Advanced Search (OLGA)

Gene: Arhgap12 (Rho GTPase activating protein 12) Rattus norvegicus

Analyze

Symbol:

Arhgap12

Name:

Rho GTPase activating protein 12

RGD ID:

1310017

Description:

Predicted to enable GTPase activator activity. Involved in regulation of postsynapse assembly. Is active in glutamatergic synapse and postsynapse. Orthologous to human ARHGAP12 (Rho GTPase activating protein 12); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC307016; rho GTPase-activating protein 12

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ARHGAP12 (Rho GTPase activating protein 12)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Arhgap12 (Rho GTPase activating protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Arhgap12 (Rho GTPase activating protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ARHGAP12 (Rho GTPase activating protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ARHGAP12 (Rho GTPase activating protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Arhgap12 (Rho GTPase activating protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ARHGAP12 (Rho GTPase activating protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ARHGAP12 (Rho GTPase activating protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Arhgap12 (Rho GTPase activating protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Arhgap12 (Rho GTPase activating protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ARHGAP12 (Rho GTPase activating protein 12)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Arhgap12 (Rho GTPase activating protein 12)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Arhgap12 (Rho GTPase activating protein 12)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arhgap12b (Rho GTPase activating protein 12b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arhgap12b (Rho GTPase activating protein 12b)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arhgap12a (Rho GTPase activating protein 12a)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	arhgap12a (Rho GTPase activating protein 12a)	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	RGA1	Alliance	DIOPT (Hieranoid\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RGA1	Alliance	DIOPT (PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RGA2	Alliance	DIOPT (Hieranoid\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RGA2	Alliance	DIOPT (PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tag-325	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tag-325	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RGD1	Alliance	DIOPT (PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	BEM2	Alliance	DIOPT (OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	RhoGAP16F	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	arhgap12	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	arhgap12	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	56,284,282 - 56,397,630 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	56,284,286 - 56,397,563 (+)	Ensembl				GRCr8
mRatBN7.2	17	51,588,810 - 51,702,417 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	51,588,842 - 51,702,080 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	54,762,309 - 54,875,839 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	58,765,245 - 58,878,772 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	52,903,659 - 53,017,340 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	54,280,815 - 54,394,716 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	54,280,851 - 54,394,634 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	51,975,184 - 52,089,094 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	59,797,507 - 59,910,741 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	47,599,059 - 47,712,148 (+)	NCBI		Celera
RGSC_v3.1	17	59,808,198 - 59,920,795 (+)	NCBI
Cytogenetic Map	17	q12.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cobalt dichloride (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

ethanol (ISO)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

genistein (ISO)

GSK-J4 (ISO)

isoprenaline (ISO)

ivermectin (ISO)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

melphalan (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

propiconazole (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament organization (IEA,ISO)

morphogenesis of an epithelial sheet (IEA,ISO)

negative regulation of small GTPase mediated signal transduction (IEA,ISO)

phagocytosis, engulfment (IEA,ISO)

regulation of postsynapse assembly (IDA,IMP)

signal transduction (IEA)

small GTPase-mediated signal transduction (IBA)

Cellular Component

cytoplasm (IBA)

glutamatergic synapse (IDA,IMP)

phagocytic cup (IEA,ISO)

plasma membrane (IBA)

postsynapse (IDA,IMP)

Molecular Function

GTPase activator activity (IBA,IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ARHGAP12 Functions as a Developmental Brake on Excitatory Synapse Function.	Ba W, etal., Cell Rep. 2016 Feb 16;14(6):1355-68. doi: 10.1016/j.celrep.2016.01.037. Epub 2016 Feb 4.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:23201090	PMID:26465210

Genomics

Comparative Map Data

Arhgap12
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	56,284,282 - 56,397,630 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	56,284,286 - 56,397,563 (+)	Ensembl				GRCr8
mRatBN7.2	17	51,588,810 - 51,702,417 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	51,588,842 - 51,702,080 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	54,762,309 - 54,875,839 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	58,765,245 - 58,878,772 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	52,903,659 - 53,017,340 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	54,280,815 - 54,394,716 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	54,280,851 - 54,394,634 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	51,975,184 - 52,089,094 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	59,797,507 - 59,910,741 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	47,599,059 - 47,712,148 (+)	NCBI		Celera
RGSC_v3.1	17	59,808,198 - 59,920,795 (+)	NCBI
Cytogenetic Map	17	q12.1	NCBI

ARHGAP12
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	31,805,398 - 31,928,876 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	31,805,398 - 31,928,876 (-)	Ensembl			hg38	GRCh38
GRCh37	10	32,094,326 - 32,217,804 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	32,135,231 - 32,257,776 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	10	32,135,230 - 32,257,776	NCBI
Celera	10	31,860,349 - 31,982,898 (-)	NCBI		Celera
Cytogenetic Map	10	p11.22	NCBI
HuRef	10	31,814,718 - 31,938,300 (-)	NCBI		HuRef
CHM1_1	10	32,094,260 - 32,217,738 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	31,836,817 - 31,960,265 (-)	NCBI		T2T-CHM13v2.0

Arhgap12
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	6,024,448 - 6,136,102 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	6,024,427 - 6,136,098 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	18	6,024,448 - 6,136,098 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	6,024,427 - 6,136,098 (-)	Ensembl			mm10	GRCm38
MGSCv37	18	6,024,446 - 6,136,096 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	18	6,025,215 - 6,135,887 (-)	NCBI		MGSCv36	mm8
Celera	18	6,070,257 - 6,182,214 (-)	NCBI		Celera
Cytogenetic Map	18	A1	NCBI
cM Map	18	4.46	NCBI

Arhgap12
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955429	23,450,268 - 23,560,948 (-)	Ensembl
ChiLan1.0	NW_004955429	23,452,880 - 23,560,948 (-)	NCBI	ChiLan1.0	ChiLan1.0

ARHGAP12
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	44,453,350 - 44,581,617 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	44,457,833 - 44,586,941 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	31,932,294 - 32,061,450 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	32,526,466 - 32,630,370 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	32,527,838 - 32,628,690 (-)	Ensembl			panPan2	panpan1.1

ARHGAP12
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	14,959,556 - 15,114,710 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	14,976,416 - 15,115,194 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	12,447,199 - 12,602,262 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	13,195,757 - 13,350,836 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	13,195,744 - 13,346,026 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	12,635,843 - 12,790,873 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	12,527,046 - 12,681,618 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	12,800,653 - 12,955,754 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Arhgap12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	10,908,185 - 11,015,502 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936574	407,639 - 506,950 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936574	407,639 - 514,268 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARHGAP12
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	42,454,646 - 42,577,345 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	10	42,458,115 - 42,577,351 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	47,054,190 - 47,173,277 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARHGAP12
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	31,124,281 - 31,249,546 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	31,123,727 - 31,249,524 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666056	40,095,774 - 40,220,663 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arhgap12
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624805	4,283,213 - 4,383,718 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624805	4,283,213 - 4,383,737 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Arhgap12
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	14	32,337,882 - 32,479,949 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Arhgap12
483 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	283
Count of miRNA genes:	191
Interacting mature miRNAs:	213
Transcripts:	ENSRNOT00000024022
Prediction methods:	Miranda, Pita, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631497	Bp98	Blood pressure QTL 98	3.66		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	49496932	65155015	Rat
70210	Cm15	Cardiac mass QTL 15	6.5		heart right ventricle mass (VT:0007033)	heart right ventricle wet weight (CMO:0000072)	17	30066472	75066472	Rat
8552966	Pigfal18	Plasma insulin-like growth factor 1 level QTL 18	8.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	12860942	57860942	Rat
152023626	Bp403	Blood pressure QTL 403	3.86		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	42388164	87388164	Rat
9590107	Sffal7	Serum free fatty acids level QTL 7	4.81	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	17	33104645	78104645	Rat
2302377	Scl61	Serum cholesterol level QTL 61	4.36		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	17	6221998	58177198	Rat
1354654	Spl7	Serum phospholipid level QTL 7	5.5		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	17	38031354	83031354	Rat
9589151	Insul30	Insulin level QTL 30	8.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	12860942	57860942	Rat
2317038	Ginf3	Gastrointestinal inflammation QTL 3	2.89	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	17	54829503	93515804	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40968017	89341781	Rat
1581512	Cm55	Cardiac mass QTL 55	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	27233445	83975845	Rat
1354629	Scl31	Serum cholesterol level QTL 31	4.1		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	17	38031354	83031354	Rat
61394	Bp8	Blood pressure QTL 8	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	23286322	64246472	Rat
9589057	Scfw6	Subcutaneous fat weight QTL 6	8.62	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	17	12860942	57860942	Rat
2317045	Aia11	Adjuvant induced arthritis QTL 11	4.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	26522051	71522051	Rat
1600398	Edcs5	Endometrial carcinoma susceptibility QTL 5	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	17	35446949	75762341	Rat
9590154	Scort9	Serum corticosterone level QTL 9	23.57	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	12860942	57860942	Rat
10450503	Bp386	Blood pressure QTL 386		0.28	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	22019705	67019705	Rat
1559055	Bp278	Blood pressure QTL 278		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23858926	68858926	Rat
152025238	Slep14	Serum leptin concentration QTL 14	4.62		blood leptin amount (VT:0005667)		17	24390595	84432719	Rat
9590088	Insglur7	Insulin/glucose ratio QTL 7	20.38	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	17	12860942	57860942	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	38031354	83031354	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	38031354	83031354	Rat
1331765	Hrtrt15	Heart rate QTL 15	4.094		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	17	15537025	60531414	Rat
8552928	Pigfal9	Plasma insulin-like growth factor 1 level QTL 9	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	33104645	78104645	Rat
7411666	Foco31	Food consumption QTL 31	11.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	17	12860942	57860942	Rat
12904736	Cm121	Cardiac mass QTL 121		0.043	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	42388164	87388164	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	17	46050126	91050126	Rat
12903980	Cm120	Cardiac mass QTL 120		0.002	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	17	23858926	68858926	Rat
12903981	Am17	Aortic mass QTL 17		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	17	23858926	68858926	Rat
4889955	Bss93	Bone structure and strength QTL 93	4.4		tibia size trait (VT:0100001)	tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)	17	27233445	65155015	Rat
4889891	Eae32	Experimental allergic encephalomyelitis QTL 32	4.8	0.0002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	27233445	72233445	Rat
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23858926	68858926	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	0.0001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	55604597	93006569	Rat
12903978	Cm118	Cardiac mass QTL 118		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	23858926	68858926	Rat
2324621	Coatc5	Coat color QTL 5			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	17	42654895	87654895	Rat
12903979	Cm119	Cardiac mass QTL 119		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	23858926	68858926	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	37687877	82687877	Rat
1300129	Rf25	Renal function QTL 25	3.03		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	17	41062352	86062352	Rat
152023740	Bp406	Blood pressure QTL 406	6.06		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	32199534	86201342	Rat
7488966	Bp370	Blood pressure QTL 370		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23858926	68858926	Rat
152023737	Bp405	Blood pressure QTL 405	5.06		arterial blood pressure trait (VT:2000000)			24136127	84432719	Rat
152023736	Bp404	Blood pressure QTL 404	3.78		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
724528	Uae4	Urinary albumin excretion QTL 4	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	17	36045537	81045537	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000024022 ⟹ ENSRNOP00000024022

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	56,284,286 - 56,397,563 (+)	Ensembl
mRatBN7.2 Ensembl	17	51,588,842 - 51,702,080 (+)	Ensembl
Rnor_6.0 Ensembl	17	54,280,851 - 54,394,634 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084919 ⟹ ENSRNOP00000072043

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	56,284,317 - 56,396,781 (+)	Ensembl
mRatBN7.2 Ensembl	17	51,588,900 - 51,701,308 (+)	Ensembl
Rnor_6.0 Ensembl	17	54,298,409 - 54,392,712 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097647 ⟹ ENSRNOP00000094054

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	56,284,286 - 56,397,563 (+)	Ensembl
mRatBN7.2 Ensembl	17	51,588,842 - 51,702,080 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117680 ⟹ ENSRNOP00000092878

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	56,284,307 - 56,396,786 (+)	Ensembl
mRatBN7.2 Ensembl	17	51,588,842 - 51,702,080 (+)	Ensembl

RefSeq Acc Id:

NM_001107357 ⟹ NP_001100827

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	56,284,286 - 56,397,563 (+)	NCBI
mRatBN7.2	17	51,588,811 - 51,702,095 (+)	NCBI
Rnor_6.0	17	54,280,851 - 54,394,634 (+)	NCBI
Rnor_5.0	17	51,975,184 - 52,089,094 (+)	NCBI
RGSC_v3.4	17	59,797,507 - 59,910,741 (+)	RGD
Celera	17	47,599,059 - 47,712,148 (+)	RGD

Sequence:

show sequence

GTGCCCTGGAACTTACCCTCCCTCAGAGACCAGCTTGCGGGGACGCCCGGTTGTGGTTGCCGCG
GAGTGAGTGCTCTTCAGGCGGTTTCTCAGTCGCTCGGCCACTGCGCCGGATGAGGAGGGAGTTC
CCCGTCGCAAGGTTTAAATGAAACACCAGATGTTTACCGTCTTCCAAGTGTTATGTTAATGCAG
CGAGGCACAAGGCATAATGTGGCATGCTGTCTGTTTTGAGAGTGAGTATTACTGAGTAGAAATG
GCTGAGAGAAGTGGGAAGATTGCTTCAGGACAAGTGTATATTGAGGTGGAGTATGATTATGAGT
ATGAAGCAAAGGACAGGAAGATTGTGATCAGACAAGGGGAGCGCTACCTCCTGGTGAAGAAGAC
CAATGATGACTGGTGGCAAGTCAGACTTGATGAGAACTCTAAAGCATTTTATGTGCCAGCACAG
TATGTCAAAGAGGTCACTCGCAAAGCACTGATGCCACCCGTGAAGCAGACAACAGGACTGCCAA
ATAACTCTATGAAGACGACACAGAGTATGCATCTCCAGCGATCGACAGAAAATGTGAACAAAAT
GCCTGAGCTTTCAAGTTTTGGAAAGCCATCATCATCTGTTCAAGGAACAGGTCTTATTCGTGAT
GCCAATCAGAATTTTGGATCCAATTATAATTCAGGCCAGACTCTCAACCTAAGCCTGGACCTGA
CCCATAATAACGGGAAGTTTAACAGTGATTCACATTCTCCTAAAGTTTCCAGCCAGAATAGGAC
ACGCTTATTTGGTCATTTTCCCGGGCCAGAATTCTTGGACATAGAGAAGACTAGCTTCTCTCAG
GAACAGTCATGTGACTCAGCTGGAGAAGGCTCTGAAAGAACACACCAGGATTCCGAGTCTGGAG
ACGAGCTTAGCAGCAGCTCCACTGAGCAAATGAGGGCAACCACACCCCCTAATCAAGGAAGGCC
AGATTCTCCAGTTTATGCTAACCTACAGGAACTGAAAATATCGCAGTCTGCTCTTCCTCCTCTC
CCTGGGAGCCCAGCAATTCAAGTTAATGGGGAGTGGGAGACTCACAAAGACAGTTCAGGCCGTT
GTTACTACTATAACCGCACAACCCAGGAGCGAACCTGGAAACCACCTCGGTGGGCTCGGGATGT
GAGCACAAGCCGAGATTTTCAGAGCCCAGGAGAGCAAGAGCCTCTTTCATCAGAAGAAAACTAC
CACAGCAGTTGTTTCAGCCAGTCAGATAGTCAGTGTGGTTCTCCTCCCAGGGGTTGGTCAGAAG
AGCTGGATGAACGTGGGCATACCTTATATACCAGTGACTATACTAAGGGAAAAGTGGCTCAAGC
ATGTTGATGATCAAGGTAGACAGTATTACTATAGTGCAGACGGATCTCGGTCAGAATGGGAATT
GCCAAAGTATAATGCTTCATCTCAGCAGCAGAGAGAAATAATTAAAAGTAGGAGCTTGGACAGG
CGGCTGCAAGAACCAATAGTGTTAACTAAATGGAGACATAGCACCATTGTGTTGGACTCCAACG
ACAAGGATTCTCCAACCTCCACCAAACTCTGCTTACCTGAAAATGAATCTCCTCCTACTTCAAC
AAAGCATCAAGATCCAGGTCAGGAGAAATATGGATTGTTAAATGTAACAAAAATTACTGAAAAT
GGGAAAAAGGTTCGAAAAAACTGGTTGTCCTCTTGGGCAGTGTTGCAGGGTTCATCTTTACTTT
TTACGAAAACTCAAGGAAGTAGTACAAGCTGGTTTGGGAGTAATCAGTCCAAACCAGAATTCAC
AGTGGACCTGAAGGGGGCAGCGATTGAAATGGCATCAAAGGACAAATCAAGCAAGAAGAACGTA
TTTGAACTGAAAACCCGCCAAGGAACAGAACTGCTAATACAGTCTGATAACGATGCTGTTATTA
ATGATTGGTTTAAAGTTCTTAGTAGTACTATCAATAACCAGGTAGCAGAGGCTGATGAAGCAGC
TGAAGAGGAGGCGCCAGATTCACCTGGGGTAGAAAAGCAGGATAAAGAAAAGGACCAGAAGGAG
CTTAAAAAACTTCGCTCAATGAAAGGATCCAGCATGGATTCTTCAGAGCAGAAGAAAACTAAGA
AAAACTTAAAGAAGTTTCTTACCCGGCGCCCCACTTTGCAAGCTGTTCGTGAGAAAGGTTATAT
CAAAGATCAGGTATTTGGATCTAATCTTGCTAATCTGTGTCAGAGAGAGAATGGGACAGTGCCA
AAGTTTGTGAAGTTATGCATTGAGCACGTCGAAGAGCATGGTTTAGATGTTGATGGGATCTACA
GAGTGAGTGGCAACCTGGCGGTGATCCAGAAGCTGAGGTTTGCAGTCAATCATGATGAGAAGTT
GGACTTGAACGACAGTAAATGGGAAGACATTCATGTCATCACAGGAGCACTCAAAATGTTTTTT
CGAGAATTACCAGAACCTCTTTTTACATTTAATCATTTCAATGATTTTGTTAATGCAATTAAAC
AAGAACCAAGACAGCGTGTCACTGCGGTTAAGGACCTAATCAGACAACTGCCAAAGCCAAATCA
AGACACAATGCAGATTCTGTTTAGACACCTCAAAAGGGTTATAGAAAATGGAGAAAAAAACCGA
ATGACCTATCAAAGCATAGCGATTGTTTTTGGCCCCACCCTTCTAAAGCCAGAAAGAGAGACTG
GTAATATAGCGGTTCATACTGTGTACCAAAACCAGATTGTAGAGCTGATTCTCCTGGAATTAAG
CACTGTCTTTGGACGTTGACTCTTATGAAAGACAGCCTATGGAATAGATGCTGGATTCCAAGAT
TTCAAGTCTTACACATGGTGTGTTTCATTTTGGACCAAGCAGTGACTCTGATTTTGCACTTTTT
TGAGGGTCAGAGAGGAAGAAGAGAGTGAAGGCACCAGCTGGGACCTCATTTGCTGCTTTGTTGG
CTGTAAATTTGGATTCATTTTATCCTGGATGCTTGCATTTCATCCTCCAAATATCAGTAAACAT
CAAAACTCAGAATTCTGACCAGTCATATACACTGGATAATTTGGTAAGGACAACCATTTAGGTC
CCCTGCGGTATTGTCCTTGCCATCTTCAAACTGGATAATGTAGATTCCTTCTCATGGTCCATAA
GCTCTTTACTTGGTACAATGATACTCACTGTCAGTTATTTTAAAAATGCTCTTGGGCATTTAAG
ACAAATGAAGTTGATCCATTTCAAGCCTGTGTACTGCTTTTTTCAGGGTGTTTGCATGAGTGGC
AGTCTTAAGTGCCGAAGCTCATAACCCAGGTAGAATCCCTGGGTGAAGGTTTGCTGTCTAATTT
TACTGTCTCATGGCATTTTTCTAGATACCTTAGTGGTCTGTTGGAGCAGCACACTGACAGGACT
TAAAACACTGTGATATACTGGAGTTCTGGTTAGTCTAAGTCAAATCAGGGTATTTGGTACCTGT
CTTGCTGTACTGAATTATAGCTAACAATCTTTATTATATTTAGTGCCATGTTGAGTTTTTGGTA
TGATCCTGTGGAAACAGACATTGTTTGATGTAAGTATGGGCTAAGGACCTAATATAATTTACCT
TATGTATATAACTGTGTTGTATAGGCTCAGAGTACATCTAACTCAATGTTTCTAATCATGACAT
TGTTAACTGTTTCCATGAATATTTGGCTTCCTCCAGACAGAGGCCATTATTTGGGAAAGTTAAA
TTGTGCACTTTTAGGTTTTAATTACAATTATAGGCAGACCACTGCTATGAGAATGGTACTGAGA
AATACTGAATAGACTTGCTAAATAGTGAAACACTACGGGAGCAGCTCCTTAGGTTATTTAATAT
GTACAGAAGACATTAGAAAAATGATTATAGAATTCTAACCCCAGCTAAAATAGCGGAAACCTGT
ACATTGGATGTTGGATAGAAAATGACACTGCAAAATTTTAGTATTTTCTTTTTAAATTACTAAT
GAAGATTGATTTGTATAATAAAACAGGGTTTGGAAGGTTTTGTTAGAGGGAGGCATGGTCTGTT
GAAGATTTTTAAATGTATTTTTCTAGATTAACTGCTGTATATGAAATGTCTAATCTAATAAAGG
AAACTACAATATGCTTAGTTTTTTTCCCATTGGAAATGTGCATTTTGGTTCTTAATTTTGTTAT
TGTTTTGTTTTTATTTACTGGCATACTTTTATACCTCATTTTAGAAAATCAACCAAATCCATAT
TTCTTGTGGTAGATTGACTTTTCTCATTTCATATGTTTTCTTTTTTTTTTTTTTTTTCTGTACC
AACATTTCCCTAACACCACACACTTCCTCATCATCAGTGTTTGAAAGGAAATGATTTCTGACCA
TGATCCTTTTTCCTAGGATCATTGATGATTTTCCAGATTACCTTCGGGGGAGGGGGGGGGGATA
ATCTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTGTCCAAAACCTTTCTCCTAAGT
CTTGTGGCTAAGATATTGTGTGTGTTGTTGTAATCTTAAGTAGGTAACAAACCAAGCTGCTTGA
CAGCTCATGCAGATTGCTTTGGGTGGGGAGAAATTCTAAACCAGAATGTATAGACTTGAAGATG
CCATTAATAACATAGTGTACTAGAGCTCTTGTATCTTGACTGTGTACCAGGAAATCAATTAGAC
TCAAATTTGTGATCTGTGGTGTTCTTGCTCTTGGTGATCATGAACATGTCAAAAGTTTTAAATT
GTCCTGTGTTTCTTGTTTCAAAGTACATGTGTGTATGCAAAGTCTTTAATGTTGTATTGGTCTA
CCACTAATAATTGTATTGTAATAGTGTATGTACAATGAGATAAGTGTCTTGTGTTTTCATCCTT
TGTGAATTAAAATTTATGGATTGTTTT

hide sequence

RefSeq Acc Id:

XM_006254012 ⟹ XP_006254074

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	56,284,282 - 56,397,630 (+)	NCBI
mRatBN7.2	17	51,588,812 - 51,702,417 (+)	NCBI
Rnor_6.0	17	54,280,815 - 54,394,716 (+)	NCBI
Rnor_5.0	17	51,975,184 - 52,089,094 (+)	NCBI

Sequence:

show sequence

AGTGCCCGCCCCGCCCCCGCGCCGGCGCGCTCCGACGTGCCCTGGAACTTACCCTCCCTCAGAG
ACCAGCTTGCGGGGACGCCCGGTTGTGGTTGCCGCGGAGTGAGTGCTCTTCAGGCGGTTTCTCA
GTCGCTCGGCCACTGCGCCGGATGAGGAGGGAGTTCCCCGTCGCAAGGTCTCCAACCCTAGGTT
TAAATGAAACACCAGATGTTTACCGTCTTCCAAGTGTTATGTTAATGCAGCGAGGCACAAGGCA
TAATGTGGCATGCTGTCTGTTTTGAGAGTGAGTATTACTGAGTAGAAATGGCTGAGAGAAGTGG
GAAGATTGCTTCAGGACAAGTGTATATTGAGGTGGAGTATGATTATGAGTATGAAGCAAAGGAC
AGGAAGATTGTGATCAGACAAGGGGAGCGCTACCTCCTGGTGAAGAAGACCAATGATGACTGGT
GGCAAGTCAGACTTGATGAGAACTCTAAAGCATTTTATGTGCCAGCACAGTATGTCAAAGAGGT
CACTCGCAAAGCACTGATGCCACCCGTGAAGCAGACAACAGGACTGCCAAATAACTCTATGAAG
ACGACACAGAGTATGCATCTCCAGCGATCGACAGAAAATGTGAACAAAATGCCTGAGCTTTCAA
GTTTTGGAAAGCCATCATCATCTGTTCAAGGAACAGGTCTTATTCGTGATGCCAATCAGAATTT
TGGATCCAATTATAATTCAGGCCAGACTCTCAACCTAAGCCTGGACCTGACCCATAATAACGGG
AAGTTTAACAGTGATTCACATTCTCCTAAAGTTTCCAGCCAGAATAGGACACGCTTATTTGGTC
ATTTTCCCGGGCCAGAATTCTTGGACATAGAGAAGACTAGCTTCTCTCAGGAACAGTCATGTGA
CTCAGCTGGAGAAGGCTCTGAAAGAACACACCAGGATTCCGAGTCTGGAGACGAGCTTAGCAGC
AGCTCCACTGAGCAAATGAGGGCAACCACACCCCCTAATCAAGGAAGGCCAGATTCTCCAGTTT
ATGCTAACCTACAGGAACTGAAAATATCGCAGTCTGCTCTTCCTCCTCTCCCTGGGAGCCCAGC
AATTCAAGTTAATGGGGAGTGGGAGACTCACAAAGACAGTTCAGGCCGTTGTTACTACTATAAC
CGCACAACCCAGGAGCGAACCTGGAAACCACCTCGGTGGGCTCGGGATGTGAGCACAAGCCGAG
ATTTTCAGAGCCCAGGAGAGCAAGAGCCTCTTTCATCAGAAGAAAACTACCACAGCAGTTGTTT
CAGCCAGTCAGATAGTCAGTGTGGTTCTCCTCCCAGGGGTTGGTCAGAAGAGCTGGATGAACGT
GGGCATACCTTATATACCAGTGACTATACTAAGGAAAAGTGGCTCAAGCATGTTGATGATCAAG
GTAGACAGTATTACTATAGTGCAGACGGATCTCGGTCAGAATGGGAATTGCCAAAGTATAATGC
TTCATCTCAGCAGCAGAGAGAAATAATTAAAAGTAGGAGCTTGGACAGGCGGCTGCAAGAACCA
ATAGTGTTAACTAAATGGAGACATAGCACCATTGTGTTGGACTCCAACGACAAGGGTCAGGAGA
AATATGGATTGTTAAATGTAACAAAAATTACTGAAAATGGGAAAAAGGTTCGAAAAAACTGGTT
GTCCTCTTGGGCAGTGTTGCAGGGTTCATCTTTACTTTTTACGAAAACTCAAGGAAGTAGTACA
AGCTGGTTTGGGAGTAATCAGTCCAAACCAGAATTCACAGTGGACCTGAAGGGGGCAGCGATTG
AAATGGCATCAAAGGACAAATCAAGCAAGAAGAACGTATTTGAACTGAAAACCCGCCAAGGAAC
AGAACTGCTAATACAGTCTGATAACGATGCTGTTATTAATGATTGGTTTAAAGTTCTTAGTAGT
ACTATCAATAACCAGGTAGCAGAGGCTGATGAAGCAGCTGAAGAGGAGGCGCCAGATTCACCTG
GGGTAGAAAAGCAGGATAAAGAAAAGGACCAGAAGGAGCTTAAAAAACTTCGCTCAATGAAAGG
ATCCAGCATGGATTCTTCAGAGCAGAAGAAAACTAAGAAAAACTTAAAGAAGTTTCTTACCCGG
CGCCCCACTTTGCAAGCTGTTCGTGAGAAAGGTTATATCAAAGATCAGGTATTTGGATCTAATC
TTGCTAATCTGTGTCAGAGAGAGAATGGGACAGTGCCAAAGTTTGTGAAGTTATGCATTGAGCA
CGTCGAAGAGCATGGTTTAGATGTTGATGGGATCTACAGAGTGAGTGGCAACCTGGCGGTGATC
CAGAAGCTGAGGTTTGCAGTCAATCATGATGAGAAGTTGGACTTGAACGACAGTAAATGGGAAG
ACATTCATGTCATCACAGGAGCACTCAAAATGTTTTTTCGAGAATTACCAGAACCTCTTTTTAC
ATTTAATCATTTCAATGATTTTGTTAATGCAATTAAACAAGAACCAAGACAGCGTGTCACTGCG
GTTAAGGACCTAATCAGACAACTGCCAAAGCCAAATCAAGACACAATGCAGATTCTGTTTAGAC
ACCTCAAAAGGGTTATAGAAAATGGAGAAAAAAACCGAATGACCTATCAAAGCATAGCGATTGT
TTTTGGCCCCACCCTTCTAAAGCCAGAAAGAGAGACTGGTAATATAGCGGTTCATACTGTGTAC
CAAAACCAGATTGTAGAGCTGATTCTCCTGGAATTAAGCACTGTCTTTGGACGTTGACTCTTAT
GAAAGACAGCCTATGGAATAGATGCTGGATTCCAAGATTTCAAGTCTTACACATGGTGTGTTTC
ATTTTGGACCAAGCAGTGACTCTGATTTTGCACTTTTTTGAGGGTCAGAGAGGAAGAAGAGAGT
GAAGGCACCAGCTGGGACCTCATTTGCTGCTTTGTTGGCTGTAAATTTGGATTCATTTTATCCT
GGATGCTTGCATTTCATCCTCCAAATATCAGTAAACATCAAAACTCAGAATTCTGACCAGTCAT
ATACACTGGATAATTTGGTAAGGACAACCATTTAGGTCCCCTGCGGTATTGTCCTTGCCATCTT
CAAACTGGATAATGTAGATTCCTTCTCATGGTCCATAAGCTCTTTACTTGGTACAATGATACTC
ACTGTCAGTTATTTTAAAAATGCTCTTGGGCATTTAAGACAAATGAAGTTGATCCATTTCAAGC
CTGTGTACTGCTTTTTTCAGGGTGTTTGCATGAGTGGCAGTCTTAAGTGCCGAAGCTCATAACC
CAGGTAGAATCCCTGGGTGAAGGTTTGCTGTCTAATTTTACTGTCTCATGGCATTTTTCTAGAT
ACCTTAGTGGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGAGTTC
TGGTTAGTCTAAGTCAAATCAGGGTATTTGGTACCTGTCTTGCTGTACTGAATTATAGCTAACA
ATCTTTATTATATTTAGTGCCATGTTGAGTTTTTGGTATGATCCTGTGGAAACAGACATTGTTT
GATGTAAGTATGGGCTAAGGACCTAATATAATTTACCTTATGTATATAACTGTGTTGTATAGGC
TCAGAGTACATCTAACTCAATGTTTCTAATCATGACATTGTTAACTGTTTCCATGAATATTTGG
CTTCCTCCAGACAGAGGCCATTATTTGGGAAAGTTAAATTGTGCACTTTTAGGTTTTAATTACA
ATTATAGGCAGACCACTGCTATGAGAATGGTACTGAGAAATACTGAATAGACTTGCTAAATAGT
GAAACACTACGGGAGCAGCTCCTTAGGTTATTTAATATGTACAGAAGACATTAGAAAAATGATT
ATAGAATTCTAACCCCAGCTAAAATAGCGGAAACCTGTACATTGGATGTTGGATAGAAAATGAC
ACTGCAAAATTTTAGTATTTTCTTTTTAAATTACTAATGAAGATTGATTTGTATAATAAAACAG
GGTTTGGAAGGTTTTGTTAGAGGGAGGCATGGTCTGTTGAAGATTTTTAAATGTATTTTTCTAG
ATTAACTGCTGTATATGAAATGTCTAATCTAATAAAGGAAACTACAATATGCTTAGTTTTTTTC
CCATTGGAAATGTGCATTTTGGTTCTTAATTTTGTTATTGTTTTGTTTTTATTTACTGGCATAC
TTTTATACCTCATTTTAGAAAATCAACCAAATCCATATTTCTTGTGGTAGATTGACTTTTCTCA
TTTCATATGTTTTCTTTTTTTTTTTTTTTTTCTGTACCAACATTTCCCTAACACCACACACTTC
CTCATCATCAGTGTTTGAAAGGAAATGATTTCTGACCATGATCCTTTTTCCTAGGATCATTGAT
GATTTTCCAGATTACCTTCGGGGGAGGGGGGGGGGATAATCTGTGTGGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTTCTGTCCAAAACCTTTCTCCTAAGTCTTGTGGCTAAGATATTGTGTGTGTT
GTTGTAATCTTAAGTAGGTAACAAACCAAGCTGCTTGACAGCTCATGCAGATTGCTTTGGGTGG
GGAGAAATTCTAAACCAGAATGTATAGACTTGAAGATGCCATTAATAACATAGTGTACTAGAGC
TCTTGTATCTTGACTGTGTACCAGGAAATCAATTAGACTCAAATTTGTGATCTGTGGTGTTCTT
GCTCTTGGTGATCATGAACATGTCAAAAGTTTTAAATTGTCCTGTGTTTCTTGTTTCAAAGTAC
ATGTGTGTATGCAAAGTCTTTAATGTTGTATTGGTCTACCACTAATAATTGTATTGTAATAGTG
TATGTACAATGAGATAAGTGTCTTGTGTTTTCATCCTTTGTGAATTAAAATTTATGGATTGTTT
TTGTAATAACAAAACCAGTAATATTTTCCTTCCTTGACAAGTTGATTTTTTTTAGCAGAAAGTA
TATTAAAAACTAAAATAAA

hide sequence

RefSeq Acc Id:

XM_006254013 ⟹ XP_006254075

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	56,284,283 - 56,397,630 (+)	NCBI
mRatBN7.2	17	51,588,810 - 51,702,417 (+)	NCBI
Rnor_6.0	17	54,280,815 - 54,394,716 (+)	NCBI
Rnor_5.0	17	51,975,184 - 52,089,094 (+)	NCBI

Sequence:

show sequence

AGTGCCCGCCCCGCCCCCGCGCCGGCGCGCTCCGACGTGCCCTGGAACTTACCCTCCCTCAGAG
ACCAGCTTGCGGGGACGCCCGGTTGTGGTTGCCGCGGAGTGAGTGCTCTTCAGGCGGTTTCTCA
GTCGCTCGGCCACTGCGCCGGATGAGGAGGGAGTTCCCCGTCGCAAGGTCTCCAACCCTAGGTT
TAAATGAAACACCAGATGTTTACCGTCTTCCAAGTGTTATGTTAATGCAGCGAGGCACAAGGCA
TAATGTGGCATGCTGTCTGTTTTGAGAGTGAGTATTACTGAGTAGAAATGGCTGAGAGAAGTGG
GAAGATTGCTTCAGGACAAGTGTATATTGAGGTGGAGTATGATTATGAGTATGAAGCAAAGGAC
AGGAAGATTGTGATCAGACAAGGGGAGCGCTACCTCCTGGTGAAGAAGACCAATGATGACTGGT
GGCAAGTCAGACTTGATGAGAACTCTAAAGCATTTTATGTGCCAGCACAGTATGTCAAAGAGGT
CACTCGCAAAGCACTGATGCCACCCGTGAAGCAGACAACAGGACTGCCAAATAACTCTATGAAG
ACGACACAGAGTATGCATCTCCAGCGATCGACAGAAAATGTGAACAAAATGCCTGAGCTTTCAA
GTTTTGGAAAGCCATCATCATCTGTTCAAGGAACAGGTCTTATTCGTGATGCCAATCAGAATTT
TGGATCCAATTATAATTCAGGCCAGACTCTCAACCTAAGCCTGGACCTGACCCATAATAACGGG
AAGTTTAACAGTGATTCACATTCTCCTAAAGTTTCCAGCCAGAATAGGACACGCTTATTTGGTC
ATTTTCCCGGGCCAGAATTCTTGGACATAGAGAAGACTAGCTTCTCTCAGGAACAGTCATGTGA
CTCAGCTGGAGAAGGCTCTGAAAGAACACACCAGGATTCCGAGTCTGGAGACGAGCTTAGCAGC
AGCTCCACTGAGCAAATGAGGGCAACCACACCCCCTAATCAAGGAAGGCCAGATTCTCCAGTTT
ATGCTAACCTACAGGAACTGAAAATATCGCAGTCTGCTCTTCCTCCTCTCCCTGGGAGCCCAGC
AATTCAAGTTAATGGGGAGTGGGAGACTCACAAAGACAGTTCAGGCCGTTGTTACTACTATAAC
CGCACAACCCAGGAGCGAACCTGGAAACCACCTCGGTGGGCTCGGGATGTGAGCACAAGCCGAG
ATTTTCAGAGCCCAGGAGAGCAAGAGTGGCTCAAGCATGTTGATGATCAAGGTAGACAGTATTA
CTATAGTGCAGACGGATCTCGGTCAGAATGGGAATTGCCAAAGTATAATGCTTCATCTCAGCAG
CAGAGAGAAATAATTAAAAGTAGGAGCTTGGACAGGCGGCTGCAAGAACCAATAGTGTTAACTA
AATGGAGACATAGCACCATTGTGTTGGACTCCAACGACAAGGATTCTCCAACCTCCACCAAACT
CTGCTTACCTGAAAATGAATCTCCTCCTACTTCAACAAAGCATCAAGATCCAGGTCAGGAGAAA
TATGGATTGTTAAATGTAACAAAAATTACTGAAAATGGGAAAAAGGTTCGAAAAAACTGGTTGT
CCTCTTGGGCAGTGTTGCAGGGTTCATCTTTACTTTTTACGAAAACTCAAGGAAGTAGTACAAG
CTGGTTTGGGAGTAATCAGTCCAAACCAGAATTCACAGTGGACCTGAAGGGGGCAGCGATTGAA
ATGGCATCAAAGGACAAATCAAGCAAGAAGAACGTATTTGAACTGAAAACCCGCCAAGGAACAG
AACTGCTAATACAGTCTGATAACGATGCTGTTATTAATGATTGGTTTAAAGTTCTTAGTAGTAC
TATCAATAACCAGGTAGCAGAGGCTGATGAAGCAGCTGAAGAGGAGGCGCCAGATTCACCTGGG
GTAGAAAAGCAGGATAAAGAAAAGGACCAGAAGGAGCTTAAAAAACTTCGCTCAATGAAAGGAT
CCAGCATGGATTCTTCAGAGCAGAAGAAAACTAAGAAAAACTTAAAGAAGTTTCTTACCCGGCG
CCCCACTTTGCAAGCTGTTCGTGAGAAAGGTTATATCAAAGATCAGGTATTTGGATCTAATCTT
GCTAATCTGTGTCAGAGAGAGAATGGGACAGTGCCAAAGTTTGTGAAGTTATGCATTGAGCACG
TCGAAGAGCATGGTTTAGATGTTGATGGGATCTACAGAGTGAGTGGCAACCTGGCGGTGATCCA
GAAGCTGAGGTTTGCAGTCAATCATGATGAGAAGTTGGACTTGAACGACAGTAAATGGGAAGAC
ATTCATGTCATCACAGGAGCACTCAAAATGTTTTTTCGAGAATTACCAGAACCTCTTTTTACAT
TTAATCATTTCAATGATTTTGTTAATGCAATTAAACAAGAACCAAGACAGCGTGTCACTGCGGT
TAAGGACCTAATCAGACAACTGCCAAAGCCAAATCAAGACACAATGCAGATTCTGTTTAGACAC
CTCAAAAGGGTTATAGAAAATGGAGAAAAAAACCGAATGACCTATCAAAGCATAGCGATTGTTT
TTGGCCCCACCCTTCTAAAGCCAGAAAGAGAGACTGGTAATATAGCGGTTCATACTGTGTACCA
AAACCAGATTGTAGAGCTGATTCTCCTGGAATTAAGCACTGTCTTTGGACGTTGACTCTTATGA
AAGACAGCCTATGGAATAGATGCTGGATTCCAAGATTTCAAGTCTTACACATGGTGTGTTTCAT
TTTGGACCAAGCAGTGACTCTGATTTTGCACTTTTTTGAGGGTCAGAGAGGAAGAAGAGAGTGA
AGGCACCAGCTGGGACCTCATTTGCTGCTTTGTTGGCTGTAAATTTGGATTCATTTTATCCTGG
ATGCTTGCATTTCATCCTCCAAATATCAGTAAACATCAAAACTCAGAATTCTGACCAGTCATAT
ACACTGGATAATTTGGTAAGGACAACCATTTAGGTCCCCTGCGGTATTGTCCTTGCCATCTTCA
AACTGGATAATGTAGATTCCTTCTCATGGTCCATAAGCTCTTTACTTGGTACAATGATACTCAC
TGTCAGTTATTTTAAAAATGCTCTTGGGCATTTAAGACAAATGAAGTTGATCCATTTCAAGCCT
GTGTACTGCTTTTTTCAGGGTGTTTGCATGAGTGGCAGTCTTAAGTGCCGAAGCTCATAACCCA
GGTAGAATCCCTGGGTGAAGGTTTGCTGTCTAATTTTACTGTCTCATGGCATTTTTCTAGATAC
CTTAGTGGTCTGTTGGAGCAGCACACTGACAGGACTTAAAACACTGTGATATACTGGAGTTCTG
GTTAGTCTAAGTCAAATCAGGGTATTTGGTACCTGTCTTGCTGTACTGAATTATAGCTAACAAT
CTTTATTATATTTAGTGCCATGTTGAGTTTTTGGTATGATCCTGTGGAAACAGACATTGTTTGA
TGTAAGTATGGGCTAAGGACCTAATATAATTTACCTTATGTATATAACTGTGTTGTATAGGCTC
AGAGTACATCTAACTCAATGTTTCTAATCATGACATTGTTAACTGTTTCCATGAATATTTGGCT
TCCTCCAGACAGAGGCCATTATTTGGGAAAGTTAAATTGTGCACTTTTAGGTTTTAATTACAAT
TATAGGCAGACCACTGCTATGAGAATGGTACTGAGAAATACTGAATAGACTTGCTAAATAGTGA
AACACTACGGGAGCAGCTCCTTAGGTTATTTAATATGTACAGAAGACATTAGAAAAATGATTAT
AGAATTCTAACCCCAGCTAAAATAGCGGAAACCTGTACATTGGATGTTGGATAGAAAATGACAC
TGCAAAATTTTAGTATTTTCTTTTTAAATTACTAATGAAGATTGATTTGTATAATAAAACAGGG
TTTGGAAGGTTTTGTTAGAGGGAGGCATGGTCTGTTGAAGATTTTTAAATGTATTTTTCTAGAT
TAACTGCTGTATATGAAATGTCTAATCTAATAAAGGAAACTACAATATGCTTAGTTTTTTTCCC
ATTGGAAATGTGCATTTTGGTTCTTAATTTTGTTATTGTTTTGTTTTTATTTACTGGCATACTT
TTATACCTCATTTTAGAAAATCAACCAAATCCATATTTCTTGTGGTAGATTGACTTTTCTCATT
TCATATGTTTTCTTTTTTTTTTTTTTTTTCTGTACCAACATTTCCCTAACACCACACACTTCCT
CATCATCAGTGTTTGAAAGGAAATGATTTCTGACCATGATCCTTTTTCCTAGGATCATTGATGA
TTTTCCAGATTACCTTCGGGGGAGGGGGGGGGGATAATCTGTGTGGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTTCTGTCCAAAACCTTTCTCCTAAGTCTTGTGGCTAAGATATTGTGTGTGTTGT
TGTAATCTTAAGTAGGTAACAAACCAAGCTGCTTGACAGCTCATGCAGATTGCTTTGGGTGGGG
AGAAATTCTAAACCAGAATGTATAGACTTGAAGATGCCATTAATAACATAGTGTACTAGAGCTC
TTGTATCTTGACTGTGTACCAGGAAATCAATTAGACTCAAATTTGTGATCTGTGGTGTTCTTGC
TCTTGGTGATCATGAACATGTCAAAAGTTTTAAATTGTCCTGTGTTTCTTGTTTCAAAGTACAT
GTGTGTATGCAAAGTCTTTAATGTTGTATTGGTCTACCACTAATAATTGTATTGTAATAGTGTA
TGTACAATGAGATAAGTGTCTTGTGTTTTCATCCTTTGTGAATTAAAATTTATGGATTGTTTTT
GTAATAACAAAACCAGTAATATTTTCCTTCCTTGACAAGTTGATTTTTTTTAGCAGAAAGTATA
TTAAAAACTAAAATAAA

hide sequence

RefSeq Acc Id:

XM_063276459 ⟹ XP_063132529

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	56,304,236 - 56,397,630 (+)	NCBI

RefSeq Acc Id:

XM_063276460 ⟹ XP_063132530

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	56,355,956 - 56,397,630 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100827	(Get FASTA)	NCBI Sequence Viewer
	XP_006254074	(Get FASTA)	NCBI Sequence Viewer
	XP_006254075	(Get FASTA)	NCBI Sequence Viewer
	XP_063132529	(Get FASTA)	NCBI Sequence Viewer
	XP_063132530	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL87436	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000024022
	ENSRNOP00000024022.7
	ENSRNOP00000072043
	ENSRNOP00000072043.2
	ENSRNOP00000092878
	ENSRNOP00000092878.1
	ENSRNOP00000094054.1

RefSeq Acc Id:

NP_001100827 ⟸ NM_001107357

- UniProtKB:

D3ZDI5 (UniProtKB/TrEMBL), A0A8I6AN18 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNVGIPYIPVTILREKWLKHVDDQGRQYYYSADGSRSEWELPKYNASSQQQREIIKSRSLDRRL
QEPIVLTKWRHSTIVLDSNDKDSPTSTKLCLPENESPPTSTKHQDPGQEKYGLLNVTKITENGK
KVRKNWLSSWAVLQGSSLLFTKTQGSSTSWFGSNQSKPEFTVDLKGAAIEMASKDKSSKKNVFE
LKTRQGTELLIQSDNDAVINDWFKVLSSTINNQVAEADEAAEEEAPDSPGVEKQDKEKDQKELK
KLRSMKGSSMDSSEQKKTKKNLKKFLTRRPTLQAVREKGYIKDQVFGSNLANLCQRENGTVPKF
VKLCIEHVEEHGLDVDGIYRVSGNLAVIQKLRFAVNHDEKLDLNDSKWEDIHVITGALKMFFRE
LPEPLFTFNHFNDFVNAIKQEPRQRVTAVKDLIRQLPKPNQDTMQILFRHLKRVIENGEKNRMT
YQSIAIVFGPTLLKPERETGNIAVHTVYQNQIVELILLELSTVFGR

hide sequence

RefSeq Acc Id:	XP_006254075 ⟸ XM_006254013
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AW83 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAERSGKIASGQVYIEVEYDYEYEAKDRKIVIRQGERYLLVKKTNDDWWQVRLDENSKAFYVPA QYVKEVTRKALMPPVKQTTGLPNNSMKTTQSMHLQRSTENVNKMPELSSFGKPSSSVQGTGLIR DANQNFGSNYNSGQTLNLSLDLTHNNGKFNSDSHSPKVSSQNRTRLFGHFPGPEFLDIEKTSFS QEQSCDSAGEGSERTHQDSESGDELSSSSTEQMRATTPPNQGRPDSPVYANLQELKISQSALPP LPGSPAIQVNGEWETHKDSSGRCYYYNRTTQERTWKPPRWARDVSTSRDFQSPGEQEWLKHVDD QGRQYYYSADGSRSEWELPKYNASSQQQREIIKSRSLDRRLQEPIVLTKWRHSTIVLDSNDKDS PTSTKLCLPENESPPTSTKHQDPGQEKYGLLNVTKITENGKKVRKNWLSSWAVLQGSSLLFTKT QGSSTSWFGSNQSKPEFTVDLKGAAIEMASKDKSSKKNVFELKTRQGTELLIQSDNDAVINDWF KVLSSTINNQVAEADEAAEEEAPDSPGVEKQDKEKDQKELKKLRSMKGSSMDSSEQKKTKKNLK KFLTRRPTLQAVREKGYIKDQVFGSNLANLCQRENGTVPKFVKLCIEHVEEHGLDVDGIYRVSG NLAVIQKLRFAVNHDEKLDLNDSKWEDIHVITGALKMFFRELPEPLFTFNHFNDFVNAIKQEPR QRVTAVKDLIRQLPKPNQDTMQILFRHLKRVIENGEKNRMTYQSIAIVFGPTLLKPERETGNIA VHTVYQNQIVELILLELSTVFGR hide sequence

RefSeq Acc Id:	XP_006254074 ⟸ XM_006254012
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K1Z2 (UniProtKB/TrEMBL), A0A8I6AN18 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAERSGKIASGQVYIEVEYDYEYEAKDRKIVIRQGERYLLVKKTNDDWWQVRLDENSKAFYVPA QYVKEVTRKALMPPVKQTTGLPNNSMKTTQSMHLQRSTENVNKMPELSSFGKPSSSVQGTGLIR DANQNFGSNYNSGQTLNLSLDLTHNNGKFNSDSHSPKVSSQNRTRLFGHFPGPEFLDIEKTSFS QEQSCDSAGEGSERTHQDSESGDELSSSSTEQMRATTPPNQGRPDSPVYANLQELKISQSALPP LPGSPAIQVNGEWETHKDSSGRCYYYNRTTQERTWKPPRWARDVSTSRDFQSPGEQEPLSSEEN YHSSCFSQSDSQCGSPPRGWSEELDERGHTLYTSDYTKEKWLKHVDDQGRQYYYSADGSRSEWE LPKYNASSQQQREIIKSRSLDRRLQEPIVLTKWRHSTIVLDSNDKGQEKYGLLNVTKITENGKK VRKNWLSSWAVLQGSSLLFTKTQGSSTSWFGSNQSKPEFTVDLKGAAIEMASKDKSSKKNVFEL KTRQGTELLIQSDNDAVINDWFKVLSSTINNQVAEADEAAEEEAPDSPGVEKQDKEKDQKELKK LRSMKGSSMDSSEQKKTKKNLKKFLTRRPTLQAVREKGYIKDQVFGSNLANLCQRENGTVPKFV KLCIEHVEEHGLDVDGIYRVSGNLAVIQKLRFAVNHDEKLDLNDSKWEDIHVITGALKMFFREL PEPLFTFNHFNDFVNAIKQEPRQRVTAVKDLIRQLPKPNQDTMQILFRHLKRVIENGEKNRMTY QSIAIVFGPTLLKPERETGNIAVHTVYQNQIVELILLELSTVFGR hide sequence

Ensembl Acc Id:

ENSRNOP00000072043 ⟸ ENSRNOT00000084919

Ensembl Acc Id:

ENSRNOP00000024022 ⟸ ENSRNOT00000024022

Ensembl Acc Id:

ENSRNOP00000092878 ⟸ ENSRNOT00000117680

Ensembl Acc Id:

ENSRNOP00000094054 ⟸ ENSRNOT00000097647

RefSeq Acc Id:	XP_063132529 ⟸ XM_063276459
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AW83 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132530 ⟸ XM_063276460
- Peptide Label:	isoform X4

Protein Domains

PH Rho-GAP SH3 WW

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K1Z2-F1-model_v2	AlphaFold	A0A0G2K1Z2	1-838	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700521

Promoter ID:

EPDNEW_R11044

Type:

initiation region

Name:

Arhgap12_1

Description:

Rho GTPase activating protein 12

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	54,280,875 - 54,280,935	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310017	AgrOrtholog
BioCyc Gene	G2FUF-9059	BioCyc
Ensembl Genes	ENSRNOG00000017791	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000024022	ENTREZGENE
	ENSRNOT00000024022.8	UniProtKB/TrEMBL
	ENSRNOT00000084919	ENTREZGENE
	ENSRNOT00000084919.3	UniProtKB/TrEMBL
	ENSRNOT00000097647.2	UniProtKB/TrEMBL
	ENSRNOT00000117680	ENTREZGENE
	ENSRNOT00000117680.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.555.10	UniProtKB/TrEMBL
	2.20.70.10	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/TrEMBL
InterPro	ARHGAP12_SH3	UniProtKB/TrEMBL
	PH_type	UniProtKB/TrEMBL
	Pleckstrin_homology	UniProtKB/TrEMBL
	Rho-GAP	UniProtKB/TrEMBL
	Rho_GTPase_activation_prot	UniProtKB/TrEMBL
	RhoGAP	UniProtKB/TrEMBL
	SH3-like_dom	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
	WW_dom_sf	UniProtKB/TrEMBL
	WW_Rsp5_WWP	UniProtKB/TrEMBL
KEGG Report	rno:307016	UniProtKB/TrEMBL
NCBI Gene	307016	ENTREZGENE
PANTHER	RHO GTPASE-ACTIVATING PROTEIN 12	UniProtKB/TrEMBL
	RHO/RAC/CDC GTPASE-ACTIVATING PROTEIN	UniProtKB/TrEMBL
Pfam	PF00169	UniProtKB/TrEMBL
	PF00397	UniProtKB/TrEMBL
	RhoGAP	UniProtKB/TrEMBL
	SH3-WW_linker	UniProtKB/TrEMBL
	SH3_1	UniProtKB/TrEMBL
PhenoGen	Arhgap12	PhenoGen
PROSITE	PH_DOMAIN	UniProtKB/TrEMBL
	RHOGAP	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
	WW_DOMAIN_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017791	RatGTEx
SMART	RhoGAP	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
	SM00233	UniProtKB/TrEMBL
	SM00456	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
	Rho_GAP	UniProtKB/TrEMBL
	SSF50044	UniProtKB/TrEMBL
	WW_Rsp5_WWP	UniProtKB/TrEMBL
UniProt	A0A0G2K1Z2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AN18	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AW83	ENTREZGENE, UniProtKB/TrEMBL
	A6K9E3_RAT	UniProtKB/TrEMBL
	D3ZDI5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Arhgap12	Rho GTPase activating protein 12	Arhgap12_predicted	Rho GTPase activating protein 12 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Arhgap12_predicted	Rho GTPase activating protein 12 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message