Etv5 (ETS variant transcription factor 5) - Rat Genome Database

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Gene: Etv5 (ETS variant transcription factor 5) Rattus norvegicus
Analyze
Symbol: Etv5
Name: ETS variant transcription factor 5
RGD ID: 1309590
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in male germ-line stem cell asymmetric division; positive regulation of glial cell proliferation; and positive regulation of neuron differentiation. Predicted to be located in plasma membrane and synapse. Predicted to be active in nucleus. Orthologous to human ETV5 (ETS variant transcription factor 5); INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ETS translocation variant 5; ets variant 5; ets variant gene 5; ets variant gene 5 (ets-related molecule); LOC303828
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81192,113,171 - 92,170,758 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1192,113,224 - 92,170,767 (+)EnsemblGRCr8
mRatBN7.21178,608,618 - 78,666,221 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1178,608,710 - 78,666,215 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1187,350,832 - 87,401,331 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01180,004,498 - 80,054,995 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01179,065,172 - 79,115,671 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01182,194,657 - 82,252,145 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1182,194,657 - 82,252,139 (+)Ensemblrn6Rnor6.0
Rnor_5.01185,281,798 - 85,339,815 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41180,846,286 - 80,904,013 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1177,472,094 - 77,529,607 (+)NCBICelera
RGSC_v3.11180,893,004 - 80,960,441 (+)NCBI
Cytogenetic Map11q23NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
1-nitropyrene  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
2-methylcholine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-vinylcyclohexene dioxide  (ISO)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
astemizole  (EXP)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP,ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fluoranthene  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
inulin  (ISO)
iron dichloride  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (EXP,ISO)
methoxychlor  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
mibolerone  (ISO)
microcystin-LR  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (ISO)
nickel subsulfide  (EXP)
ochratoxin A  (EXP)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
PD 0325901  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (ISO)
Phenylamil  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
rofecoxib  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP,ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
tetraphene  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triphenylstannane  (EXP,ISO)
triptonide  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)
plasma membrane  (IEA)
synapse  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. The role of the Ets domain transcription factor Erm in modulating differentiation of neural crest stem cells. Paratore C, etal., Dev Biol. 2002 Oct 1;250(1):168-80.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. Identification of glial cell line-derived neurotrophic factor-regulated genes important for spermatogonial stem cell self-renewal in the rat. Schmidt JA, etal., Biol Reprod. 2009 Jul;81(1):56-66. Epub 2009 Apr 1.
Additional References at PubMed
PMID:12871699   PMID:15466854   PMID:15857832   PMID:16394217   PMID:17785180   PMID:19443906   PMID:21779089   PMID:24089499   PMID:24710089   PMID:27909004   PMID:33883060   PMID:37876309  


Genomics

Comparative Map Data
Etv5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81192,113,171 - 92,170,758 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1192,113,224 - 92,170,767 (+)EnsemblGRCr8
mRatBN7.21178,608,618 - 78,666,221 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1178,608,710 - 78,666,215 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1187,350,832 - 87,401,331 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01180,004,498 - 80,054,995 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01179,065,172 - 79,115,671 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01182,194,657 - 82,252,145 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1182,194,657 - 82,252,139 (+)Ensemblrn6Rnor6.0
Rnor_5.01185,281,798 - 85,339,815 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41180,846,286 - 80,904,013 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1177,472,094 - 77,529,607 (+)NCBICelera
RGSC_v3.11180,893,004 - 80,960,441 (+)NCBI
Cytogenetic Map11q23NCBI
ETV5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383186,046,314 - 186,109,089 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3186,046,314 - 186,110,318 (-)Ensemblhg38GRCh38
GRCh373185,764,103 - 185,826,878 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363187,246,804 - 187,309,571 (-)NCBIBuild 36Build 36hg18NCBI36
Build 343187,246,811 - 187,309,579NCBI
Celera3184,202,650 - 184,264,752 (-)NCBICelera
Cytogenetic Map3q27.2NCBI
HuRef3183,174,795 - 183,237,512 (-)NCBIHuRef
CHM1_13185,727,121 - 185,789,898 (-)NCBICHM1_1
T2T-CHM13v2.03188,862,123 - 188,924,868 (-)NCBIT2T-CHM13v2.0
Etv5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391622,200,063 - 22,258,320 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1622,200,059 - 22,258,469 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381622,381,313 - 22,439,570 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1622,381,309 - 22,439,719 (-)Ensemblmm10GRCm38
MGSCv371622,381,386 - 22,439,643 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361622,296,569 - 22,354,826 (-)NCBIMGSCv36mm8
Celera1622,949,079 - 23,007,345 (-)NCBICelera
Cytogenetic Map16B1NCBI
cM Map1613.3NCBI
Etv5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542021,509,248 - 21,576,599 (+)Ensembl
ChiLan1.0NW_00495542021,503,820 - 21,576,539 (+)NCBIChiLan1.0ChiLan1.0
ETV5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22183,917,053 - 183,980,350 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13183,921,772 - 183,985,060 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03183,076,677 - 183,139,886 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13191,545,915 - 191,608,491 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3191,545,915 - 191,606,550 (-)EnsemblpanPan2panpan1.1
ETV5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13418,729,684 - 18,791,667 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3418,731,943 - 18,789,386 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3422,815,410 - 22,877,423 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03418,640,268 - 18,702,295 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3418,640,272 - 18,699,537 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13418,666,771 - 18,729,017 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03418,671,525 - 18,733,556 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03418,900,890 - 18,960,409 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Etv5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602117,703,147 - 117,762,282 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365783,794,982 - 3,854,140 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365783,795,000 - 3,854,269 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ETV5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13123,873,350 - 123,930,200 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113123,873,346 - 123,930,292 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ETV5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1153,313,331 - 3,376,024 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl153,316,585 - 3,373,708 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606312,066,292 - 12,128,849 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Etv5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473070,631,637 - 70,699,863 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473070,631,654 - 70,699,768 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Etv5
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v147,044,760 - 7,102,932 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:238
Count of miRNA genes:181
Interacting mature miRNAs:200
Transcripts:ENSRNOT00000002445
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)117330848796070872Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)117961851999753367Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)119046178196556255Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)115893182292356038Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)118295102896351019Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat

Markers in Region
RH136666  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2254,874,221 - 54,874,421 (-)MAPPERmRatBN7.2
mRatBN7.21178,664,446 - 78,664,649 (+)MAPPERmRatBN7.2
Rnor_6.01182,250,371 - 82,250,573NCBIRnor6.0
Rnor_6.02235,398,958 - 235,399,157NCBIRnor6.0
Rnor_5.01185,338,041 - 85,338,243UniSTSRnor5.0
Rnor_5.0274,563,803 - 74,564,002UniSTSRnor5.0
RGSC_v3.4255,023,190 - 55,023,389UniSTSRGSC3.4
RGSC_v3.41180,902,245 - 80,902,447UniSTSRGSC3.4
Celera1177,527,839 - 77,528,041UniSTS
Celera250,507,834 - 50,508,033UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map2q16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 91 59 6 355 191 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000002445   ⟹   ENSRNOP00000002445
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1192,113,224 - 92,170,767 (+)Ensembl
mRatBN7.2 Ensembl1178,608,710 - 78,666,215 (+)Ensembl
Rnor_6.0 Ensembl1182,194,657 - 82,252,139 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117777   ⟹   ENSRNOP00000096495
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1192,113,224 - 92,170,767 (+)Ensembl
mRatBN7.2 Ensembl1178,608,710 - 78,666,215 (+)Ensembl
RefSeq Acc Id: NM_001107082   ⟹   NP_001100552
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81192,113,263 - 92,170,756 (+)NCBI
mRatBN7.21178,608,710 - 78,666,215 (+)NCBI
Rnor_6.01182,194,657 - 82,252,139 (+)NCBI
Rnor_5.01185,281,798 - 85,339,815 (+)NCBI
RGSC_v3.41180,846,286 - 80,904,013 (+)RGD
Celera1177,472,094 - 77,529,607 (+)RGD
Sequence:
RefSeq Acc Id: XM_039088288   ⟹   XP_038944216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81192,113,171 - 92,170,758 (+)NCBI
mRatBN7.21178,608,618 - 78,666,221 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001100552 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944216 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL78049 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000002445
  ENSRNOP00000002445.4
  ENSRNOP00000096495
  ENSRNOP00000096495.1
RefSeq Acc Id: NP_001100552   ⟸   NM_001107082
- UniProtKB: D4AC56 (UniProtKB/TrEMBL),   A6JS58 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002445   ⟸   ENSRNOT00000002445
RefSeq Acc Id: XP_038944216   ⟸   XM_039088288
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AQT3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000096495   ⟸   ENSRNOT00000117777
Protein Domains
ETS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AC56-F1-model_v2 AlphaFold D4AC56 1-510 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698254
Promoter ID:EPDNEW_R8779
Type:multiple initiation site
Name:Etv5_1
Description:ets variant 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01182,194,615 - 82,194,675EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309590 AgrOrtholog
BioCyc Gene G2FUF-20804 BioCyc
Ensembl Genes ENSRNOG00000001785 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002445 ENTREZGENE
  ENSRNOT00000002445.7 UniProtKB/TrEMBL
  ENSRNOT00000117777 ENTREZGENE
  ENSRNOT00000117777.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro Ets UniProtKB/TrEMBL
  ETS_fam UniProtKB/TrEMBL
  ETS_PEA3_N UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report rno:303828 UniProtKB/TrEMBL
NCBI Gene 303828 ENTREZGENE
PANTHER ETS TRANSLOCATION VARIANT 5 UniProtKB/TrEMBL
  PTHR11849 UniProtKB/TrEMBL
Pfam Ets UniProtKB/TrEMBL
  ETS_PEA3_N UniProtKB/TrEMBL
PharmGKB ETV5 RGD
PhenoGen Etv5 PhenoGen
PRINTS ETSDOMAIN UniProtKB/TrEMBL
PROSITE ETS_DOMAIN_1 UniProtKB/TrEMBL
  ETS_DOMAIN_2 UniProtKB/TrEMBL
  ETS_DOMAIN_3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001785 RatGTEx
SMART ETS UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt A0A8I6AQT3 ENTREZGENE, UniProtKB/TrEMBL
  A6JS58 ENTREZGENE, UniProtKB/TrEMBL
  D4AC56 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-20 Etv5  ETS variant transcription factor 5  Etv5  ets variant 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-23 Etv5  ets variant 5  Etv5  ets variant gene 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Etv5  ets variant gene 5  Etv5_predicted  ets variant gene 5 (ets-related molecule) (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Etv5_predicted  ets variant gene 5 (ets-related molecule) (predicted)      Symbol and Name status set to approved 70820 APPROVED