TMEM183A (transmembrane protein 183A) - Rat Genome Database

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Gene: TMEM183A (transmembrane protein 183A) Homo sapiens
Analyze
Symbol: TMEM183A
Name: transmembrane protein 183A
RGD ID: 1320480
HGNC Page HGNC:20173
Description: Predicted to be involved in regulation of protein stability. Predicted to be located in membrane. Predicted to be part of SCF ubiquitin ligase complex.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C1orf37; chromosome 1 open reading frame 37
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: LOC100420074   TMEM183AP1   TMEM183AP2   TMEM183AP3   TMEM183AP4   TMEM183AP5   TMEM183AP6  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381203,007,374 - 203,024,848 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1203,007,374 - 203,024,848 (+)EnsemblGRCh38hg38GRCh38
GRCh371202,976,502 - 202,993,976 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361201,243,159 - 201,259,291 (+)NCBINCBI36Build 36hg18NCBI36
Build 341199,708,192 - 199,724,324NCBI
Celera1176,105,772 - 176,122,430 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1174,142,136 - 174,158,805 (+)NCBIHuRef
CHM1_11204,398,835 - 204,415,499 (+)NCBICHM1_1
T2T-CHM13v2.01202,270,081 - 202,287,572 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8619474   PMID:9110174   PMID:12477932   PMID:15489334   PMID:16644869   PMID:17207965   PMID:17613536   PMID:19536175   PMID:21832049   PMID:21873635   PMID:25416956   PMID:28514442  
PMID:30833792   PMID:32296183   PMID:33961781  


Genomics

Comparative Map Data
TMEM183A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381203,007,374 - 203,024,848 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1203,007,374 - 203,024,848 (+)EnsemblGRCh38hg38GRCh38
GRCh371202,976,502 - 202,993,976 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361201,243,159 - 201,259,291 (+)NCBINCBI36Build 36hg18NCBI36
Build 341199,708,192 - 199,724,324NCBI
Celera1176,105,772 - 176,122,430 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1174,142,136 - 174,158,805 (+)NCBIHuRef
CHM1_11204,398,835 - 204,415,499 (+)NCBICHM1_1
T2T-CHM13v2.01202,270,081 - 202,287,572 (+)NCBIT2T-CHM13v2.0
Tmem183a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391134,273,834 - 134,289,765 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1134,273,835 - 134,289,717 (-)EnsemblGRCm39 Ensembl
GRCm381134,346,096 - 134,362,012 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,346,097 - 134,361,979 (-)EnsemblGRCm38mm10GRCm38
MGSCv371136,242,674 - 136,258,576 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361136,161,788 - 136,178,366 (-)NCBIMGSCv36mm8
Celera1136,958,158 - 136,974,087 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.2NCBI
Tmem183a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81348,355,664 - 48,372,437 (-)NCBIGRCr8
mRatBN7.21345,803,641 - 45,820,409 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,803,639 - 45,820,375 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1348,412,387 - 48,427,608 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01349,700,452 - 49,715,674 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01346,965,560 - 46,980,595 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01351,184,647 - 51,201,401 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1351,184,629 - 51,201,364 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01356,240,994 - 56,257,741 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41347,303,577 - 47,318,813 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11347,317,621 - 47,332,856 (-)NCBI
Celera1346,133,069 - 46,148,305 (-)NCBICelera
Cytogenetic Map13q13NCBI
Tmem183a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,029,390 - 39,046,339 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540639,029,390 - 39,044,502 (+)NCBIChiLan1.0ChiLan1.0
TMEM183A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2146,353,403 - 46,371,530 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1146,320,432 - 46,337,909 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01178,608,896 - 178,626,376 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11182,903,891 - 182,921,091 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1182,903,898 - 182,919,283 (+)Ensemblpanpan1.1panPan2
TMEM183A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.17166,640 - 180,680 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl7166,974 - 180,660 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha7222,297 - 236,341 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.07177,085 - 191,140 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl7177,096 - 191,163 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.17165,322 - 179,368 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.07274,851 - 288,898 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.07297,360 - 311,411 (-)NCBIUU_Cfam_GSD_1.0
Tmem183a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934472,332,097 - 72,343,737 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365671,568,098 - 1,578,392 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365671,566,773 - 1,578,420 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM183A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9113,713,032 - 113,725,847 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19113,713,046 - 113,726,645 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29125,173,389 - 125,185,839 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM183A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12526,329,213 - 26,346,850 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2526,328,841 - 26,346,750 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605527,104,474 - 27,122,123 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem183a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248077,807,543 - 7,822,825 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248077,807,543 - 7,822,789 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMEM183A
11 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1q31.1-42.11(chr1:187143981-224299417)x3 copy number gain See cases [RCV000051857] Chr1:187143981..224299417 [GRCh38]
Chr1:187113113..224487119 [GRCh37]
Chr1:185379736..222553742 [NCBI36]
Chr1:1q31.1-42.11
pathogenic
NM_138391.6(TMEM183A):c.1033C>T (p.Arg345Cys) single nucleotide variant Inborn genetic diseases [RCV003006919] Chr1:203022942 [GRCh38]
Chr1:202992070 [GRCh37]
Chr1:201258693 [NCBI36]
Chr1:1q32.1
uncertain significance|not provided
NM_138391.6(TMEM183A):c.708+1G>A single nucleotide variant Malignant tumor of prostate [RCV000149338] Chr1:203016141 [GRCh38]
Chr1:202985269 [GRCh37]
Chr1:1q32.1
uncertain significance
GRCh38/hg38 1q32.1(chr1:200144603-203112078)x1 copy number loss See cases [RCV000133625] Chr1:200144603..203112078 [GRCh38]
Chr1:200113731..203081206 [GRCh37]
Chr1:198380354..201347829 [NCBI36]
Chr1:1q32.1
pathogenic
GRCh37/hg19 1q31.3-42.13(chr1:197811907-228997888)x3 copy number gain See cases [RCV000240137] Chr1:197811907..228997888 [GRCh37]
Chr1:1q31.3-42.13
pathogenic
GRCh37/hg19 1q31.3-44(chr1:195483439-249213000)x3 copy number gain See cases [RCV000449172] Chr1:195483439..249213000 [GRCh37]
Chr1:1q31.3-44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
NM_138391.6(TMEM183A):c.103G>T (p.Gly35Cys) single nucleotide variant Inborn genetic diseases [RCV003240411] Chr1:203007568 [GRCh38]
Chr1:202976696 [GRCh37]
Chr1:1q32.1
uncertain significance
NM_138391.6(TMEM183A):c.401C>T (p.Pro134Leu) single nucleotide variant Inborn genetic diseases [RCV003260836] Chr1:203014922 [GRCh38]
Chr1:202984050 [GRCh37]
Chr1:1q32.1
uncertain significance
GRCh37/hg19 1q32.1(chr1:202789375-203058390)x3 copy number gain not provided [RCV000684688] Chr1:202789375..203058390 [GRCh37]
Chr1:1q32.1
uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1q25.3-41(chr1:185644663-221698833)x3 copy number gain not provided [RCV000749265] Chr1:185644663..221698833 [GRCh37]
Chr1:1q25.3-41
pathogenic
GRCh37/hg19 1q32.1(chr1:202542202-203108963)x3 copy number gain not provided [RCV000749330] Chr1:202542202..203108963 [GRCh37]
Chr1:1q32.1
benign
GRCh37/hg19 1q25.3-44(chr1:182388773-249111240)x3 copy number gain not provided [RCV000845852] Chr1:182388773..249111240 [GRCh37]
Chr1:1q25.3-44
pathogenic
GRCh37/hg19 1q31.3-32.2(chr1:194356425-210988710)x3 copy number gain not provided [RCV001249273] Chr1:194356425..210988710 [GRCh37]
Chr1:1q31.3-32.2
not provided
NC_000001.10:g.(?_130980840)_(248900000_?)dup duplication Gastrointestinal stromal tumor [RCV001300221]|Parathyroid carcinoma [RCV001341077] Chr1:130980840..248900000 [GRCh37]
Chr1:1q12-44
uncertain significance
NC_000001.10:g.(?_200522516)_(206945780_?)dup duplication Epilepsy, familial adult myoclonic, 5 [RCV003116306] Chr1:200522516..206945780 [GRCh37]
Chr1:1q32.1
uncertain significance
NC_000001.10:g.(?_200522516)_(208391267_?)dup duplication Hypokalemic periodic paralysis, type 1 [RCV003119239]|not provided [RCV003119240] Chr1:200522516..208391267 [GRCh37]
Chr1:1q32.1-32.2
uncertain significance|no classifications from unflagged records
GRCh37/hg19 1q31.3-44(chr1:197867914-249224684)x3 copy number gain See cases [RCV002287837] Chr1:197867914..249224684 [GRCh37]
Chr1:1q31.3-44
pathogenic
NM_138391.6(TMEM183A):c.14C>G (p.Pro5Arg) single nucleotide variant Inborn genetic diseases [RCV003279873] Chr1:203007479 [GRCh38]
Chr1:202976607 [GRCh37]
Chr1:1q32.1
uncertain significance
GRCh37/hg19 1q25.3-32.3(chr1:181453460-213107248)x3 copy number gain not provided [RCV002475637] Chr1:181453460..213107248 [GRCh37]
Chr1:1q25.3-32.3
pathogenic
NM_138391.6(TMEM183A):c.41A>G (p.Asp14Gly) single nucleotide variant Inborn genetic diseases [RCV002840670] Chr1:203007506 [GRCh38]
Chr1:202976634 [GRCh37]
Chr1:1q32.1
uncertain significance
NM_138391.6(TMEM183A):c.989G>A (p.Arg330Lys) single nucleotide variant Inborn genetic diseases [RCV002998272] Chr1:203022898 [GRCh38]
Chr1:202992026 [GRCh37]
Chr1:1q32.1
uncertain significance
NM_138391.6(TMEM183A):c.5C>G (p.Ala2Gly) single nucleotide variant Inborn genetic diseases [RCV002980716] Chr1:203007470 [GRCh38]
Chr1:202976598 [GRCh37]
Chr1:1q32.1
uncertain significance
NM_138391.6(TMEM183A):c.323A>T (p.His108Leu) single nucleotide variant Inborn genetic diseases [RCV002986591] Chr1:203008766 [GRCh38]
Chr1:202977894 [GRCh37]
Chr1:1q32.1
uncertain significance
NM_138391.6(TMEM183A):c.547T>A (p.Ser183Thr) single nucleotide variant Inborn genetic diseases [RCV002920443] Chr1:203015979 [GRCh38]
Chr1:202985107 [GRCh37]
Chr1:1q32.1
uncertain significance
NM_138391.6(TMEM183A):c.5C>T (p.Ala2Val) single nucleotide variant Inborn genetic diseases [RCV003215428] Chr1:203007470 [GRCh38]
Chr1:202976598 [GRCh37]
Chr1:1q32.1
uncertain significance
NM_138391.6(TMEM183A):c.35G>A (p.Arg12His) single nucleotide variant Inborn genetic diseases [RCV003340335] Chr1:203007500 [GRCh38]
Chr1:202976628 [GRCh37]
Chr1:1q32.1
uncertain significance
NM_138391.6(TMEM183A):c.322C>T (p.His108Tyr) single nucleotide variant Inborn genetic diseases [RCV003371669] Chr1:203008765 [GRCh38]
Chr1:202977893 [GRCh37]
Chr1:1q32.1
uncertain significance
NM_138391.6(TMEM183A):c.225C>T (p.Ala75=) single nucleotide variant not provided [RCV003414684] Chr1:203008668 [GRCh38]
Chr1:202977796 [GRCh37]
Chr1:1q32.1
likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1465
Count of miRNA genes:879
Interacting mature miRNAs:1026
Transcripts:ENST00000367242, ENST00000463015, ENST00000468449, ENST00000488097, ENST00000543891
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D1S1879E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371202,993,842 - 202,993,923UniSTSGRCh37
Build 361201,260,465 - 201,260,546RGDNCBI36
Celera1176,123,076 - 176,123,157RGD
Cytogenetic Map1q32.1UniSTS
HuRef1174,159,451 - 174,159,532UniSTS
SHGC-155248  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373149,700,613 - 149,700,913UniSTSGRCh37
GRCh37532,523,046 - 32,523,345UniSTSGRCh37
Build 363151,183,303 - 151,183,603RGDNCBI36
Celera3148,113,974 - 148,114,274RGD
Celera532,404,707 - 32,405,006UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map5p13.3UniSTS
HuRef3147,073,192 - 147,073,492UniSTS
HuRef532,489,876 - 32,490,175UniSTS
RH66529  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373149,700,046 - 149,700,250UniSTSGRCh37
Build 363151,182,736 - 151,182,940RGDNCBI36
Celera3148,113,407 - 148,113,611RGD
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map1q32.1UniSTS
HuRef3147,072,625 - 147,072,829UniSTS
GeneMap99-GB4 RH Map3546.34UniSTS
SHGC-76164  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371202,993,689 - 202,993,964UniSTSGRCh37
Build 361201,260,312 - 201,260,587RGDNCBI36
Celera1176,122,923 - 176,123,198RGD
Cytogenetic Map1q32.1UniSTS
HuRef1174,159,298 - 174,159,573UniSTS
TNG Radiation Hybrid Map19174.0UniSTS
GeneMap99-GB4 RH Map1672.28UniSTS
Whitehead-RH Map1826.8UniSTS
RH69448  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371202,993,718 - 202,993,940UniSTSGRCh37
Build 361201,260,341 - 201,260,563RGDNCBI36
Celera1176,122,952 - 176,123,174RGD
Cytogenetic Map1q32.1UniSTS
HuRef1174,159,327 - 174,159,549UniSTS
GeneMap99-GB4 RH Map1670.77UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2419 2170 1480 418 1885 261 3702 1127 3218 372 1455 1610 173 1 1201 2133 5 2
Low 20 821 246 206 66 204 655 1070 516 47 5 3 2 3 655 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_053085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001322955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001322956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001322957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001322958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001322959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001349862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_138391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_136530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_136531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_136532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_136533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_136534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_146285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_146286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_146287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_146288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_146289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC096632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF070537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK291426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK312985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL133052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC067775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC364887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000367242   ⟹   ENSP00000356211
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1203,007,374 - 203,024,848 (+)Ensembl
RefSeq Acc Id: ENST00000463015
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1203,008,740 - 203,015,572 (+)Ensembl
RefSeq Acc Id: ENST00000468449
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1203,007,774 - 203,017,919 (+)Ensembl
RefSeq Acc Id: ENST00000488097
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1203,015,840 - 203,020,801 (+)Ensembl
RefSeq Acc Id: ENST00000543891
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1203,007,403 - 203,016,094 (+)Ensembl
RefSeq Acc Id: NM_001322955   ⟹   NP_001309884
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381203,007,374 - 203,024,848 (+)NCBI
CHM1_11204,398,796 - 204,416,278 (+)NCBI
T2T-CHM13v2.01202,270,081 - 202,287,572 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001322956   ⟹   NP_001309885
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381203,007,374 - 203,024,848 (+)NCBI
CHM1_11204,398,796 - 204,416,278 (+)NCBI
T2T-CHM13v2.01202,270,081 - 202,287,572 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001322957   ⟹   NP_001309886
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381203,007,374 - 203,024,848 (+)NCBI
CHM1_11204,398,796 - 204,416,278 (+)NCBI
T2T-CHM13v2.01202,270,081 - 202,287,572 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001322958   ⟹   NP_001309887
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381203,007,374 - 203,024,848 (+)NCBI
CHM1_11204,398,796 - 204,416,278 (+)NCBI
T2T-CHM13v2.01202,270,081 - 202,287,572 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001322959   ⟹   NP_001309888
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381203,007,374 - 203,024,848 (+)NCBI
CHM1_11204,398,796 - 204,416,278 (+)NCBI
T2T-CHM13v2.01202,270,081 - 202,287,572 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349859   ⟹   NP_001336788
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381203,007,631 - 203,024,848 (+)NCBI
T2T-CHM13v2.01202,270,338 - 202,287,572 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001349862   ⟹   NP_001336791
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381203,007,631 - 203,024,848 (+)NCBI
T2T-CHM13v2.01202,270,338 - 202,287,572 (+)NCBI
Sequence:
RefSeq Acc Id: NM_138391   ⟹   NP_612400
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381203,007,374 - 203,024,848 (+)NCBI
GRCh371202,976,520 - 202,993,976 (+)NCBI
Build 361201,243,159 - 201,259,291 (+)NCBI Archive
Celera1176,105,772 - 176,122,430 (+)RGD
HuRef1174,142,136 - 174,158,805 (+)ENTREZGENE
CHM1_11204,398,835 - 204,415,499 (+)NCBI
T2T-CHM13v2.01202,270,081 - 202,287,572 (+)NCBI
Sequence:
RefSeq Acc Id: NR_136530
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381203,007,374 - 203,024,848 (+)NCBI
CHM1_11204,398,796 - 204,416,278 (+)NCBI
T2T-CHM13v2.01202,270,081 - 202,287,572 (+)NCBI
Sequence:
RefSeq Acc Id: NR_136531
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381203,007,374 - 203,024,848 (+)NCBI
CHM1_11204,398,796 - 204,416,278 (+)NCBI
T2T-CHM13v2.01202,270,081 - 202,287,572 (+)NCBI
Sequence:
RefSeq Acc Id: NR_136532
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381203,007,374 - 203,024,848 (+)NCBI
CHM1_11204,398,796 - 204,416,278 (+)NCBI
T2T-CHM13v2.01202,270,081 - 202,287,572 (+)NCBI
Sequence:
RefSeq Acc Id: NR_136533
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381203,007,374 - 203,024,848 (+)NCBI
CHM1_11204,398,796 - 204,416,278 (+)NCBI
T2T-CHM13v2.01202,270,081 - 202,287,572 (+)NCBI
Sequence:
RefSeq Acc Id: NR_136534
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381203,007,374 - 203,024,848 (+)NCBI
CHM1_11204,398,796 - 204,416,278 (+)NCBI
T2T-CHM13v2.01202,270,081 - 202,287,572 (+)NCBI
Sequence:
RefSeq Acc Id: NR_146285
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381203,007,374 - 203,024,848 (+)NCBI
T2T-CHM13v2.01202,270,081 - 202,287,572 (+)NCBI
Sequence:
RefSeq Acc Id: NR_146286
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381203,007,374 - 203,024,848 (+)NCBI
T2T-CHM13v2.01202,270,081 - 202,287,572 (+)NCBI
Sequence:
RefSeq Acc Id: NR_146287
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381203,007,374 - 203,024,848 (+)NCBI
T2T-CHM13v2.01202,270,081 - 202,287,572 (+)NCBI
Sequence:
RefSeq Acc Id: NR_146288
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381203,007,374 - 203,024,848 (+)NCBI
T2T-CHM13v2.01202,270,081 - 202,287,572 (+)NCBI
Sequence:
RefSeq Acc Id: NR_146289
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381203,007,631 - 203,024,848 (+)NCBI
T2T-CHM13v2.01202,270,338 - 202,287,572 (+)NCBI
Sequence:
RefSeq Acc Id: NP_612400   ⟸   NM_138391
- Peptide Label: isoform 1
- UniProtKB: Q1AE97 (UniProtKB/Swiss-Prot),   Q1AE95 (UniProtKB/Swiss-Prot),   Q6NW15 (UniProtKB/Swiss-Prot),   A8K5W1 (UniProtKB/Swiss-Prot),   Q96E06 (UniProtKB/Swiss-Prot),   Q8IXX5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001309886   ⟸   NM_001322957
- Peptide Label: isoform 4
- Sequence:
RefSeq Acc Id: NP_001309885   ⟸   NM_001322956
- Peptide Label: isoform 3
- UniProtKB: Q1AE97 (UniProtKB/Swiss-Prot),   Q1AE95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001309884   ⟸   NM_001322955
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: NP_001309887   ⟸   NM_001322958
- Peptide Label: isoform 5
- UniProtKB: Q1AE97 (UniProtKB/Swiss-Prot),   Q1AE95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001309888   ⟸   NM_001322959
- Peptide Label: isoform 6
- UniProtKB: Q1AE97 (UniProtKB/Swiss-Prot),   Q1AE95 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001336788   ⟸   NM_001349859
- Peptide Label: isoform 7
- Sequence:
RefSeq Acc Id: NP_001336791   ⟸   NM_001349862
- Peptide Label: isoform 8
- UniProtKB: B4DLZ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000356211   ⟸   ENST00000367242

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8IXX5-F1-model_v2 AlphaFold Q8IXX5 1-376 view protein structure

Promoters
RGD ID:6787011
Promoter ID:HG_KWN:6871
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000100129,   OTTHUMT00000100130,   OTTHUMT00000101323,   UC001GYV.1,   UC001GYW.1,   UC001GYX.1,   UC009XAI.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361201,242,186 - 201,243,072 (+)MPROMDB
RGD ID:6858612
Promoter ID:EPDNEW_H2471
Type:initiation region
Name:TMEM183A_1
Description:transmembrane protein 183A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381203,007,374 - 203,007,434EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:20173 AgrOrtholog
COSMIC TMEM183A COSMIC
Ensembl Genes ENSG00000163444 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000367242 ENTREZGENE
  ENST00000367242.4 UniProtKB/Swiss-Prot
GTEx ENSG00000163444 GTEx
HGNC ID HGNC:20173 ENTREZGENE
Human Proteome Map TMEM183A Human Proteome Map
InterPro F-box-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TMEM183 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:92703 UniProtKB/Swiss-Prot
NCBI Gene 92703 ENTREZGENE
PANTHER PTHR20988 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 183A-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA162406090 PharmGKB
Superfamily-SCOP SSF81383 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A8K5W1 ENTREZGENE
  B4DLZ3 ENTREZGENE, UniProtKB/TrEMBL
  Q1AE95 ENTREZGENE
  Q1AE97 ENTREZGENE
  Q6NW15 ENTREZGENE
  Q8IXX5 ENTREZGENE
  Q96E06 ENTREZGENE
  T183A_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary A8K5W1 UniProtKB/Swiss-Prot
  Q6NW15 UniProtKB/Swiss-Prot
  Q96E06 UniProtKB/Swiss-Prot