Chd2 (chromodomain helicase DNA binding protein 2) - Rat Genome Database

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Gene: Chd2 (chromodomain helicase DNA binding protein 2) Rattus norvegicus
Analyze
Symbol: Chd2
Name: chromodomain helicase DNA binding protein 2
RGD ID: 1310056
Description: Predicted to enable several functions, including ATP hydrolysis activity; ATP-dependent chromatin remodeler activity; and histone binding activity. Predicted to be involved in gene expression; muscle organ development; and nucleosome organization. Predicted to act upstream of or within DNA damage response and hematopoietic stem cell differentiation. Predicted to be active in chromatin and nucleus. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 94. Orthologous to human CHD2 (chromodomain helicase DNA binding protein 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4-amino-2,6-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: chromodomain-helicase-DNA-binding protein 2; LOC108349594; LOC308738; uncharacterized LOC108349594
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81136,597,993 - 136,726,874 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1136,599,900 - 136,710,335 (-)EnsemblGRCr8
mRatBN7.21127,188,146 - 127,317,041 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1127,190,059 - 127,300,502 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1135,179,350 - 135,289,183 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01142,349,455 - 142,459,293 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01135,177,391 - 135,286,853 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01134,757,934 - 134,873,053 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1134,757,934 - 134,871,167 (-)Ensemblrn6Rnor6.0
Rnor_5.01135,782,462 - 135,897,354 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41128,609,727 - 128,720,325 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1119,322,047 - 119,431,932 (-)NCBICelera
RGSC_v3.11128,688,083 - 128,798,804 (-)NCBI
Cytogenetic Map1q31NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-citrinin  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
6-propyl-2-thiouracil  (EXP)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
carmustine  (ISO)
chrysene  (ISO)
clobetasol  (ISO)
clotrimazole  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
decabromodiphenyl ether  (EXP)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
dibenzo[a,l]pyrene  (ISO)
Dibutyl phosphate  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
Enterolactone  (ISO)
erythromycin estolate  (EXP)
fenthion  (ISO)
fluoranthene  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
glucose  (ISO)
hydralazine  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
lead diacetate  (EXP)
leflunomide  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylphenidate  (ISO)
nicotine  (ISO)
nitrates  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
quercitrin  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (EXP,ISO)
sulfadimethoxine  (EXP)
temozolomide  (ISO)
tetrachloromethane  (EXP)
tetraphene  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IBA)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19137022   PMID:22569126   PMID:22658674   PMID:22681889   PMID:23376485  


Genomics

Comparative Map Data
Chd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81136,597,993 - 136,726,874 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1136,599,900 - 136,710,335 (-)EnsemblGRCr8
mRatBN7.21127,188,146 - 127,317,041 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1127,190,059 - 127,300,502 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1135,179,350 - 135,289,183 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01142,349,455 - 142,459,293 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01135,177,391 - 135,286,853 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01134,757,934 - 134,873,053 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1134,757,934 - 134,871,167 (-)Ensemblrn6Rnor6.0
Rnor_5.01135,782,462 - 135,897,354 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41128,609,727 - 128,720,325 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1119,322,047 - 119,431,932 (-)NCBICelera
RGSC_v3.11128,688,083 - 128,798,804 (-)NCBI
Cytogenetic Map1q31NCBI
CHD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381592,900,324 - 93,027,996 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1592,886,203 - 93,027,996 (+)Ensemblhg38GRCh38
GRCh371593,443,554 - 93,571,226 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361591,244,555 - 91,372,241 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341591,244,422 - 91,366,396NCBI
Celera1569,855,404 - 69,982,772 (+)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1569,580,061 - 69,707,674 (+)NCBIHuRef
CHM1_11593,284,562 - 93,411,895 (+)NCBICHM1_1
T2T-CHM13v2.01590,662,587 - 90,790,268 (+)NCBIT2T-CHM13v2.0
Chd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39773,076,400 - 73,191,494 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl773,076,386 - 73,191,578 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38773,426,652 - 73,541,746 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl773,426,638 - 73,541,830 (-)Ensemblmm10GRCm38
MGSCv37780,571,538 - 80,686,632 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36773,303,121 - 73,415,343 (-)NCBIMGSCv36mm8
Celera770,874,423 - 70,989,778 (-)NCBICelera
Cytogenetic Map7D1NCBI
cM Map741.85NCBI
Chd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541621,085,570 - 21,210,321 (+)Ensembl
ChiLan1.0NW_00495541621,085,570 - 21,210,321 (+)NCBIChiLan1.0ChiLan1.0
CHD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21682,430,058 - 82,574,809 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11586,128,120 - 86,272,854 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01571,568,560 - 71,713,330 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11590,780,220 - 90,906,863 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1590,781,169 - 90,903,569 (+)EnsemblpanPan2panpan1.1
CHD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1347,101,789 - 47,221,473 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl347,105,046 - 47,221,385 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha349,802,181 - 49,921,599 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0347,511,193 - 47,631,121 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl347,511,205 - 47,631,054 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1347,029,130 - 47,148,452 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0347,260,475 - 47,380,113 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0347,591,992 - 47,711,357 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Chd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640136,403,356 - 136,530,590 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364839,803,623 - 9,931,272 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364839,803,887 - 9,931,132 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl785,983,837 - 86,106,938 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1785,980,759 - 86,107,886 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2791,874,318 - 92,002,341 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12911,436,170 - 11,579,468 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2911,450,799 - 11,579,594 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605935,081,933 - 35,228,711 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476810,785,815 - 10,922,790 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476810,786,139 - 10,922,558 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Chd2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12126,955,367 - 127,067,636 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Chd2
918 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:56
Count of miRNA genes:51
Interacting mature miRNAs:55
Transcripts:ENSRNOT00000055829
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1131179947176179947Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1101228864146228864Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1130419227175419227Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1132760429191848948Rat
631684Bp117Blood pressure QTL 1178.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1120082258165082258Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1112521556157521556Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1598850Bp297Blood pressure QTL 2972.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1130419227175419227Rat
631570Bp94Blood pressure QTL 940.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1132889797152403053Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1132966869252856240Rat
152025232Bw192Body weight QTL 1923.93body mass (VT:0001259)1127329268206393015Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1132760602142582180Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)199645382182701046Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)199645382221502378Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1109493780193400781Rat
2317833Alcrsp19Alcohol response QTL 1912.40.001response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1110389869155389869Rat
1300153Bp171Blood pressure QTL 1713.37arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1124975316152612788Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1103779152223964440Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)198879955208479939Rat
1641897Alcrsp1Alcohol response QTL 1response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1110389869155389869Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)197582336142582336Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1116099376191260518Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1101594089146594089Rat
2293140Bp313Blood pressure QTL 313arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1131243790176243790Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)196717367160111531Rat
61370Mcs3Mammary carcinoma susceptibility QTL 32.15mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1111404407142582336Rat
737974Bp161Blood pressure QTL 1610.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1129182274174182274Rat
1641895Bp298Blood pressure QTL 298arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1132760429191848948Rat
631496Bp97Blood pressure QTL 973.08arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1115183611176289080Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1102780511182384005Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1111949780210707719Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1128019551173019551Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
61399Tcat1Tongue tumor resistance QTL 13.3tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 5 mm (CMO:0001879)1108680016153680016Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)1102359314153680016Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1111949780210707719Rat
634348Bp138Blood pressure QTL 138arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1135021436178317588Rat
8694370Bw154Body weight QTL 1548.910.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)1112521556157521556Rat
1354623Rf46Renal function QTL 463.8blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)1111949780160574007Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
631654Bp107Blood pressure QTL 107arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1135021436180021436Rat
631544Bp84Blood pressure QTL 845.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1132760429191190115Rat
152025212Bw190Body weight QTL 1905.7body mass (VT:0001259)1132966869206393015Rat
631549Bp89Blood pressure QTL 895.7arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1132760429152404087Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1100345976145345976Rat
1358189Cstrr1Cold stress response QTL 10.0001catecholamine amount (VT:0010543)urine norepinephrine level (CMO:0001629)1132760429191848948Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1111949780228180370Rat
2325726Eae30Experimental allergic encephalomyelitis QTL 30nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1132463342138003629Rat

Markers in Region
RH143573  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21127,301,816 - 127,301,962 (+)MAPPERmRatBN7.2
Rnor_6.01134,872,486 - 134,872,631NCBIRnor6.0
Rnor_5.01135,896,784 - 135,896,929UniSTSRnor5.0
RGSC_v3.41128,721,643 - 128,721,788UniSTSRGSC3.4
Celera1119,433,250 - 119,433,395UniSTS
RH 3.4 Map1994.1UniSTS
Cytogenetic Map1q31UniSTS
AW535385  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21127,205,413 - 127,205,607 (+)MAPPERmRatBN7.2
Rnor_6.01134,775,197 - 134,775,390NCBIRnor6.0
Rnor_5.01135,799,725 - 135,799,918UniSTSRnor5.0
RGSC_v3.41128,624,096 - 128,624,289UniSTSRGSC3.4
Celera1119,336,416 - 119,336,609UniSTS
RH 3.4 Map1984.0UniSTS
Cytogenetic Map1q31UniSTS
RH141602  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21127,298,650 - 127,298,841 (+)MAPPERmRatBN7.2
Rnor_6.01134,869,319 - 134,869,509NCBIRnor6.0
Rnor_5.01135,893,617 - 135,893,807UniSTSRnor5.0
RGSC_v3.41128,718,476 - 128,718,666UniSTSRGSC3.4
Celera1119,430,083 - 119,430,273UniSTS
RH 3.4 Map1974.5UniSTS
Cytogenetic Map1q31UniSTS
MARC_17499-17500:1016469992:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21127,242,417 - 127,243,007 (+)MAPPERmRatBN7.2
Rnor_6.01134,813,025 - 134,813,614NCBIRnor6.0
Rnor_5.01135,837,553 - 135,838,142UniSTSRnor5.0
RGSC_v3.41128,661,098 - 128,661,687UniSTSRGSC3.4
Celera1119,373,414 - 119,374,003UniSTS
Cytogenetic Map1q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008759519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008759520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000055829   ⟹   ENSRNOP00000052684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1136,599,900 - 136,706,173 (-)Ensembl
mRatBN7.2 Ensembl1127,190,299 - 127,296,642 (-)Ensembl
Rnor_6.0 Ensembl1134,760,842 - 134,870,255 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1134,883,619 - 134,885,774 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1134,873,400 - 134,887,841 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076300   ⟹   ENSRNOP00000068303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1136,599,900 - 136,710,335 (-)Ensembl
mRatBN7.2 Ensembl1127,190,059 - 127,300,502 (-)Ensembl
Rnor_6.0 Ensembl1134,757,934 - 134,871,167 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1134,873,408 - 134,887,403 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1134,873,469 - 134,885,613 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000090149   ⟹   ENSRNOP00000075309
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1136,599,900 - 136,706,173 (-)Ensembl
mRatBN7.2 Ensembl1127,190,299 - 127,296,642 (-)Ensembl
Rnor_6.0 Ensembl1134,760,084 - 134,867,001 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098073   ⟹   ENSRNOP00000085288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1136,599,900 - 136,710,335 (-)Ensembl
mRatBN7.2 Ensembl1127,190,059 - 127,300,502 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000131527   ⟹   ENSRNOP00000109795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1136,599,947 - 136,710,335 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000157492   ⟹   ENSRNOP00000110047
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1136,608,378 - 136,706,244 (-)Ensembl
RefSeq Acc Id: NM_001107523   ⟹   NP_001100993
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81136,600,887 - 136,710,335 (-)NCBI
mRatBN7.21127,191,045 - 127,300,500 (-)NCBI
Rnor_6.01134,760,828 - 134,871,168 (-)NCBI
Rnor_5.01135,782,462 - 135,897,354 (-)NCBI
RGSC_v3.41128,609,727 - 128,720,325 (-)RGD
Celera1119,322,047 - 119,431,932 (-)RGD
Sequence:
RefSeq Acc Id: XM_039112837   ⟹   XP_038968765
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81136,597,993 - 136,726,874 (-)NCBI
mRatBN7.21127,191,045 - 127,317,041 (-)NCBI
RefSeq Acc Id: XM_039112868   ⟹   XP_038968796
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81136,597,993 - 136,726,874 (-)NCBI
mRatBN7.21127,191,045 - 127,317,041 (-)NCBI
RefSeq Acc Id: XM_039112875   ⟹   XP_038968803
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81136,597,993 - 136,661,486 (-)NCBI
mRatBN7.21127,188,146 - 127,251,648 (-)NCBI
RefSeq Acc Id: XM_063262604   ⟹   XP_063118674
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81136,597,993 - 136,726,874 (-)NCBI
RefSeq Acc Id: XM_063262608   ⟹   XP_063118678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81136,597,993 - 136,726,619 (-)NCBI
RefSeq Acc Id: XM_063262609   ⟹   XP_063118679
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81136,597,993 - 136,725,614 (-)NCBI
RefSeq Acc Id: XM_063262621   ⟹   XP_063118691
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81136,597,993 - 136,726,874 (-)NCBI
RefSeq Acc Id: XM_063262625   ⟹   XP_063118695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81136,597,993 - 136,726,874 (-)NCBI
RefSeq Acc Id: XM_063262626   ⟹   XP_063118696
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81136,597,993 - 136,726,874 (-)NCBI
RefSeq Acc Id: XM_063262627   ⟹   XP_063118697
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81136,597,993 - 136,726,874 (-)NCBI
RefSeq Acc Id: XM_063262629   ⟹   XP_063118699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81136,606,311 - 136,726,874 (-)NCBI
RefSeq Acc Id: XM_063262631   ⟹   XP_063118701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81136,667,155 - 136,726,874 (-)NCBI
RefSeq Acc Id: XR_010052226
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81136,625,182 - 136,726,874 (-)NCBI
RefSeq Acc Id: XR_010052231
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81136,640,913 - 136,726,874 (-)NCBI
RefSeq Acc Id: XR_010052232
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81136,646,034 - 136,726,874 (-)NCBI
RefSeq Acc Id: NP_001100993   ⟸   NM_001107523
- UniProtKB: A0A096MJY0 (UniProtKB/TrEMBL),   A6JBX9 (UniProtKB/TrEMBL),   D4AD08 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000052684   ⟸   ENSRNOT00000055829
Ensembl Acc Id: ENSRNOP00000075309   ⟸   ENSRNOT00000090149
Ensembl Acc Id: ENSRNOP00000068303   ⟸   ENSRNOT00000076300
RefSeq Acc Id: XP_038968803   ⟸   XM_039112875
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038968796   ⟸   XM_039112868
- Peptide Label: isoform X6
- UniProtKB: D4AD08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968765   ⟸   XM_039112837
- Peptide Label: isoform X2
- UniProtKB: D4AD08 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000085288   ⟸   ENSRNOT00000098073
RefSeq Acc Id: XP_063118696   ⟸   XM_063262626
- Peptide Label: isoform X4
- UniProtKB: A0A8I6GCU8 (UniProtKB/TrEMBL),   D4AD08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118695   ⟸   XM_063262625
- Peptide Label: isoform X3
- UniProtKB: D4AD08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118697   ⟸   XM_063262627
- Peptide Label: isoform X5
- UniProtKB: D4AD08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118674   ⟸   XM_063262604
- Peptide Label: isoform X1
- UniProtKB: A0A0G2KA92 (UniProtKB/TrEMBL),   D4AD08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118691   ⟸   XM_063262621
- Peptide Label: isoform X2
- UniProtKB: D4AD08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118678   ⟸   XM_063262608
- Peptide Label: isoform X1
- UniProtKB: A0A0G2KA92 (UniProtKB/TrEMBL),   D4AD08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118679   ⟸   XM_063262609
- Peptide Label: isoform X1
- UniProtKB: A0A0G2KA92 (UniProtKB/TrEMBL),   D4AD08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118699   ⟸   XM_063262629
- Peptide Label: isoform X7
- UniProtKB: D4AD08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118701   ⟸   XM_063262631
- Peptide Label: isoform X9
Ensembl Acc Id: ENSRNOP00000110047   ⟸   ENSRNOT00000157492
Ensembl Acc Id: ENSRNOP00000109795   ⟸   ENSRNOT00000131527
Protein Domains
Chromo   Helicase ATP-binding   Helicase C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2KA92-F1-model_v2 AlphaFold A0A0G2KA92 1-1840 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690116
Promoter ID:EPDNEW_R639
Type:multiple initiation site
Name:Chd2_2
Description:chromodomain helicase DNA binding protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R640  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01134,867,098 - 134,867,158EPDNEW
RGD ID:13690117
Promoter ID:EPDNEW_R640
Type:multiple initiation site
Name:Chd2_1
Description:chromodomain helicase DNA binding protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R639  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01134,871,167 - 134,871,227EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310056 AgrOrtholog
BioCyc Gene G2FUF-58893 BioCyc
Ensembl Genes ENSRNOG00000012716 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000051039 Ensembl
Ensembl Transcript ENSRNOT00000055829.5 UniProtKB/TrEMBL
  ENSRNOT00000076300 ENTREZGENE
  ENSRNOT00000076300.4 UniProtKB/TrEMBL
  ENSRNOT00000090149 ENTREZGENE
  ENSRNOT00000090149.3 UniProtKB/TrEMBL
  ENSRNOT00000098073 ENTREZGENE
  ENSRNOT00000098073.2 UniProtKB/TrEMBL
  ENSRNOT00000131527.1 UniProtKB/TrEMBL
  ENSRNOT00000157492 ENTREZGENE
  ENSRNOT00000157492.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/TrEMBL
  3.40.50.10810 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  6.10.140.1440 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro CDH1_2_SANT_HL1 UniProtKB/TrEMBL
  Chromo_domain UniProtKB/TrEMBL
  Chromo_domain/shadow UniProtKB/TrEMBL
  Chromodomain-like UniProtKB/TrEMBL
  Chromodomain_CS UniProtKB/TrEMBL
  DUF4208 UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  Hrp3-like_HTH UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/TrEMBL
  SNF2/RAD54-like_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
KEGG Report rno:308738 UniProtKB/TrEMBL
NCBI Gene 308738 ENTREZGENE
PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 2 UniProtKB/TrEMBL
  CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED UniProtKB/TrEMBL
Pfam CDH1_2_SANT_HL1 UniProtKB/TrEMBL
  Chromo UniProtKB/TrEMBL
  DUF4208 UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  Hrp3 UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
PhenoGen Chd2 PhenoGen
PROSITE CHROMO_1 UniProtKB/TrEMBL
  CHROMO_2 UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012716 RatGTEx
  ENSRNOG00000051039 RatGTEx
SMART CHROMO UniProtKB/TrEMBL
  DEXDc UniProtKB/TrEMBL
  DUF4208 UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP Chromodomain-like UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A096MJY0 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2KA92 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GCU8 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LUZ9_RAT UniProtKB/TrEMBL
  A0ABK0M4Y4_RAT UniProtKB/TrEMBL
  A6JBX9 ENTREZGENE, UniProtKB/TrEMBL
  D4AD08 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Chd2  chromodomain helicase DNA binding protein 2  LOC108349594  uncharacterized LOC108349594  Data merged from RGD:11468822 737654 PROVISIONAL
2016-08-02 LOC108349594  uncharacterized LOC108349594      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Chd2  chromodomain helicase DNA binding protein 2   Chd2_predicted  chromodomain helicase DNA binding protein 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Chd2_predicted  chromodomain helicase DNA binding protein 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED