Tmem183a (transmembrane protein 183A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Tmem183a (transmembrane protein 183A) Rattus norvegicus
Analyze
Symbol: Tmem183a
Name: transmembrane protein 183A
RGD ID: 1309892
Description: Predicted to be located in membrane. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to several human genes including TMEM183A (transmembrane protein 183A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: clone MNCb-2755; LOC289034; RGD1309892; similar to RIKEN cDNA 1300007B12; Tmem183; transmembrane protein 183
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81348,355,664 - 48,372,437 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1348,355,889 - 48,372,381 (-)EnsemblGRCr8
mRatBN7.21345,803,641 - 45,820,409 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,803,639 - 45,820,375 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1348,412,387 - 48,427,608 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01349,700,452 - 49,715,674 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01346,965,560 - 46,980,595 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01351,184,647 - 51,201,401 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1351,184,629 - 51,201,364 (-)Ensemblrn6Rnor6.0
Rnor_5.01356,240,994 - 56,257,741 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41347,303,577 - 47,318,813 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1346,133,069 - 46,148,305 (-)NCBICelera
RGSC_v3.11347,317,621 - 47,332,856 (-)NCBI
Cytogenetic Map13q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334  


Genomics

Comparative Map Data
Tmem183a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81348,355,664 - 48,372,437 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1348,355,889 - 48,372,381 (-)EnsemblGRCr8
mRatBN7.21345,803,641 - 45,820,409 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,803,639 - 45,820,375 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1348,412,387 - 48,427,608 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01349,700,452 - 49,715,674 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01346,965,560 - 46,980,595 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01351,184,647 - 51,201,401 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1351,184,629 - 51,201,364 (-)Ensemblrn6Rnor6.0
Rnor_5.01356,240,994 - 56,257,741 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41347,303,577 - 47,318,813 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1346,133,069 - 46,148,305 (-)NCBICelera
RGSC_v3.11347,317,621 - 47,332,856 (-)NCBI
Cytogenetic Map13q13NCBI
TMEM183A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381203,007,374 - 203,024,848 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1203,007,356 - 203,024,848 (+)Ensemblhg38GRCh38
GRCh371202,976,502 - 202,993,976 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361201,243,159 - 201,259,291 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341199,708,192 - 199,724,324NCBI
Celera1176,105,772 - 176,122,430 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1174,142,136 - 174,158,805 (+)NCBIHuRef
CHM1_11204,398,835 - 204,415,499 (+)NCBICHM1_1
T2T-CHM13v2.01202,270,081 - 202,287,572 (+)NCBIT2T-CHM13v2.0
Tmem183a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391134,273,834 - 134,289,765 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1134,273,835 - 134,289,717 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381134,346,096 - 134,362,012 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,346,097 - 134,361,979 (-)Ensemblmm10GRCm38
MGSCv371136,242,674 - 136,258,576 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361136,161,788 - 136,178,366 (-)NCBIMGSCv36mm8
Celera1136,958,158 - 136,974,087 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.2NCBI
Tmem183a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,029,390 - 39,046,339 (+)Ensembl
ChiLan1.0NW_00495540639,029,390 - 39,044,502 (+)NCBIChiLan1.0ChiLan1.0
TMEM183A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2146,353,403 - 46,371,530 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1146,320,432 - 46,337,909 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01178,608,896 - 178,626,376 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11182,903,891 - 182,921,091 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1182,903,898 - 182,919,283 (+)EnsemblpanPan2panpan1.1
TMEM183A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.17166,640 - 180,680 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl7166,974 - 180,660 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha7222,297 - 236,341 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.07177,085 - 191,140 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl7177,096 - 191,163 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.17165,322 - 179,368 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.07274,851 - 288,898 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.07297,360 - 311,411 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tmem183a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934472,332,097 - 72,343,737 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365671,568,098 - 1,578,392 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365671,566,773 - 1,578,420 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM183A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9113,713,032 - 113,725,847 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.19113,713,046 - 113,726,645 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29125,173,389 - 125,185,839 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM183A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12526,329,213 - 26,346,850 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2526,328,841 - 26,346,750 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605527,104,474 - 27,122,123 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem183a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248077,807,543 - 7,822,825 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248077,807,543 - 7,822,789 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tmem183a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1101,328,305 - 1,345,095 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tmem183a
68 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:191
Count of miRNA genes:143
Interacting mature miRNAs:165
Transcripts:ENSRNOT00000005272
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131186625456866254Rat
6893344Cm79Cardiac mass QTL 791.50.04heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)134627292251216694Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132485392569853925Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133996821183286298Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131746828262468282Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)132433543255601132Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133708798382087983Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)134098358585983585Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131244842148744906Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
4145117Mcs27Mammary carcinoma susceptibility QTL 270.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)134599007750392939Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132624480871244808Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133379409678794096Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133483494779834947Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133379409660914504Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133981472684814726Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133996821184968211Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132624480871244808Rat
12879472Bp399Blood pressure QTL 399arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134778041850392939Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)133828629883286298Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131771133662711336Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131186625456866254Rat

Markers in Region
BF397521  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2692,688,747 - 92,688,895 (+)MAPPERmRatBN7.2
Rnor_6.0696,875,638 - 96,875,785NCBIRnor6.0
Rnor_5.06106,306,959 - 106,307,106UniSTSRnor5.0
RGSC_v3.4696,483,108 - 96,483,255UniSTSRGSC3.4
Celera691,145,414 - 91,145,561UniSTS
RH 3.4 Map6656.4UniSTS
Cytogenetic Map6q24UniSTS
Cytogenetic Map13q13UniSTS
SHGC-155248  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8698,424,562 - 98,424,797 (+)Marker Load Pipeline
mRatBN7.2692,688,759 - 92,688,994 (+)MAPPERmRatBN7.2
Rnor_6.0696,875,650 - 96,875,884NCBIRnor6.0
Rnor_5.06106,306,971 - 106,307,205UniSTSRnor5.0
RGSC_v3.4696,483,120 - 96,483,354UniSTSRGSC3.4
Celera691,145,426 - 91,145,660UniSTS
Cytogenetic Map6q24UniSTS
Cytogenetic Map13q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000005272   ⟹   ENSRNOP00000005272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1348,355,889 - 48,372,381 (-)Ensembl
mRatBN7.2 Ensembl1345,805,096 - 45,820,367 (-)Ensembl
Rnor_6.0 Ensembl1351,186,097 - 51,201,331 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000078990   ⟹   ENSRNOP00000068555
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1345,803,639 - 45,820,375 (-)Ensembl
Rnor_6.0 Ensembl1351,184,629 - 51,201,364 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100649   ⟹   ENSRNOP00000096186
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1348,355,889 - 48,372,381 (-)Ensembl
mRatBN7.2 Ensembl1345,803,872 - 45,820,367 (-)Ensembl
RefSeq Acc Id: NM_001013871   ⟹   NP_001013893
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,357,112 - 48,372,348 (-)NCBI
mRatBN7.21345,805,095 - 45,820,334 (-)NCBI
Rnor_6.01351,186,095 - 51,201,331 (-)NCBI
Rnor_5.01356,240,994 - 56,257,741 (-)NCBI
RGSC_v3.41347,303,577 - 47,318,813 (-)RGD
Celera1346,133,069 - 46,148,305 (-)RGD
Sequence:
RefSeq Acc Id: XM_006249849   ⟹   XP_006249911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,355,664 - 48,372,415 (-)NCBI
mRatBN7.21345,803,641 - 45,820,408 (-)NCBI
Rnor_6.01351,184,647 - 51,201,401 (-)NCBI
Rnor_5.01356,240,994 - 56,257,741 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006249850   ⟹   XP_006249912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,355,664 - 48,372,437 (-)NCBI
mRatBN7.21345,803,641 - 45,820,409 (-)NCBI
Rnor_6.01351,184,647 - 51,201,401 (-)NCBI
Rnor_5.01356,240,994 - 56,257,741 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005492211
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,361,614 - 48,372,437 (-)NCBI
mRatBN7.21345,809,577 - 45,820,408 (-)NCBI
RefSeq Acc Id: XR_005492212
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81348,361,614 - 48,372,437 (-)NCBI
mRatBN7.21345,807,244 - 45,820,408 (-)NCBI
RefSeq Acc Id: NP_001013893   ⟸   NM_001013871
- UniProtKB: Q68FS7 (UniProtKB/Swiss-Prot),   A6ICB4 (UniProtKB/TrEMBL),   A0A0G2JT36 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249912   ⟸   XM_006249850
- Peptide Label: isoform X2
- UniProtKB: A0A8L2Q253 (UniProtKB/TrEMBL),   A0A0G2JT36 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249911   ⟸   XM_006249849
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JT36 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000005272   ⟸   ENSRNOT00000005272
Ensembl Acc Id: ENSRNOP00000068555   ⟸   ENSRNOT00000078990
Ensembl Acc Id: ENSRNOP00000096186   ⟸   ENSRNOT00000100649

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68FS7-F1-model_v2 AlphaFold Q68FS7 1-376 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698834
Promoter ID:EPDNEW_R9353
Type:multiple initiation site
Name:Tmem183a_1
Description:transmembrane protein 183A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01351,201,368 - 51,201,428EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309892 AgrOrtholog
BioCyc Gene G2FUF-18242 BioCyc
Ensembl Genes ENSRNOG00000003594 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000005272 ENTREZGENE
  ENSRNOT00000100649 ENTREZGENE
  ENSRNOT00000100649.1 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7110239 IMAGE-MGC_LOAD
InterPro F-box-like_dom_sf UniProtKB/Swiss-Prot
  TMEM183 UniProtKB/Swiss-Prot
KEGG Report rno:289034 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94871 IMAGE-MGC_LOAD
NCBI Gene 289034 ENTREZGENE
PANTHER PTHR20988 UniProtKB/Swiss-Prot
  TRANSMEMBRANE PROTEIN 183A-RELATED UniProtKB/Swiss-Prot
PhenoGen Tmem183a PhenoGen
RatGTEx ENSRNOG00000003594 RatGTEx
Superfamily-SCOP SSF81383 UniProtKB/Swiss-Prot
UniProt A0A0G2JT36 ENTREZGENE
  A0A8L2Q253 ENTREZGENE, UniProtKB/TrEMBL
  A6ICB4 ENTREZGENE, UniProtKB/TrEMBL
  Q68FS7 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-26 Tmem183a  transmembrane protein 183A  RGD1309892  similar to RIKEN cDNA 1300007B12; clone MNCb-2755  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1309892  similar to RIKEN cDNA 1300007B12; clone MNCb-2755  RGD1309892_predicted  similar to RIKEN cDNA 1300007B12; clone MNCb-2755 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1309892_predicted  similar to RIKEN cDNA 1300007B12; clone MNCb-2755 (predicted)  LOC289034_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC289034_predicted  similar to RIKEN cDNA 1300007B12; clone MNCb-2755 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL