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Gene: Trim27 (tripartite motif-containing 27) Rattus norvegicus

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Symbol:

Trim27

Name:

tripartite motif-containing 27

RGD ID:

1310105

Description:

Predicted to enable identical protein binding activity; transcription coactivator activity; and ubiquitin-like protein transferase activity. Predicted to be involved in several processes, including defense response to other organism; negative regulation of metabolic process; and regulation of gene expression. Predicted to act upstream of or within negative regulation of gene expression, epigenetic and positive regulation of actin nucleation. Predicted to be located in endosome and nucleus. Predicted to be part of retromer complex. Predicted to be active in cytoplasm. Orthologous to human TRIM27 (tripartite motif containing 27); INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC291171; MGC189472; ret finger protein 1; ret finger protein 1 (mapped); Rfp1; Rfp1_mapped; tripartite motif protein 27; zinc finger protein RFP

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	48,233,999 - 48,246,348 (-)	NCBI		GRCr8
mRatBN7.2	17	43,538,282 - 43,550,633 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	43,538,285 - 43,550,643 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	45,602,338 - 45,614,707 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	50,361,433 - 50,373,802 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	44,845,531 - 44,857,874 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	45,613,863 - 45,626,212 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	45,613,864 - 45,626,212 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	57,844,089 - 57,856,503 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	51,192,286 - 51,204,942 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	51,195,447 - 51,214,144 (-)	NCBI
Celera	17	52,928,787 - 52,941,136 (+)	NCBI		Celera
Cytogenetic Map	17	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Trim27	Rat	megacolon		ISO	RGD:1320820	8554872	ClinVar Annotator: match by term: Megacolon	ClinVar	PMID:21681106

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Trim27	Rat	(+)-schisandrin B	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of TRIM27 mRNA]	CTD	PMID:31150632
Trim27	Rat	1,2-dimethylhydrazine	increases expression	ISO	RGD:1320821	6480464	1,2-Dimethylhydrazine results in increased expression of TRIM27 mRNA	CTD	PMID:22206623
Trim27	Rat	1-fluoro-2,4-dinitrobenzene	increases expression	ISO	RGD:1320820	6480464	Dinitrofluorobenzene results in increased expression of TRIM27 mRNA	CTD	PMID:23999411
Trim27	Rat	17alpha-ethynylestradiol	affects expression	ISO	RGD:1320821	6480464	Ethinyl Estradiol affects the expression of TRIM27 mRNA	CTD	PMID:17555576
Trim27	Rat	17alpha-ethynylestradiol	multiple interactions	ISO	RGD:1320821	6480464	[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of TRIM27 mRNA	CTD	PMID:17942748
Trim27	Rat	17alpha-ethynylestradiol	increases expression	ISO	RGD:1320821	6480464	Ethinyl Estradiol results in increased expression of TRIM27 mRNA	CTD	PMID:17942748
Trim27	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	RGD:1320821	6480464	[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of TRIM27 mRNA	CTD	PMID:17942748
Trim27	Rat	2,4-dinitrotoluene	affects expression	EXP		6480464	2,4-dinitrotoluene affects the expression of TRIM27 mRNA	CTD	PMID:21346803
Trim27	Rat	4-(ethoxymethylene)-2-phenyloxazol-5-one	increases expression	ISO	RGD:1320820	6480464	Oxazolone results in increased expression of TRIM27 mRNA	CTD	PMID:23999411
Trim27	Rat	4-hydroperoxycyclophosphamide	decreases expression	ISO	RGD:1320821	6480464	perfosfamide results in decreased expression of TRIM27 mRNA	CTD	PMID:19429390
Trim27	Rat	arsenous acid	multiple interactions	ISO	RGD:1320820	6480464	Arsenic Trioxide inhibits the reaction [4-aminophenylarsenoxide binds to TRIM27 protein]	CTD	PMID:26598702
Trim27	Rat	benzo[a]pyrene	increases methylation	ISO	RGD:1320820	6480464	Benzo(a)pyrene results in increased methylation of TRIM27 promoter	CTD	PMID:27901495
Trim27	Rat	benzo[a]pyrene diol epoxide I	decreases expression	ISO	RGD:1320820	6480464	7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide results in decreased expression of TRIM27 mRNA	CTD	PMID:19150397
Trim27	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of TRIM27 mRNA	CTD	PMID:34947998
Trim27	Rat	bisphenol A	decreases expression	ISO	RGD:1320820	6480464	bisphenol A results in decreased expression of TRIM27 protein	CTD	PMID:33376534
Trim27	Rat	butanal	increases methylation	ISO	RGD:1320820	6480464	butyraldehyde results in increased methylation of TRIM27 gene	CTD	PMID:30002397
Trim27	Rat	cadmium dichloride	decreases expression	ISO	RGD:1320820	6480464	Cadmium Chloride results in decreased expression of TRIM27 mRNA	CTD	PMID:38568856
Trim27	Rat	CGP 52608	multiple interactions	ISO	RGD:1320820	6480464	CGP 52608 promotes the reaction [RORA protein binds to TRIM27 gene]	CTD	PMID:28238834
Trim27	Rat	chlorpyrifos	increases expression	ISO	RGD:1320821	6480464	Chlorpyrifos results in increased expression of TRIM27 mRNA	CTD	PMID:37019170
Trim27	Rat	choline	multiple interactions	ISO	RGD:1320821	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression more ...	CTD	PMID:20938992
Trim27	Rat	cyclosporin A	increases expression	ISO	RGD:1320820	6480464	Cyclosporine results in increased expression of TRIM27 mRNA	CTD	PMID:20106945\|PMID:27989131
Trim27	Rat	diarsenic trioxide	multiple interactions	ISO	RGD:1320820	6480464	Arsenic Trioxide inhibits the reaction [4-aminophenylarsenoxide binds to TRIM27 protein]	CTD	PMID:26598702
Trim27	Rat	dibutyl phthalate	increases expression	ISO	RGD:1320821	6480464	Dibutyl Phthalate results in increased expression of TRIM27 mRNA	CTD	PMID:21266533
Trim27	Rat	Diisodecyl phthalate	decreases expression	ISO	RGD:1320821	6480464	diisodecyl phthalate results in decreased expression of TRIM27 mRNA	CTD	PMID:25270620
Trim27	Rat	doxorubicin	increases expression	ISO	RGD:1320820	6480464	Doxorubicin results in increased expression of TRIM27 mRNA	CTD	PMID:29803840
Trim27	Rat	elemental selenium	decreases expression	ISO	RGD:1320820	6480464	Selenium results in decreased expression of TRIM27 mRNA	CTD	PMID:19244175
Trim27	Rat	epoxiconazole	increases expression	ISO	RGD:1320821	6480464	epoxiconazole results in increased expression of TRIM27 mRNA	CTD	PMID:35436446
Trim27	Rat	flutamide	increases expression	EXP		6480464	Flutamide results in increased expression of TRIM27 mRNA	CTD	PMID:24136188
Trim27	Rat	folic acid	multiple interactions	ISO	RGD:1320821	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression more ...	CTD	PMID:20938992
Trim27	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of TRIM27 mRNA	CTD	PMID:22061828
Trim27	Rat	glafenine	increases expression	EXP		6480464	Glafenine results in increased expression of TRIM27 mRNA	CTD	PMID:24136188
Trim27	Rat	heptanal	increases methylation	ISO	RGD:1320820	6480464	heptanal results in increased methylation of TRIM27 gene	CTD	PMID:30002397
Trim27	Rat	hexanal	increases methylation	ISO	RGD:1320820	6480464	n-hexanal results in increased methylation of TRIM27 gene	CTD	PMID:30002397
Trim27	Rat	hypochlorous acid	decreases expression	ISO	RGD:1320821	6480464	Hypochlorous Acid results in decreased expression of TRIM27 mRNA	CTD	PMID:19376150
Trim27	Rat	iron atom	increases expression	EXP		6480464	Iron deficiency results in increased expression of TRIM27 mRNA	CTD	PMID:16629162
Trim27	Rat	iron(0)	increases expression	EXP		6480464	Iron deficiency results in increased expression of TRIM27 mRNA	CTD	PMID:16629162
Trim27	Rat	ivermectin	decreases expression	ISO	RGD:1320820	6480464	Ivermectin results in decreased expression of TRIM27 protein	CTD	PMID:32959892
Trim27	Rat	L-methionine	multiple interactions	ISO	RGD:1320821	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression more ...	CTD	PMID:20938992
Trim27	Rat	lead nitrate	multiple interactions	ISO	RGD:1320821	6480464	lead nitrate affects the reaction [TRIM27 affects the expression of MT1 mRNA]; lead nitrate affects more ...	CTD	PMID:11891201
Trim27	Rat	leflunomide	decreases expression	ISO	RGD:1320820	6480464	leflunomide results in decreased expression of TRIM27 mRNA	CTD	PMID:28988120
Trim27	Rat	methidathion	increases expression	ISO	RGD:1320821	6480464	methidathion results in increased expression of TRIM27 mRNA	CTD	PMID:34813904
Trim27	Rat	methyl methanesulfonate	decreases expression	ISO	RGD:1320820	6480464	Methyl Methanesulfonate results in decreased expression of TRIM27 mRNA	CTD	PMID:23649840
Trim27	Rat	nickel atom	decreases expression	ISO	RGD:1320820	6480464	Nickel results in decreased expression of TRIM27 mRNA	CTD	PMID:23195993
Trim27	Rat	nitrates	multiple interactions	ISO	RGD:1320821	6480464	[Particulate Matter results in increased abundance of Nitrates] which results in increased expression of TRIM27 more ...	CTD	PMID:35964746
Trim27	Rat	nonanal	increases methylation	ISO	RGD:1320820	6480464	nonanal results in increased methylation of TRIM27 gene	CTD	PMID:30002397
Trim27	Rat	octanal	increases methylation	ISO	RGD:1320820	6480464	caprylic aldehyde results in increased methylation of TRIM27 gene	CTD	PMID:30002397
Trim27	Rat	paracetamol	affects expression	ISO	RGD:1320821	6480464	Acetaminophen affects the expression of TRIM27 mRNA	CTD	PMID:17562736
Trim27	Rat	paracetamol	decreases expression	ISO	RGD:1320820	6480464	Acetaminophen results in decreased expression of TRIM27 mRNA	CTD	PMID:21420995
Trim27	Rat	pentanal	increases methylation	ISO	RGD:1320820	6480464	pentanal results in increased methylation of TRIM27 gene	CTD	PMID:30002397
Trim27	Rat	perfluorohexanesulfonic acid	decreases expression	ISO	RGD:1320821	6480464	perfluorohexanesulfonic acid results in decreased expression of TRIM27 mRNA	CTD	PMID:37995155
Trim27	Rat	pirinixic acid	multiple interactions	ISO	RGD:1320820	6480464	[pirinixic acid binds to and results in increased activity of PPARA protein] which results in more ...	CTD	PMID:19710929
Trim27	Rat	propanal	increases methylation	ISO	RGD:1320820	6480464	propionaldehyde results in increased methylation of TRIM27 gene	CTD	PMID:30002397
Trim27	Rat	propiconazole	increases expression	ISO	RGD:1320821	6480464	propiconazole results in increased expression of TRIM27 mRNA	CTD	PMID:21278054
Trim27	Rat	resveratrol	multiple interactions	ISO	RGD:1320820	6480464	[Plant Extracts co-treated with Resveratrol] results in increased expression of TRIM27 mRNA	CTD	PMID:23557933
Trim27	Rat	selenium atom	decreases expression	ISO	RGD:1320820	6480464	Selenium results in decreased expression of TRIM27 mRNA	CTD	PMID:19244175
Trim27	Rat	tamoxifen	affects expression	ISO	RGD:1320821	6480464	Tamoxifen affects the expression of TRIM27 mRNA	CTD	PMID:17555576
Trim27	Rat	temozolomide	increases expression	ISO	RGD:1320820	6480464	Temozolomide results in increased expression of TRIM27 mRNA	CTD	PMID:31758290
Trim27	Rat	tetrachloromethane	increases expression	EXP		6480464	Carbon Tetrachloride results in increased expression of TRIM27 mRNA	CTD	PMID:31150632
Trim27	Rat	tetrachloromethane	increases expression	ISO	RGD:1320821	6480464	Carbon Tetrachloride results in increased expression of TRIM27 mRNA	CTD	PMID:31919559
Trim27	Rat	tetrachloromethane	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of TRIM27 mRNA]	CTD	PMID:31150632
Trim27	Rat	thiram	decreases expression	ISO	RGD:1320820	6480464	Thiram results in decreased expression of TRIM27 mRNA	CTD	PMID:38568856
Trim27	Rat	titanium dioxide	increases expression	ISO	RGD:1320821	6480464	titanium dioxide results in increased expression of TRIM27 mRNA	CTD	PMID:23557971
Trim27	Rat	titanium dioxide	increases methylation	ISO	RGD:1320821	6480464	titanium dioxide results in increased methylation of TRIM27 gene	CTD	PMID:35295148
Trim27	Rat	titanium dioxide	decreases methylation	ISO	RGD:1320821	6480464	titanium dioxide results in decreased methylation of TRIM27 enhancer	CTD	PMID:35295148
Trim27	Rat	trichostatin A	affects expression	ISO	RGD:1320820	6480464	trichostatin A affects the expression of TRIM27 mRNA	CTD	PMID:28542535
Trim27	Rat	trimellitic anhydride	increases expression	ISO	RGD:1320821	6480464	trimellitic anhydride results in increased expression of TRIM27 mRNA	CTD	PMID:19042947
Trim27	Rat	triphenyl phosphate	affects expression	ISO	RGD:1320820	6480464	triphenyl phosphate affects the expression of TRIM27 mRNA	CTD	PMID:37042841
Trim27	Rat	triptonide	decreases expression	ISO	RGD:1320821	6480464	triptonide results in decreased expression of TRIM27 mRNA	CTD	PMID:33045310
Trim27	Rat	troglitazone	decreases expression	ISO	RGD:1320821	6480464	troglitazone results in decreased expression of TRIM27 mRNA	CTD	PMID:28973697
Trim27	Rat	valproic acid	decreases expression	ISO	RGD:1320820	6480464	Valproic Acid results in decreased expression of TRIM27 mRNA	CTD	PMID:23179753
Trim27	Rat	valproic acid	affects expression	ISO	RGD:1320820	6480464	Valproic Acid affects the expression of TRIM27 mRNA	CTD	PMID:25979313
Trim27	Rat	vinclozolin	increases methylation	EXP		6480464	vinclozolin results in increased methylation of TRIM27 gene	CTD	PMID:31682807
Trim27	Rat	vitamin E	decreases expression	ISO	RGD:1320820	6480464	Vitamin E results in decreased expression of TRIM27 mRNA	CTD	PMID:19244175

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Trim27	Rat	Arp2/3 complex-mediated actin nucleation	involved_in	ISO	RGD:1320820	1624291	PMID:23452853	RGD	PMID:23452853
Trim27	Rat	Arp2/3 complex-mediated actin nucleation	involved_in	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	innate immune response	involved_in	ISO	RGD:1320820	1624291	PMID:18248090	RGD	PMID:18248090
Trim27	Rat	innate immune response	involved_in	IEA	UniProtKB:Q62158\|ensembl:ENSMUSP00000152730	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	innate immune response	involved_in	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	innate immune response	involved_in	ISO	RGD:1320821	1624291	PMID:18248090	RGD	PMID:18248090
Trim27	Rat	innate immune response	involved_in	IBA	MGI:1338757\|MGI:2137355\|MGI:2385051\|MGI:97904\|PANTHER:PTN000762195\|UniProtKB:O15553\|UniProtKB:O60858\|UniProtKB:P14373\|UniProtKB:P19474\|UniProtKB:Q0PF16\|UniProtKB:Q12899\|UniProtKB:Q14142\|UniProtKB:Q96F44\|UniProtKB:Q9BVG3\|UniProtKB:Q9BZY9\|UniProtKB:Q9C019\|UniProtKB:Q9C029\|UniProtKB:Q9C030\|UniProtKB:Q9C035\|UniProtKB:Q9UPQ4	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Trim27	Rat	negative regulation of adaptive immune response	involved_in	ISO	RGD:1320820	1624291	PMID:22128329	RGD	PMID:22128329
Trim27	Rat	negative regulation of adaptive immune response	involved_in	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	negative regulation of autophagy	involved_in	ISO	RGD:1320820	1624291	PMID:35670107	RGD	PMID:35670107
Trim27	Rat	negative regulation of autophagy	involved_in	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	negative regulation of calcium ion import	involved_in	ISO	RGD:1320820	1624291	PMID:22128329	RGD	PMID:22128329
Trim27	Rat	negative regulation of calcium ion import	involved_in	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	negative regulation of gene expression, epigenetic	acts_upstream_of_or_within	ISO	RGD:1320820	1624291	PMID:10976108	RGD	PMID:10976108
Trim27	Rat	negative regulation of gene expression, epigenetic	acts_upstream_of_or_within	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	negative regulation of interleukin-2 production	involved_in	ISO	RGD:1320820	1624291	PMID:22128329	RGD	PMID:22128329
Trim27	Rat	negative regulation of interleukin-2 production	involved_in	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	negative regulation of protein kinase activity	involved_in	ISO	RGD:1320820	1624291	PMID:22128329	RGD	PMID:22128329
Trim27	Rat	negative regulation of transcription by RNA polymerase II	acts_upstream_of_or_within	ISO	RGD:1320820	1624291	PMID:10976108	RGD	PMID:10976108
Trim27	Rat	negative regulation of transcription by RNA polymerase II	acts_upstream_of_or_within	IEA	UniProtKB:Q62158\|ensembl:ENSMUSP00000152730	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	negative regulation of transcription by RNA polymerase II	acts_upstream_of_or_within	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	negative regulation of transcription by RNA polymerase II	acts_upstream_of_or_within	ISO	RGD:1320821	1624291	MGI:98480\|MGI:98510 PMID:16007160	RGD	PMID:16007160
Trim27	Rat	negative regulation of transcription by RNA polymerase II	involved_in	IBA	MGI:97904\|PANTHER:PTN000646556\|UniProtKB:P14373	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Trim27	Rat	negative regulation of tumor necrosis factor production	involved_in	ISO	RGD:1320820	1624291	PMID:22128329	RGD	PMID:22128329
Trim27	Rat	negative regulation of tumor necrosis factor production	involved_in	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	negative regulation of type I interferon production	involved_in	ISO	RGD:1320820	1624291	PMID:26358190	RGD	PMID:26358190
Trim27	Rat	negative regulation of type I interferon production	involved_in	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	negative regulation of viral transcription	involved_in	ISO	RGD:1320820	1624291	PMID:18248090	RGD	PMID:18248090
Trim27	Rat	negative regulation of viral transcription	involved_in	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	negative regulation of viral transcription	involved_in	IBA	MGI:97904\|PANTHER:PTN000646556\|UniProtKB:P14373	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Trim27	Rat	negative regulation of viral transcription	involved_in	IEA	UniProtKB:Q62158\|ensembl:ENSMUSP00000152730	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	negative regulation of viral transcription	involved_in	ISO	RGD:1320821	1624291	PMID:18248090	RGD	PMID:18248090
Trim27	Rat	positive regulation of actin nucleation	acts_upstream_of_or_within	ISO	RGD:1320821	1624291	MGI:1916017 PMID:23452853	RGD	PMID:23452853
Trim27	Rat	positive regulation of actin nucleation	acts_upstream_of_or_within	IEA	UniProtKB:Q62158\|ensembl:ENSMUSP00000152730	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	positive regulation of DNA-binding transcription factor activity	involved_in	ISO	RGD:1320820	1624291	PMID:23077300	RGD	PMID:23077300
Trim27	Rat	positive regulation of DNA-templated transcription	involved_in	IEA	GO:0003713	1600115	GO_REF:0000108	GOC	GO_REF:0000108
Trim27	Rat	positive regulation of type II interferon production	involved_in	ISO	RGD:1320820	1624291	PMID:22128329	RGD	PMID:22128329
Trim27	Rat	positive regulation of type II interferon production	involved_in	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	protein K63-linked ubiquitination	involved_in	ISO	RGD:1320820	1624291	PMID:23452853	RGD	PMID:23452853
Trim27	Rat	protein K63-linked ubiquitination	involved_in	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	retrograde transport, endosome to Golgi	involved_in	ISO	RGD:1320820	1624291	PMID:23452853	RGD	PMID:23452853
Trim27	Rat	retrograde transport, endosome to Golgi	involved_in	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	suppression of viral release by host	involved_in	ISO	RGD:1320821	1624291	PMID:18248090	RGD	PMID:18248090
Trim27	Rat	suppression of viral release by host	involved_in	IEA	UniProtKB:Q62158\|ensembl:ENSMUSP00000152730	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Trim27	Rat	cytoplasm	is_active_in	IBA	MGI:106657\|MGI:1337056\|MGI:1338757\|MGI:1913847\|MGI:1914104\|MGI:1923931\|MGI:2137352\|MGI:2137353\|MGI:2137355\|MGI:2149590\|MGI:3612190\|MGI:97904\|MGI:98178\|PANTHER:PTN007774218\|RGD:1304877\|RGD:619964\|RGD:708400\|UniProtKB:O15553\|UniProtKB:O60858\|UniProtKB:O75677\|UniProtKB:P14373\|UniProtKB:P19474\|UniProtKB:Q0PF16\|UniProtKB:Q12899\|UniProtKB:Q14142\|UniProtKB:Q6AZZ1\|UniProtKB:Q6P9F5\|UniProtKB:Q86UV6\|UniProtKB:Q86UV7\|UniProtKB:Q86WT6\|UniProtKB:Q86XT4\|UniProtKB:Q8IWZ4\|UniProtKB:Q8IYM9\|UniProtKB:Q969Q1\|UniProtKB:Q96A61\|UniProtKB:Q96F44\|UniProtKB:Q9BVG3\|UniProtKB:Q9BYJ4\|UniProtKB:Q9BZY9\|UniProtKB:Q9C029\|UniProtKB:Q9C030\|UniProtKB:Q9C035\|UniProtKB:Q9C037\|UniProtKB:Q9HCM9	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Trim27	Rat	cytoplasm	located_in	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Trim27	Rat	cytoplasm	located_in	ISO	RGD:1320821	1624291	PMID:11331580	RGD	PMID:11331580
Trim27	Rat	cytoplasm	located_in	ISO	RGD:1320820	1624291	PMID:17156811	RGD	PMID:17156811
Trim27	Rat	cytoplasm	located_in	IEA	ARBA:ARBA00026971	1600115	GO_REF:0000117	UniProt	GO_REF:0000117
Trim27	Rat	cytoplasm	located_in	IEA	UniProtKB:Q62158\|ensembl:ENSMUSP00000152730	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	cytosol	located_in	IEA	GO:0042147	1600115	GO_REF:0000108	GOC	GO_REF:0000108
Trim27	Rat	endosome	located_in	ISO	RGD:1320820	1624291	PMID:23452853	RGD	PMID:23452853
Trim27	Rat	endosome	located_in	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	fibrillar center	located_in	IEA	UniProtKB:A0A1U9X8R9\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	fibrillar center	located_in	ISO	RGD:1320820\|UniProtKB:P14373-1\|UniProtKB:P14373-2	1624291		RGD	GO_REF:0000052
Trim27	Rat	fibrillar center	located_in	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	nuclear membrane	located_in	ISO	RGD:1320820	1624291	PMID:10976108	RGD	PMID:10976108
Trim27	Rat	nuclear membrane	located_in	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	nucleolus	located_in	ISO	RGD:1320820\|UniProtKB:P14373-1\|UniProtKB:P14373-2	1624291		RGD	GO_REF:0000052
Trim27	Rat	nucleolus	located_in	IEA	UniProtKB:A0A1U9X8R9\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	nucleolus	located_in	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	nucleoplasm	located_in	ISO	RGD:1320820	1624291	PMID:10976108	RGD	PMID:10976108
Trim27	Rat	nucleoplasm	located_in	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	nucleoplasm	located_in	IEA	UniProtKB:A0A1U9X8R9\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	nucleoplasm	located_in	ISO	RGD:1320820\|UniProtKB:P14373-1\|UniProtKB:P14373-2	1624291		RGD	GO_REF:0000052
Trim27	Rat	nucleus	located_in	ISO	RGD:1320820	1624291	PMID:17156811	RGD	PMID:17156811
Trim27	Rat	nucleus	located_in	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	retromer complex	located_in	ISO	RGD:1320820	1624291	PMID:23452853	RGD	PMID:23452853
Trim27	Rat	retromer complex	located_in	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Trim27	Rat	identical protein binding	enables	ISO	RGD:1320820	1624291	UniProtKB:P14373 PMID:17156811, PMID:22829933, PMID:25416956, PMID:27107012	RGD	PMID:17156811\|PMID:22829933\|PMID:25416956\|PMID:27107012
Trim27	Rat	identical protein binding	enables	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Trim27	Rat	protein binding	enables	ISO	RGD:1320821	1624291	PR:P22091\|UniProtKB:Q8CIH5 PMID:15102471, PMID:16007160	RGD	PMID:15102471\|PMID:16007160
Trim27	Rat	protein binding	enables	ISO	RGD:1320820	1624291	UniProtKB:A0A0S2Z4G9\|UniProtKB:A0A0S2Z4M1\|UniProtKB:A0A0S2Z4Q4\|UniProtKB:A0A0S2Z5X4\|UniProtKB:A0A0S2Z6H0\|UniProtKB:A0A0S2Z6M9\|UniProtKB:A0A0S2Z6P0\|UniProtKB:A8K0Z3\|UniProtKB:A8K571\|UniProtKB:A8K932\|UniProtKB:C0H5X2\|UniProtKB:D3DUQ6\|UniProtKB:E5KN55\|UniProtKB:G3V1X1\|UniProtKB:O00311\|UniProtKB:O00506\|UniProtKB:O00560\|UniProtKB:O00750\|UniProtKB:O14530\|UniProtKB:O14964\|UniProtKB:O14966\|UniProtKB:O15160\|UniProtKB:O15169\|UniProtKB:O15371\|UniProtKB:O43247-2\|UniProtKB:O43602\|UniProtKB:O43639\|UniProtKB:O43809\|UniProtKB:O60336\|UniProtKB:O60437\|UniProtKB:O60504\|UniProtKB:O60573\|UniProtKB:O60941-5\|UniProtKB:O75146-2\|UniProtKB:O75604\|UniProtKB:O75716\|UniProtKB:O76041\|UniProtKB:O95363\|UniProtKB:O95678\|UniProtKB:O95817\|UniProtKB:O95872\|UniProtKB:P00540\|UniProtKB:P00973\|UniProtKB:P00973-2\|UniProtKB:P04264\|UniProtKB:P06730\|UniProtKB:P08579\|UniProtKB:P08631-2\|UniProtKB:P09012\|UniProtKB:P09067\|UniProtKB:P0CG20\|UniProtKB:P0DTD1-PRO_0000449631\|UniProtKB:P0DTD1-PRO_0000449633\|UniProtKB:P10606\|UniProtKB:P12035\|UniProtKB:P14136\|UniProtKB:P15622-3\|UniProtKB:P17482\|UniProtKB:P18075\|UniProtKB:P18615\|UniProtKB:P19447\|UniProtKB:P20618\|UniProtKB:P23025\|UniProtKB:P25786\|UniProtKB:P25800\|UniProtKB:P26196\|UniProtKB:P28702-3\|UniProtKB:P29590-4\|UniProtKB:P31273\|UniProtKB:P33993\|UniProtKB:P38919\|UniProtKB:P47897\|UniProtKB:P49720\|UniProtKB:P49760\|UniProtKB:P55040\|UniProtKB:P56282\|UniProtKB:P56524-2\|UniProtKB:P57075-2\|UniProtKB:P60228\|UniProtKB:P61024\|UniProtKB:P61086\|UniProtKB:P61968\|UniProtKB:P62993\|UniProtKB:Q01546\|UniProtKB:Q02930-3\|UniProtKB:Q03252\|UniProtKB:Q03989\|UniProtKB:Q05516\|UniProtKB:Q05CH4\|UniProtKB:Q06250\|UniProtKB:Q07002\|UniProtKB:Q08117\|UniProtKB:Q08426\|UniProtKB:Q0P5Q0\|UniProtKB:Q12774\|UniProtKB:Q12905\|UniProtKB:Q13131\|UniProtKB:Q13418\|UniProtKB:Q13526\|UniProtKB:Q13671\|UniProtKB:Q13895\|UniProtKB:Q14005-2\|UniProtKB:Q14119\|UniProtKB:Q14449\|UniProtKB:Q14511\|UniProtKB:Q14657\|UniProtKB:Q14687\|UniProtKB:Q14847\|UniProtKB:Q15040\|UniProtKB:Q15560\|UniProtKB:Q15561\|UniProtKB:Q15735\|UniProtKB:Q15788\|UniProtKB:Q15911-2\|UniProtKB:Q15937\|UniProtKB:Q16512\|UniProtKB:Q16527\|UniProtKB:Q17RB8\|UniProtKB:Q2KHT3-1\|UniProtKB:Q2TBE0\|UniProtKB:Q32MH5\|UniProtKB:Q3B820\|UniProtKB:Q3SY00\|UniProtKB:Q494U1\|UniProtKB:Q4G0R1\|UniProtKB:Q4G176\|UniProtKB:Q53FD0\|UniProtKB:Q53HC0\|UniProtKB:Q548N1\|UniProtKB:Q5JRA6-2\|UniProtKB:Q5T7P8-2\|UniProtKB:Q5TAP6\|UniProtKB:Q5VU62\|UniProtKB:Q63HK5\|UniProtKB:Q63HN8-6\|UniProtKB:Q68D86\|UniProtKB:Q6FGU7\|UniProtKB:Q6NSM0\|UniProtKB:Q6NXQ0\|UniProtKB:Q6NYC8\|UniProtKB:Q6ZVT0\|UniProtKB:Q7L273\|UniProtKB:Q7L5A3\|UniProtKB:Q7L8L6\|UniProtKB:Q7Z3B3\|UniProtKB:Q7Z3I7\|UniProtKB:Q7Z3S9\|UniProtKB:Q7Z6K5\|UniProtKB:Q86U06\|UniProtKB:Q86UY5\|UniProtKB:Q86VF2-5\|UniProtKB:Q86XT4\|UniProtKB:Q86Y33\|UniProtKB:Q86Y33-5\|UniProtKB:Q86YD7\|UniProtKB:Q8IUQ4\|UniProtKB:Q8IVS8\|UniProtKB:Q8IVT4\|UniProtKB:Q8IVW4\|UniProtKB:Q8IWZ5\|UniProtKB:Q8IXS8\|UniProtKB:Q8IYD8\|UniProtKB:Q8IYI6\|UniProtKB:Q8IYR0\|UniProtKB:Q8IZW8\|UniProtKB:Q8N443\|UniProtKB:Q8N5A5\|UniProtKB:Q8N5A5-2\|UniProtKB:Q8N5M1\|UniProtKB:Q8N715\|UniProtKB:Q8N8B7-2\|UniProtKB:Q8NA54\|UniProtKB:Q8NE01\|UniProtKB:Q8NEC5\|UniProtKB:Q8NFT6-2\|UniProtKB:Q8NHY3\|UniProtKB:Q8TAE8\|UniProtKB:Q8TAU3\|UniProtKB:Q8TBB1\|UniProtKB:Q8TCE9\|UniProtKB:Q8TCX5\|UniProtKB:Q8TD31-3\|UniProtKB:Q8TDQ7\|UniProtKB:Q8TDQ7-2\|UniProtKB:Q8TES7-6\|UniProtKB:Q8WTP8\|UniProtKB:Q8WUK0\|UniProtKB:Q8WWY3\|UniProtKB:Q8WXI9\|UniProtKB:Q92917\|UniProtKB:Q92993\|UniProtKB:Q93009\|UniProtKB:Q969S2\|UniProtKB:Q969S9\|UniProtKB:Q969U6\|UniProtKB:Q96A72\|UniProtKB:Q96BZ8\|UniProtKB:Q96C98\|UniProtKB:Q96CS2\|UniProtKB:Q96E35\|UniProtKB:Q96EV8\|UniProtKB:Q96FE5\|UniProtKB:Q96FJ0\|UniProtKB:Q96FN4\|UniProtKB:Q96FQ7\|UniProtKB:Q96FV9\|UniProtKB:Q96GM5\|UniProtKB:Q96HA1-2\|UniProtKB:Q96HA8\|UniProtKB:Q96IQ9\|UniProtKB:Q96IZ5\|UniProtKB:Q96JP2\|UniProtKB:Q96PC2\|UniProtKB:Q96PV0\|UniProtKB:Q96PV7-2\|UniProtKB:Q96QH2\|UniProtKB:Q96SQ5\|UniProtKB:Q99572\|UniProtKB:Q99633\|UniProtKB:Q99853\|UniProtKB:Q99933\|UniProtKB:Q99958\|UniProtKB:Q9BQ24\|UniProtKB:Q9BQ89\|UniProtKB:Q9BRG1\|UniProtKB:Q9BRU9\|UniProtKB:Q9BSH4\|UniProtKB:Q9BSJ6\|UniProtKB:Q9BSW7\|UniProtKB:Q9BT92\|UniProtKB:Q9BTL3\|UniProtKB:Q9BUI4\|UniProtKB:Q9BUZ4\|UniProtKB:Q9BVG8\|UniProtKB:Q9BVV2\|UniProtKB:Q9BW85\|UniProtKB:Q9BWG6\|UniProtKB:Q9BWT7\|UniProtKB:Q9BXS5\|UniProtKB:Q9BXY8\|UniProtKB:Q9BYI3\|UniProtKB:Q9C086\|UniProtKB:Q9GZM8\|UniProtKB:Q9GZT8\|UniProtKB:Q9GZV7\|UniProtKB:Q9H0A9\|UniProtKB:Q9H0A9-2\|UniProtKB:Q9H0B3\|UniProtKB:Q9H0I2\|UniProtKB:Q9H0K6\|UniProtKB:Q9H0W8\|UniProtKB:Q9H3S7\|UniProtKB:Q9H6L4\|UniProtKB:Q9H788\|UniProtKB:Q9H788-2\|UniProtKB:Q9H8E8\|UniProtKB:Q9HC29\|UniProtKB:Q9HC52\|UniProtKB:Q9HC98\|UniProtKB:Q9HC98-4\|UniProtKB:Q9NNX1\|UniProtKB:Q9NQ50\|UniProtKB:Q9NQL9\|UniProtKB:Q9NR81\|UniProtKB:Q9NRI5\|UniProtKB:Q9NU19\|UniProtKB:Q9NUQ8\|UniProtKB:Q9NVE4\|UniProtKB:Q9NVL8\|UniProtKB:Q9NWS9-2\|UniProtKB:Q9NWV8\|UniProtKB:Q9NX63\|UniProtKB:Q9NZ43\|UniProtKB:Q9NZL9\|UniProtKB:Q9NZV6\|UniProtKB:Q9P0T4\|UniProtKB:Q9P2K3\|UniProtKB:Q9UBL6-2\|UniProtKB:Q9UHP6\|UniProtKB:Q9UI95\|UniProtKB:Q9UJ55\|UniProtKB:Q9UJV3-2\|UniProtKB:Q9UJX2\|UniProtKB:Q9UK33\|UniProtKB:Q9UK41\|UniProtKB:Q9UL15\|UniProtKB:Q9UM82\|UniProtKB:Q9Y217\|UniProtKB:Q9Y223-2\|UniProtKB:Q9Y2B5\|UniProtKB:Q9Y2J4-4\|UniProtKB:Q9Y316\|UniProtKB:Q9Y3C4\|UniProtKB:Q9Y4X0\|UniProtKB:Q9Y5B8\|UniProtKB:Q9Y6B2\|UniProtKB:Q9Y6W3 PMID:10504338, PMID:15837424, PMID:16189514, PMID:20864041, PMID:21516116, PMID:22128329, PMID:22829933, PMID:23452853, PMID:24144979, PMID:24722188, PMID:25416956, PMID:25910212, PMID:26365382, more ...	RGD	PMID:10504338\|PMID:15837424\|PMID:16189514\|PMID:20864041\|PMID:21516116\|PMID:22128329\|PMID:22829933\|PMID:23452853\|PMID:24144979\|PMID:24722188\|PMID:25416956\|PMID:25910212\|PMID:26365382\|PMID:26496610\|PMID:26871637\|PMID:27107012\|PMID:29892012\|PMID:31413325\|PMID:31515488\|PMID:32296183\|PMID:32707033\|PMID:32814053\|PMID:33961781\|PMID:36217029\|PMID:36217030\|PMID:36538041\|PMID:9570750
Trim27	Rat	SUMO transferase activity	enables	ISO	RGD:1320820	1624291	PMID:12393906, PMID:20972456	RGD	PMID:12393906\|PMID:20972456
Trim27	Rat	transcription coactivator activity	enables	ISO	RGD:1320820	1624291	PMID:23077300	RGD	PMID:23077300
Trim27	Rat	transcription coactivator activity	enables	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	ubiquitin protein ligase activity	enables	ISO	RGD:1320820	1624291	PMID:22829933, PMID:23419514, PMID:26358190, PMID:35670107	RGD	PMID:22829933\|PMID:23419514\|PMID:26358190\|PMID:35670107
Trim27	Rat	ubiquitin protein ligase activity	enables	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	ubiquitin protein ligase activity	enables	IBA	MGI:2137355\|MGI:2385051\|MGI:2447992\|MGI:2684862\|MGI:2684869\|MGI:3612190\|PANTHER:PTN007774218\|UniProtKB:P14373\|UniProtKB:P19474\|UniProtKB:Q12899\|UniProtKB:Q86WT6\|UniProtKB:Q8IYM9\|UniProtKB:Q8WV44\|UniProtKB:Q969Q1\|UniProtKB:Q96A61\|UniProtKB:Q9BVG3\|UniProtKB:Q9BYV6\|UniProtKB:Q9BZY9\|UniProtKB:Q9C029\|UniProtKB:Q9C030	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Trim27	Rat	ubiquitin-protein transferase activity	enables	ISO	RGD:1320820	1624291	PMID:22128329, PMID:23452853	RGD	PMID:22128329\|PMID:23452853
Trim27	Rat	ubiquitin-protein transferase activity	enables	IEA	UniProtKB:P14373\|ensembl:ENSP00000366404	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim27	Rat	zinc ion binding	enables	IEA	InterPro:IPR000315\|InterPro:IPR020457	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Trim27	Rat	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

#	Reference Title	Reference Citation
1.	The Ret finger protein induces apoptosis via its RING finger-B box-coiled-coil motif.	Dho SH and Kwon KS, J Biol Chem 2003 Aug 22;278(34):31902-8. Epub 2003 Jun 13.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Mapping of the Olf89 and Rfp genes to the rat genome: comparison with the mouse and human and new insights into the evolution of the rodent genome.	Szpirer C, etal., Cytogenet Cell Genet 1997;78(2):137-9.

PMID:10976108	PMID:11331580	PMID:12477932	PMID:16007160	PMID:17156811	PMID:18248090	PMID:22128329	PMID:22829933	PMID:23077300	PMID:23419514	PMID:23452853	PMID:25223908
PMID:25416956	PMID:27107012	PMID:35311628	PMID:36796734

Trim27
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	48,233,999 - 48,246,348 (-)	NCBI		GRCr8
mRatBN7.2	17	43,538,282 - 43,550,633 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	43,538,285 - 43,550,643 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	45,602,338 - 45,614,707 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	50,361,433 - 50,373,802 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	44,845,531 - 44,857,874 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	45,613,863 - 45,626,212 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	45,613,864 - 45,626,212 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	57,844,089 - 57,856,503 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	51,192,286 - 51,204,942 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	51,195,447 - 51,214,144 (-)	NCBI
Celera	17	52,928,787 - 52,941,136 (+)	NCBI		Celera
Cytogenetic Map	17	q11	NCBI

TRIM27
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	28,903,002 - 28,923,985 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	28,903,002 - 28,923,988 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	28,870,779 - 28,891,762 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	28,978,758 - 28,999,747 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	28,978,758 - 28,999,744	NCBI
Celera	6	30,476,904 - 30,497,881 (-)	NCBI		Celera
Cytogenetic Map	6	p22.1	NCBI
HuRef	6	28,678,679 - 28,699,726 (-)	NCBI		HuRef
CHM1_1	6	28,873,036 - 28,894,024 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	28,777,794 - 28,798,769 (-)	NCBI		T2T-CHM13v2.0

Trim27
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	21,363,570 - 21,378,893 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	21,363,615 - 21,378,894 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	21,179,450 - 21,194,723 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	21,179,445 - 21,194,724 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	21,271,828 - 21,284,726 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	21,187,827 - 21,200,322 (+)	NCBI		MGSCv36	mm8
Celera	13	21,444,935 - 21,457,832 (+)	NCBI		Celera
Cytogenetic Map	13	A3.1	NCBI
cM Map	13	7.67	NCBI

Trim27
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955465	13,890,900 - 13,903,016 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955465	13,891,001 - 13,902,767 (-)	NCBI	ChiLan1.0	ChiLan1.0

TRIM27
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	43,536,777 - 43,558,608 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	39,537,301 - 39,558,344 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	28,722,505 - 28,743,484 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	29,390,423 - 29,411,308 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	29,390,423 - 29,411,308 (-)	Ensembl	panpan1.1		panPan2

TRIM27
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	25,904,381 - 25,922,531 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	25,905,396 - 25,923,336 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	25,777,587 - 25,795,612 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	26,199,826 - 26,217,843 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	35	26,199,828 - 26,217,885 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	35	25,862,428 - 25,880,441 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	25,918,116 - 25,936,647 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	27,389,980 - 27,408,261 (-)	NCBI		UU_Cfam_GSD_1.0

Trim27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	29,181,649 - 29,203,486 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936914	245,283 - 263,435 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936914	245,348 - 263,060 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRIM27
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa10.2	7	24,432,798 - 24,451,382 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRIM27
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	43,647,965 - 43,670,945 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	43,647,951 - 43,670,978 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	28,591,242 - 28,614,234 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Trim27
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624756	24,897,206 - 24,908,478 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624756	24,897,206 - 24,908,449 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Trim27
34 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	124
Count of miRNA genes:	82
Interacting mature miRNAs:	109
Transcripts:	ENSRNOT00000041671
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631497	Bp98	Blood pressure QTL 98	3.66		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	41354651	60463643	Rat
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	69599340	Rat
1358295	Aocep1	Aortic cell protein QTL 1	6.1	7e-07	thoracic aorta cellular protein amount (VT:0010598)	aortic cell percentage	17	40990005	85990005	Rat
1354640	Scl32	Serum cholesterol level QTL 32	5.4		blood HDL cholesterol amount (VT:0000184)	blood high density lipoprotein cholesterol level (CMO:0000052)	17	15781592	60781592	Rat
152023626	Bp403	Blood pressure QTL 403	3.86		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	37479847	82479847	Rat
9590107	Sffal7	Serum free fatty acids level QTL 7	4.81	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	17	28409147	73409147	Rat
2302377	Scl61	Serum cholesterol level QTL 61	4.36		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	17	27389946	53481766	Rat
70157	Niddm32	Non-insulin dependent diabetes mellitus QTL 32	4.34		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	22454924	50909196	Rat
724549	Niddm56	Non-insulin dependent diabetes mellitus QTL 56		0.03	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	31990784	76990784	Rat
1354651	Lmblg2	Limb length QTL 2	6		tibia length (VT:0004357)	tibia length (CMO:0000450)	17	4299130	69599340	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40540041	80387013	Rat
1354628	Stl13	Serum triglyceride level QTL 13	3.8		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	21293039	60781592	Rat
1581512	Cm55	Cardiac mass QTL 55	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	27027949	56836890	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4528038	49528038	Rat
1354630	Cm34	Cardiac mass QTL 34	8.7		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	4299130	69599340	Rat
61394	Bp8	Blood pressure QTL 8	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	23080567	59555013	Rat
1559055	Bp278	Blood pressure QTL 278		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	68653184	Rat
10450503	Bp386	Blood pressure QTL 386		0.28	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	31368391	62109574	Rat
152025238	Slep14	Serum leptin concentration QTL 14	4.62		blood leptin amount (VT:0005667)		17	24184890	79524188	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	4299130	69599340	Rat
2313854	Bp343	Blood pressure QTL 343	3.9		life span trait (VT:0005372)	age at time of death (CMO:0001193)	17	31990784	50909196	Rat
2317054	Aia12	Adjuvant induced arthritis QTL 12	4.24		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	38281509	83281509	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	42073160	69599340	Rat
1331765	Hrtrt15	Heart rate QTL 15	4.094		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	17	15330613	55836425	Rat
8552928	Pigfal9	Plasma insulin-like growth factor 1 level QTL 9	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	28409147	73409147	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	17	34550843	73951021	Rat
2317060	Aia26	Adjuvant induced arthritis QTL 26	3.22		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	38281509	83281509	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4528038	49528038	Rat
12903980	Cm120	Cardiac mass QTL 120		0.002	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	17	23653184	68653184	Rat
12903981	Am17	Aortic mass QTL 17		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	17	23653184	68653184	Rat
4889955	Bss93	Bone structure and strength QTL 93	4.4		tibia size trait (VT:0100001)	tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)	17	27027949	60463643	Rat
2303561	Bw91	Body weight QTL 91	2		body mass (VT:0001259)	body weight (CMO:0000012)	17	8868462	53868462	Rat
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23653184	70974005	Rat
12903978	Cm118	Cardiac mass QTL 118		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	23653184	68653184	Rat
2324621	Coatc5	Coat color QTL 5			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	17	31368391	73951021	Rat
12903979	Cm119	Cardiac mass QTL 119		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	23653184	68653184	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	24599340	69599340	Rat
1354596	Bw32	Body weight QTL 32	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	17	4299130	60781592	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	69599340	Rat
152023740	Bp406	Blood pressure QTL 406	6.06		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	31990784	81292925	Rat
7488966	Bp370	Blood pressure QTL 370		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	57246843	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	60781592	Rat
152023737	Bp405	Blood pressure QTL 405	5.06		arterial blood pressure trait (VT:2000000)			23930421	79524188	Rat
1354659	Scl68	Serum cholesterol level QTL 68	3.9		blood VLDL cholesterol amount (VT:0005144)	blood very low density lipoprotein cholesterol level (CMO:0000648)	17	15781592	60781592	Rat
152023736	Bp404	Blood pressure QTL 404	3.78		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat
724528	Uae4	Urinary albumin excretion QTL 4	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	17	35837085	69599340	Rat

RH128894

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	30,577,761 - 30,577,960 (+)	MAPPER	mRatBN7.2
mRatBN7.2	17	43,538,399 - 43,538,598 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	45,613,981 - 45,614,179	NCBI	Rnor6.0
Rnor_6.0	10	31,235,230 - 31,235,428	NCBI	Rnor6.0
Rnor_5.0	17	57,856,187 - 57,856,385	UniSTS	Rnor5.0
Rnor_5.0	10	31,054,441 - 31,054,639	UniSTS	Rnor5.0
RGSC_v3.4	10	31,277,421 - 31,277,619	UniSTS	RGSC3.4
RGSC_v3.4	17	51,192,709 - 51,192,907	UniSTS	RGSC3.4
Celera	17	52,940,820 - 52,941,018	UniSTS
Celera	10	30,030,798 - 30,030,996	UniSTS
Cytogenetic Map	10	q21	UniSTS
Cytogenetic Map	17	q11	UniSTS

TRIM27

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	43,547,074 - 43,547,176 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	45,622,654 - 45,622,755	NCBI	Rnor6.0
Rnor_5.0	17	57,847,612 - 57,847,713	UniSTS	Rnor5.0
RGSC_v3.4	17	51,201,382 - 51,201,483	UniSTS	RGSC3.4
Celera	17	52,932,244 - 52,932,345	UniSTS
Cytogenetic Map	17	q11	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001134974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005495255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC115670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC169072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000077363 ⟹ ENSRNOP00000074750

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	43,538,293 - 43,550,643 (-)	Ensembl
Rnor_6.0 Ensembl	17	45,613,864 - 45,626,212 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097731 ⟹ ENSRNOP00000088109

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	43,538,285 - 43,550,342 (-)	Ensembl

RefSeq Acc Id:

NM_001134974 ⟹ NP_001128446

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	48,233,999 - 48,246,348 (-)	NCBI
mRatBN7.2	17	43,538,282 - 43,550,633 (-)	NCBI
Rnor_6.0	17	45,613,863 - 45,626,212 (-)	NCBI
Rnor_5.0	17	57,844,089 - 57,856,503 (+)	NCBI
RGSC_v3.4	17	51,192,286 - 51,204,942 (-)	RGD
Celera	17	52,928,787 - 52,941,136 (+)	NCBI

Sequence:

show sequence

GGGATCCCTTCCGACGCGGCCACGTTGCCCGGTGAGCCATCCTGCAGCGCCGGGTTCCCGACACCCCTCTGCTCGGCTCTCAGCCGGGCCCTGGGGCCCAGGCCTTCCCGCGCTGTCCGTGAGGTGCA
GCTGTGCGGGGACGGGTCTGGCCGCCCCAGAGCTCCGCACGCGTCTAGGATCCCCGCGCCGGAGGCCCCACCCCGCTCCGGATCTGAGAAGCCGAGAGAGAGCGCCGGGCTCTGCCAGAGCTCGGCTC
CGGGCTCATGCCCTGCGGCCCAGCCGGCTCGCGCCATGGCCTCAGGGAGCGTGGCCGAGTCCCTGCAGCAGGAGACCACCTGCCCCGTGTGTCTTCAATACTTTGTGGAACCCATGATGCTCGACTGC
GGCCACAACATCTGTTGCGCGTGCCTGGCCCGCTGCTGGGGTGCCGCGGAGACTAACGTGTCGTGCCCGCAGTGCCGGGAGACCTTCCCGCAGCGCCACATGCGGCCCAACCGGCACCTGGCCAACGT
GACCCAGCTGGTGAAGCAACTGCGCACCGAGCGGCCGTCGGGGCCGGACGGCGAGATGGGCGTGTGCGAGAAGCACCGCGAGCCTCTGAAGCTGTACTGCGAGCAGGACCAGATGCCCATCTGCGTGG
TGTGCGACCGCTCGCGCGAGCACCGTGGCCACAGCGTGCTGCCGCTGGAGGAGGCTGTGGAAGGCTTCAAGGAGCAAATCCAGAATCGGCTGGACCACCTAAGAAGAGTGAAAGACTTGAAGAAGAGA
CGGAGGGCACAGGGGGAGCAGGCACGAGCTGAGCTCCTGAGCCTGACCCAGATGGAGAGGGAAAAAATTGTTTGGGAGTTTGAGCAGCTGTATCACTCTTTGAAGGAACATGAGTATCGCCTGTTGGC
TCGCCTTGAGGAGCTAGACTTGGCCATCTATAATAGCATCAACGGTGCCATCACTCAGTTCTCCTGCAACATCTCCCACCTCAGTGGCCTGATTGCCCAACTGGAAGAGAAGCAGCAGCAGCCCACGA
GGGAGCTCTTGCAGGACATTGGAGACACTCTGAGCAGGGCTGAAAGAATCAGGATCCCTGAGCCCTGGATCACACCTCCAGATCTACAAGAGAAAATCCATATTTTTGCCCAAAAATGTCTGTTTTTG
ACAGAAAGTCTAAAACAGTTCACAGAAAAAATGCAGTCAGATATGGAGAAGATCCAAGAGTTGAGAGAGGCTCAATTATACTCAGTTGACGTGACCCTGGACCCAGACACAGCCTATCCCAGCCTGAT
TCTTTCAGATAATCTTCGGCAAGTACGGTACAGTTACCTCCAGCAGGATCTTCCAGACAACCCTGAGCGGTTCAATCTGTTTCCCTGTGTCTTGGGCTCTCCATGTTTCATCGCTGGGAGACATTACT
GGGAGGTAGAGGTGGGCGATAAAGCCAAGTGGACCATAGGTGTCTGTGAAGACTCAGTGTGCAGAAAAGGTGGGGTGACCTCAGCCCCCCAGAATGGATTCTGGGCAGTGTCATTGTGGTATGGGAAA
GAATATTGGGCTCTTACATCCCCGATGACTGCACTCCCCCTGCGGACCCCTCTCCAGAGGGTAGGGATTTTCTTGGACTATGATGCTGGTGAGGTTTCCTTCTACAATGTGACAGAGAGATGCCATAC
CTTTACTTTCTCTCATGCTACCTTCTGTGGGCCAGTCCGGCCCTACTTCAGCCTAAGTTACTCGGGAGGGAAGAGTGCGGCTCCTTTGATCATCTGCCCTATGAGTGGGATTGATGGGTTTTCTGGCC
ATGTTGGGAATCATGGTCATTCCATGGAGACCTCTCCTTGAGGAAGTGAACTTAGACCACAAGTGCTGTTGCCTGTAGTCCTACCCCAGGCACAAGGGATCTTGTTGTCTTGTTGATTCCTGTCTATC
CAGCGGGGTGTCCTCACCTTCCATGCCCTACAGTGAGAGACAAGATGTCCATCCACGATCTCTACTCACTTTCCCTTCCCTTGCAGATTGTGAGATGTAACAAAAAGTATTGCTATTTCCCAGAAATA
AAAACCAGATTTCTCCTCTTGTGTTTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039095517 ⟹ XP_038951445

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	48,234,001 - 48,245,105 (-)	NCBI
mRatBN7.2	17	43,538,318 - 43,549,916 (-)	NCBI

RefSeq Acc Id:

XM_039095518 ⟹ XP_038951446

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	48,234,001 - 48,244,900 (-)	NCBI
mRatBN7.2	17	43,538,318 - 43,549,916 (-)	NCBI

RefSeq Acc Id:

XR_005495255

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	48,234,727 - 48,246,057 (-)	NCBI
mRatBN7.2	17	43,539,007 - 43,550,630 (-)	NCBI


Protein RefSeqs	NP_001128446	(Get FASTA)	NCBI Sequence Viewer
	XP_038951445	(Get FASTA)	NCBI Sequence Viewer
	XP_038951446	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI69072	(Get FASTA)	NCBI Sequence Viewer
	EDL84533	(Get FASTA)	NCBI Sequence Viewer
	EDL84534	(Get FASTA)	NCBI Sequence Viewer
	EDL84535	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000074750
	ENSRNOP00000074750.1
	ENSRNOP00000088109.1

RefSeq Acc Id:

NP_001128446 ⟸ NM_001134974

- UniProtKB:

B5DFI5 (UniProtKB/TrEMBL), A0A0G2K8V4 (UniProtKB/TrEMBL), A0A8I6A5I2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASGSVAESLQQETTCPVCLQYFVEPMMLDCGHNICCACLARCWGAAETNVSCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPDGEMGVCEKHREPLKLYCEQDQMPICVVCDRSREHRGHS
VLPLEEAVEGFKEQIQNRLDHLRRVKDLKKRRRAQGEQARAELLSLTQMEREKIVWEFEQLYHSLKEHEYRLLARLEELDLAIYNSINGAITQFSCNISHLSGLIAQLEEKQQQPTRELLQDIGDTLS
RAERIRIPEPWITPPDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQELREAQLYSVDVTLDPDTAYPSLILSDNLRQVRYSYLQQDLPDNPERFNLFPCVLGSPCFIAGRHYWEVEVGDKAKWT
IGVCEDSVCRKGGVTSAPQNGFWAVSLWYGKEYWALTSPMTALPLRTPLQRVGIFLDYDAGEVSFYNVTERCHTFTFSHATFCGPVRPYFSLSYSGGKSAAPLIICPMSGIDGFSGHVGNHGHSMETS
P

hide sequence

Ensembl Acc Id:

ENSRNOP00000074750 ⟸ ENSRNOT00000077363

RefSeq Acc Id:	XP_038951445 ⟸ XM_039095517
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038951446 ⟸ XM_039095518
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000088109 ⟸ ENSRNOT00000097731

Protein Domains

B box-type B30.2/SPRY RING-type

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B5DFI5-F1-model_v2	AlphaFold	B5DFI5	1-513	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13700497

Promoter ID:

EPDNEW_R11021

Type:

initiation region

Name:

Trim27_1

Description:

tripartite motif-containing 27

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	45,626,202 - 45,626,262	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-9187	BioCyc
Ensembl Genes	ENSRNOG00000055917	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000077363	ENTREZGENE
	ENSRNOT00000077363.2	UniProtKB/TrEMBL
	ENSRNOT00000097731.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.920	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	B30.2/SPRY	UniProtKB/TrEMBL
	B30.2/SPRY_sf	UniProtKB/TrEMBL
	Butyrophylin	UniProtKB/TrEMBL
	ConA-like_dom	UniProtKB/TrEMBL
	PRY	UniProtKB/TrEMBL
	SPRY/PRY_TRIM27	UniProtKB/TrEMBL
	SPRY_rcpt	UniProtKB/TrEMBL
	TRIM/RBCC	UniProtKB/TrEMBL
	Znf_B-box	UniProtKB/TrEMBL
	Znf_B-box_chordata	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_RING_CS	UniProtKB/TrEMBL
KEGG Report	rno:291171	UniProtKB/TrEMBL
NCBI Gene	291171	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE TRIM	UniProtKB/TrEMBL
Pfam	PRY	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
	zf-B_box	UniProtKB/TrEMBL
	zf-C3HC4_4	UniProtKB/TrEMBL
PhenoGen	Trim27	PhenoGen
PRINTS	BBOXZNFINGER	UniProtKB/TrEMBL
	BUTYPHLNCDUF	UniProtKB/TrEMBL
PROSITE	B302_SPRY	UniProtKB/TrEMBL
	ZF_BBOX	UniProtKB/TrEMBL
	ZF_RING_1	UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000055917	RatGTEx
SMART	BBOX	UniProtKB/TrEMBL
	PRY	UniProtKB/TrEMBL
	RING	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
Superfamily-SCOP	B-box zinc-binding domain	UniProtKB/TrEMBL
	ConA_like_lec_gl	UniProtKB/TrEMBL
	RING/U-box	UniProtKB/TrEMBL
UniProt	A0A0G2K8V4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A5I2	ENTREZGENE, UniProtKB/TrEMBL
	B5DFI5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-31	Trim27	tripartite motif-containing 27	Trim27_predicted	tripartite motif protein 27 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2007-04-24	Trim27_predicted	tripartite motif protein 27 (predicted)	Rfp1_mapped	ret finger protein 1 (mapped)	Data merged from RGD:3558	737654	APPROVED
2005-11-17	Rfp1_mapped	ret finger protein 1 (mapped)	Rfp1	ret finger protein 1	Symbol and Name updated	1556543	APPROVED
2005-01-12	Trim27_predicted	tripartite motif protein 27 (predicted)			Symbol and Name status set to approved	70820	APPROVED
2002-06-10	Rfp1	Ret finger protein 1			Symbol and Name status set to approved	70586	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar