Rab6b (RAB6B, member RAS oncogene family) - Rat Genome Database

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Pathways
Gene: Rab6b (RAB6B, member RAS oncogene family) Rattus norvegicus
Analyze
Symbol: Rab6b
Name: RAB6B, member RAS oncogene family
RGD ID: 1309958
Description: Predicted to enable GTPase activity and myosin V binding activity. Predicted to be involved in several processes, including Golgi vesicle transport; protein localization to Golgi membrane; and retrograde transport, endosome to Golgi. Is active in presynapse. Orthologous to human RAB6B (RAB6B, member RAS oncogene family); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bis(2-ethylhexyl) phthalate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC363123; ras-related protein Rab-6B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,574,223 - 112,642,911 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8112,574,167 - 112,642,907 (+)EnsemblGRCr8
mRatBN7.28103,695,328 - 103,764,023 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8103,695,631 - 103,805,732 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8109,354,470 - 109,423,481 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,553,634 - 107,622,649 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08105,396,318 - 105,465,325 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,600,375 - 111,668,817 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,600,532 - 111,668,808 (+)Ensemblrn6Rnor6.0
Rnor_5.08110,991,008 - 111,059,794 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48108,151,061 - 108,192,013 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8103,101,314 - 103,142,215 (+)NCBICelera
RGSC_v3.18108,124,726 - 108,209,832 (+)NCBI
Cytogenetic Map8q32NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
Cuprizon  (EXP,ISO)
cyclosporin A  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (ISO)
dibutyl phthalate  (EXP)
diethyl phthalate  (EXP)
diisobutyl phthalate  (EXP)
diisononyl phthalate  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
fipronil  (EXP)
folic acid  (ISO)
furan  (EXP)
gamma-tocopherol  (ISO)
genistein  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
hydroquinone O-beta-D-glucopyranoside  (ISO)
kojic acid  (ISO)
lead(0)  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methoxychlor  (EXP)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
nitrates  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorohexanesulfonic acid  (ISO)
phenylmercury acetate  (ISO)
potassium dichromate  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sunitinib  (ISO)
thioacetamide  (EXP)
titanium dioxide  (EXP,ISO)
tocopherol  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Quantitative analysis of synaptic vesicle Rabs uncovers distinct yet overlapping roles for Rab3a and Rab27b in Ca2+-triggered exocytosis. Pavlos NJ, etal., J Neurosci. 2010 Oct 6;30(40):13441-53. doi: 10.1523/JNEUROSCI.0907-10.2010.
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:24006491  


Genomics

Comparative Map Data
Rab6b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,574,223 - 112,642,911 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8112,574,167 - 112,642,907 (+)EnsemblGRCr8
mRatBN7.28103,695,328 - 103,764,023 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8103,695,631 - 103,805,732 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8109,354,470 - 109,423,481 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,553,634 - 107,622,649 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08105,396,318 - 105,465,325 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,600,375 - 111,668,817 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,600,532 - 111,668,808 (+)Ensemblrn6Rnor6.0
Rnor_5.08110,991,008 - 111,059,794 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48108,151,061 - 108,192,013 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8103,101,314 - 103,142,215 (+)NCBICelera
RGSC_v3.18108,124,726 - 108,209,832 (+)NCBI
Cytogenetic Map8q32NCBI
RAB6B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383133,824,235 - 133,895,882 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3133,824,235 - 133,895,882 (-)Ensemblhg38GRCh38
GRCh373133,543,079 - 133,614,726 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363135,025,769 - 135,097,381 (-)NCBIBuild 36Build 36hg18NCBI36
Build 343135,025,784 - 135,097,137NCBI
Celera3131,968,881 - 132,040,477 (-)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3130,921,268 - 130,992,822 (-)NCBIHuRef
CHM1_13133,507,024 - 133,578,520 (-)NCBICHM1_1
T2T-CHM13v2.03136,569,430 - 136,641,051 (-)NCBIT2T-CHM13v2.0
Rab6b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399102,988,866 - 103,062,475 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9102,988,986 - 103,062,475 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm389103,111,667 - 103,185,276 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9103,111,787 - 103,185,276 (+)Ensemblmm10GRCm38
MGSCv379103,014,404 - 103,087,600 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369102,970,224 - 103,043,420 (+)NCBIMGSCv36mm8
Celera9102,662,484 - 102,735,933 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map954.88NCBI
Rab6b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555014,732,616 - 4,781,094 (+)Ensembl
ChiLan1.0NW_0049555014,751,647 - 4,781,094 (+)NCBIChiLan1.0ChiLan1.0
RAB6B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22131,748,402 - 131,820,183 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13131,753,131 - 131,824,912 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03130,869,494 - 130,941,280 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13138,344,807 - 138,416,358 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3138,344,815 - 138,416,358 (-)EnsemblpanPan2panpan1.1
RAB6B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12330,714,723 - 30,754,765 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2330,717,062 - 30,749,188 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2330,693,860 - 30,754,169 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02331,235,166 - 31,295,933 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2331,235,171 - 31,295,965 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12330,931,304 - 30,989,279 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02330,986,735 - 31,047,041 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02331,234,354 - 31,294,724 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rab6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560270,209,010 - 70,271,228 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365296,969,284 - 7,031,918 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365296,969,507 - 7,031,733 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1375,012,268 - 75,075,239 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11375,012,267 - 75,075,324 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21382,510,690 - 82,573,714 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB6B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11556,472,615 - 56,541,083 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1556,472,634 - 56,541,434 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604129,455,217 - 29,523,670 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab6b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473010,133,949 - 10,197,551 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473010,134,215 - 10,197,534 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rab6b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1894,411,440 - 94,478,151 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rab6b
560 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:602
Count of miRNA genes:265
Interacting mature miRNAs:363
Transcripts:ENSRNOT00000012219
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)897492344116428905Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8111249511117802327Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
D8Rat175  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr88112,566,432 - 112,566,555 (+)Marker Load Pipeline
mRatBN7.28103,687,536 - 103,687,659 (+)MAPPERmRatBN7.2
Rnor_6.08111,592,312 - 111,592,434NCBIRnor6.0
Rnor_5.08110,982,909 - 110,983,031UniSTSRnor5.0
RGSC_v3.48108,114,913 - 108,115,036RGDRGSC3.4
RGSC_v3.48108,114,914 - 108,115,036UniSTSRGSC3.4
Celera8103,066,183 - 103,066,305UniSTS
RGSC_v3.18108,134,368 - 108,134,491RGD
SHRSP x BN Map866.2399UniSTS
SHRSP x BN Map866.2399RGD
Cytogenetic Map8q32UniSTS
RH134267  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,763,734 - 103,763,916 (+)MAPPERmRatBN7.2
Rnor_6.08111,668,529 - 111,668,710NCBIRnor6.0
Rnor_5.08111,059,512 - 111,059,693UniSTSRnor5.0
RGSC_v3.48108,191,734 - 108,191,915UniSTSRGSC3.4
Celera8103,141,936 - 103,142,117UniSTS
RH 3.4 Map81158.0UniSTS
Cytogenetic Map8q32UniSTS
RH141805  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,761,457 - 103,761,638 (+)MAPPERmRatBN7.2
Rnor_6.08111,666,252 - 111,666,432NCBIRnor6.0
Rnor_5.08111,057,235 - 111,057,415UniSTSRnor5.0
RGSC_v3.48108,189,457 - 108,189,637UniSTSRGSC3.4
Celera8103,139,659 - 103,139,839UniSTS
RH 3.4 Map81163.8UniSTS
Cytogenetic Map8q32UniSTS
RH125121  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,763,855 - 103,763,998 (+)MAPPERmRatBN7.2
Rnor_6.08111,668,650 - 111,668,792NCBIRnor6.0
Rnor_5.08111,059,633 - 111,059,775UniSTSRnor5.0
RGSC_v3.48108,191,855 - 108,191,997UniSTSRGSC3.4
Celera8103,142,057 - 103,142,199UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 12 67 163 90 89 58 85 58 6 345 184 10 143 80 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000012219   ⟹   ENSRNOP00000012219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl8111,627,856 - 111,668,808 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000081952   ⟹   ENSRNOP00000068600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8112,574,194 - 112,642,907 (+)Ensembl
mRatBN7.2 Ensembl8103,695,631 - 103,805,732 (+)Ensembl
Rnor_6.0 Ensembl8111,600,532 - 111,664,987 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000142049   ⟹   ENSRNOP00000105510
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8112,574,167 - 112,636,314 (+)Ensembl
RefSeq Acc Id: NM_001108775   ⟹   NP_001102245
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,574,223 - 112,642,911 (+)NCBI
mRatBN7.28103,695,328 - 103,764,023 (+)NCBI
Rnor_6.08111,627,856 - 111,668,808 (+)NCBI
Rnor_5.08110,991,008 - 111,059,794 (+)NCBI
RGSC_v3.48108,151,061 - 108,192,013 (+)RGD
Celera8103,101,314 - 103,142,215 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102245 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL77393 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000068600
  ENSRNOP00000068600.1
  ENSRNOP00000105510.1
RefSeq Acc Id: NP_001102245   ⟸   NM_001108775
- UniProtKB: A0A0G2JT78 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012219   ⟸   ENSRNOT00000012219
Ensembl Acc Id: ENSRNOP00000068600   ⟸   ENSRNOT00000081952
Ensembl Acc Id: ENSRNOP00000105510   ⟸   ENSRNOT00000142049

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JT78-F1-model_v2 AlphaFold A0A0G2JT78 1-208 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696230
Promoter ID:EPDNEW_R6752
Type:multiple initiation site
Name:Rab6b_1
Description:RAB6B, member RAS oncogene family
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08111,600,552 - 111,600,612EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309958 AgrOrtholog
BioCyc Gene G2FUF-29334 BioCyc
Ensembl Genes ENSRNOG00000009198 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000081952 ENTREZGENE
  ENSRNOT00000081952.3 UniProtKB/TrEMBL
  ENSRNOT00000142049.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Rab UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
KEGG Report rno:363123 UniProtKB/TrEMBL
NCBI Gene 363123 ENTREZGENE
PANTHER RAS-RELATED PROTEIN RAB UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PhenoGen Rab6b PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009198 RatGTEx
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2JT78 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LP34_RAT UniProtKB/TrEMBL
  A6I2I4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Rab6b  RAB6B, member RAS oncogene family   Rab6b_predicted  RAB6B, member RAS oncogene family (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rab6b_predicted  RAB6B, member RAS oncogene family (predicted)      Symbol and Name status set to approved 70820 APPROVED