTA
CATCAGCGAACTCATACAGGTGAGAAACCTTATGAATGTAAGGAGTGTAGGAAAGCTTTCTACG
ATAAGTCAAATCTTAAACGGCATCAGAAGATTCATACTGCGAAGAAGGCCTCTGAATGCAAACA
ATCTAACAAATTTTTTCTGAGTAATACTTCTCAACATCAGACAATGTATTATGAATATTGAGAA
GGCAAGAAAGCTTTTCACCAAAAACCAAACTTTATTTAAACATTCAACACTCTTCTTACAGGTA
AGGAAACCCTGTGATTGGAAAGTACTTATCCAAAAGTCAGCTCTTACTGTACATTGGACCACTT
ATACAAGGGATTAAATCAAATGAATAAACAGTGAAGGAAACCTTTGACTCTTGTTTATTAAAGA
ACTTTGACTGTGGCAAATAATTTAGCCAGTACATTAACCCAACATAAGACAGATATTTATGGTG
GAGGATCACTTGCACTCAGGCAATAGAGGAAGACACCATGACTTAAAAGAAAATAGGGCAAAGT
TTTCCACTTGACATTCTGACATACTACCACACCCCAGTGGTGTGAAAATGAAAGGGAGGAATGC
CCCAAACTCTGAATAGAATTTGGAACTCATTGCTGGGTGTTTTGAGACGTTCCTGTAATCTCAA
TATTTGGCAGGTTGAAGAAAGGAGTTTAGGAATTGTAGTCTAACCTTTGCTACAAAGCAGTTTC
AAATCCAGCCTGGGTTACATGAGAACTTTAAAAAAAAATGACAATTACAATACAAGAATGAGCC
TCTAAACTTCGCAAACCATATAAAGGGGATAAAGGACAATACAGCTCGGGGTAATTGTTGCTAT
ACCATACTTCCATTTGAACCAGAGATGCTATAGGAGTCCTGTCTGCGTTAGTTCTGTAGAAACT
TGTGGAACTTTGTGGAAATTACATGACACTGAGCATCACTTATAAAAGCGAGCGCACTTGAATT
TCGGCACTTAGGGCAGTGACAGTGTTTGGCTGCTATTGGTGTAATCTGTCTTTAAATTACATCT
GTTATCACCTTACAGGCTTTATTATATTTATTTATCTGGGCATGCACTCCATAGCATATCAAAG
TCGGGACAAACCCCAAAGTCATTTCCCTTCTACCTGGTGGATTCTTAGTATCAAACTCAGGTTA
TCAGGCTTTGTAGAAAACATCTTTACTCTTTGAGCCATGTCTCCTGCTCCTGTATTTATACTCA
ACTATAGTATGAATTAAAAGCAATTCTGGAGTTAACTTCAGCTAGTCCAGAATGCTTTACTGGG
AAGGACATTTTTTAAAATCACTTTTAGTATAGTCTCCCTAACTTCAGTTTGGAGATAAGGTCTT
GGTACAAATACCCTGACTGATAGCAAAGTCCTGCTTATCTTGCCTTAGTCTTGTGAGTGCTTAG
ATTAAATGTTATGTGCCACTGTGCCCAGCCATAAAATTTTGAGGCATAAAAAAATTAATGAAAA
TTTCTTGAGTTATTAGGTGCTGTGTTCATGTTCTAAATACCCATCACTGTGTTTAAAAAATCAA
GCGAATGAAAGATTTGACTTGACAGCACAGTGAAAGGATGGCAGATCTGTCGACATCAAGAGAA
ATGATTGTAATGTGGAATTCAGTTTGCCATATCAGATACCCACATCTTGGTCATCACAGACAAG
CAGAAGGCAGGGAAGCTGAAGAAGATAATGGAAGAGGTGAAATAAAACATACTCTCATTTGGGT
TGTATTAAAATCCTAAAATGTAAAGACATTCTGATCATGTTATTTGGGTGTTAATTGGAAATAA
TAAATGATTTAAAAATACTATTTCAGGTTGTATTCAGTTGTGTACAAACAAGCAGGATGGTCAT
TCCCAGTCAGCATAAATTGACCTCCAATCTGGGGCATTTGTGGTTGACGTGAATGAAAGTTGGT
AGTTATACTGAAATCTAGTGGACAAGGTTGAACCGATTTCATAATATAAGTACATTCTGTATTA
TATAGTTTTAGAAATCTGAATGAAGGCACTCAGCTTAAGTACAGAAAATTTGTTAAATATGTAA
TGTAACAAATACATTGAGAGACTCGAGGTAGGGTACATGGCCTTTTATGTATGTAGTTCTCACT
GCAATTTCAGATTTACTAAATTACTGTGGTTATATTATTTAACTTGGTATTGCTGTGGCCAACT
ATCTGACAGATCCAATTTAAGGGTGTAAATATTTATTTTAGGCCATAATTTCAAATAGTAGTTA
CTTGACCCCCTTACCATGGGTAGTTCATGGTTTGCAAAAGGGTTAGCAAGCACTTTTTAACATT
AAAACAAATAGGAAACAGCAAAGGAGTGGGTGAATACTAGGTTTACTCTGTAATGATATACAAC
AGCAATGTATATTAAAAACAAATATATACCCCTTCCTCCCAAAAAACAGACAAAAGGTCTTCCT
GAATTTTATTTCACCTCCTAAAGTATTGCCACTATCCAAGAATCAAGCATCCAATACACAAGCC
TTTGGGAACATTTCAGATTCAAATCAATATATACAGTTTCACATGAAACAACTAACCTTTTAAT
ATTCTGTTAAATATATCATGTTCATATAGAGTTGTATGGGTATTTTTATAAAACTATTCAGACT
AAAACTGACAAGCTATCCCCTGCCCCAAAGTGGGTGATTGATAATGTATTTTCAAAGTTTAATC
AACATAGAACTTGTAATTCTAATATAAATTCATGTTGAAATGCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001100598	(Get FASTA)	NCBI Sequence Viewer
	NP_001136417	(Get FASTA)	NCBI Sequence Viewer
	XP_008767197	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL89803	(Get FASTA)	NCBI Sequence Viewer
	EDL89804	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001784
	ENSRNOP00000001784.5

RefSeq Acc Id:	NP_001100598 ⟸ NM_001107128
- Peptide Label:	isoform 1
- UniProtKB:	D3ZIP9 (UniProtKB/TrEMBL), A6K1Z5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSWKPEMGLVSFEDIAVEFTWQEWQDLNEGQRTLYRDVMLENYSNLLFLGHCKTKPELIFNLEQ RLGSWIVEASHQSIPDFQKVNTLNETSPETKARHVCQVPLNSDTSEELAGIGNTCTVSTNCFSN QTVKSEDSLGMSPRKFTLWKDVYLHNDVDEVEVGEEPDDLNGTVKSVRHPERVSLYRFQSSQGY FQSLIPGKSFNTKAVLLTHKFNEYAKSLVDTAFIGKEMAQIRVKSFECNVSEIKCNKSDLNEND PVHEGEKHYKCSDFENPFIIESYLPKHKGQHEKLFVQKGYEFSQQSEVSLHQKIRRGKKTYECK ICGKCFYWKTSFNRHQSTHTGEKPYECTECSKAFCQKSHLTQHQRVHTGERPYICFECRKAFYR KSELTDHQRIHTGEKPYECKECGKAFCQKPQLTLHQRIHTGEKPYECAECGKAFSTKSYLTVHQ RTHTGEKPYECTVCRKSFICKSSFSHHWRTHTGEKPYECKQCMKTFYRKSGLTRHQRTHTGDKR YECQLCQKAFYCTSHLIVHQRTHTGEKPYECKECRKAFYDKSNLKRHQKIHTAKKASECKQSNK FFLSNTSQHQTMYYEY hide sequence

RefSeq Acc Id:	NP_001136417 ⟸ NM_001142945
- Peptide Label:	isoform 2
- UniProtKB:	A6K1Z6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLENYSNLLFLGHCKTKPELIFNLEQRLGSWIVEASHQSIPDFQKVNTLNETSPETKARHVCQV PLNSDTSEELAGIGNTCTVSTNCFSNQTVKSEDSLGMSPRKFTLWKDVYLHNDVDEVEVGEEPD DLNGTVKSVRHPERVSLYRFQSSQGYFQSLIPGKSFNTKAVLLTHKFNEYAKSLVDTAFIGKEM AQIRVKSFECNVSEIKCNKSDLNENDPVHEGEKHYKCSDFENPFIIESYLPKHKGQHEKLFVQK GYEFSQQSEVSLHQKIRRGKKTYECKICGKCFYWKTSFNRHQSTHTGEKPYECTECSKAFCQKS HLTQHQRVHTGERPYICFECRKAFYRKSELTDHQRIHTGEKPYECKECGKAFCQKPQLTLHQRI HTGEKPYECAECGKAFSTKSYLTVHQRTHTGEKPYECTVCRKSFICKSSFSHHWRTHTGEKPYE CKQCMKTFYRKSGLTRHQRTHTGDKRYECQLCQKAFYCTSHLIVHQRTHTGEKPYECKECRKAF YDKSNLKRHQKIHTAKKASECKQSNKFFLSNTSQHQTMYYEY hide sequence

RefSeq Acc Id:	XP_008767197 ⟸ XM_008768975
- Peptide Label:	isoform X1
- UniProtKB:	D3ZIP9 (UniProtKB/TrEMBL), A6K1Z5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSWKPEMGLVSFEDIAVEFTWQEWQDLNEGQRTLYRDVMLENYSNLLFLGHCKTKPELIFNLEQ RLGSWIVEASHQSIPDFQKVNTLNETSPETKARHVCQVPLNSDTSEELAGIGNTCTVSTNCFSN QTVKSEDSLGMSPRKFTLWKDVYLHNDVDEVEVGEEPDDLNGTVKSVRHPERVSLYRFQSSQGY FQSLIPGKSFNTKAVLLTHKFNEYAKSLVDTAFIGKEMAQIRVKSFECNVSEIKCNKSDLNEND PVHEGEKHYKCSDFENPFIIESYLPKHKGQHEKLFVQKGYEFSQQSEVSLHQKIRRGKKTYECK ICGKCFYWKTSFNRHQSTHTGEKPYECTECSKAFCQKSHLTQHQRVHTGERPYICFECRKAFYR KSELTDHQRIHTGEKPYECKECGKAFCQKPQLTLHQRIHTGEKPYECAECGKAFSTKSYLTVHQ RTHTGEKPYECTVCRKSFICKSSFSHHWRTHTGEKPYECKQCMKTFYRKSGLTRHQRTHTGDKR YECQLCQKAFYCTSHLIVHQRTHTGEKPYECKECRKAFYDKSNLKRHQKIHTAKKASECKQSNK FFLSNTSQHQTMYYEY hide sequence

Ensembl Acc Id:

ENSRNOP00000072952 ⟸ ENSRNOT00000079221

Ensembl Acc Id:

ENSRNOP00000001784 ⟸ ENSRNOT00000001784

Ensembl Acc Id:

ENSRNOP00000084337 ⟸ ENSRNOT00000097091

Protein Domains

C2H2-type KRAB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZIP9-F1-model_v2	AlphaFold	D3ZIP9	1-592	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698477

Promoter ID:

EPDNEW_R9002

Type:

multiple initiation site

Name:

Zfp68_1

Description:

zinc finger protein 68

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	18,152,644 - 18,152,704	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310463	AgrOrtholog
BioCyc Gene	G2FUF-19869	BioCyc
Ensembl Genes	ENSRNOG00000001317	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001784	ENTREZGENE
	ENSRNOT00000001784.9	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	KRAB_dom_sf	UniProtKB/TrEMBL
	Krueppel-associated_box	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:304337	UniProtKB/TrEMBL
NCBI Gene	304337	ENTREZGENE
PANTHER	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN ZFP2	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zfp68	PhenoGen
PROSITE	KRAB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000001317	RatGTEx
SMART	KRAB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Krueppel-associated_box	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A6K1Z5	ENTREZGENE, UniProtKB/TrEMBL
	A6K1Z6	ENTREZGENE, UniProtKB/TrEMBL
	D3ZIP9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Zfp68	zinc finger protein 68	Zfp68_predicted	zinc finger protein 68 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Zfp68_predicted	zinc finger protein 68 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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