Rnf41 (ring finger protein 41) - Rat Genome Database

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Gene: Rnf41 (ring finger protein 41) Rattus norvegicus
Analyze
Symbol: Rnf41
Name: ring finger protein 41
RGD ID: 1309557
Description: Predicted to enable several functions, including identical protein binding activity; signaling receptor binding activity; and small GTPase binding activity. Predicted to be involved in several processes, including extrinsic apoptotic signaling pathway; positive regulation of metabolic process; and protein autoubiquitination. Predicted to act upstream of or within several processes, including negative regulation of mitophagy; regulation of hemopoiesis; and regulation of intracellular signal transduction. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in endoplasmic reticulum tubular network. Human ortholog(s) of this gene implicated in congenital heart disease. Orthologous to human RNF41 (ring finger protein 41); PARTICIPATES IN endocytosis pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E3 ubiquitin-protein ligase NRDP1; LOC362814
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,422,651 - 1,461,700 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl71,426,408 - 1,448,164 (+)EnsemblGRCr8
mRatBN7.27838,160 - 876,869 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7838,203 - 865,511 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx73,600,148 - 3,625,470 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.075,476,129 - 5,501,454 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.075,773,774 - 5,799,206 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.072,827,242 - 2,854,230 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl72,827,247 - 2,852,681 (+)Ensemblrn6Rnor6.0
Rnor_5.072,805,710 - 2,846,908 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.471,704,204 - 1,725,892 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7715,443 - 737,104 (+)NCBICelera
RGSC_v3.171,704,203 - 1,725,892 (+)NCBI
Cytogenetic Map7q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Cardiac-specific overexpression of E3 ligase Nrdp1 increases ischemia and reperfusion-induced cardiac injury. Zhang Y, etal., Basic Res Cardiol. 2011 May;106(3):371-83. doi: 10.1007/s00395-011-0157-0. Epub 2011 Feb 11.
5. Association between RNF41 gene c.-206 T > A genetic polymorphism and risk of congenital heart diseases in the Chinese Mongolian population. Zhang Y, etal., Genet Mol Res. 2016 Jun 17;15(2). doi: 10.4238/gmr.15028089.
Additional References at PubMed
PMID:12477932   PMID:14765125   PMID:17145873   PMID:18495327   PMID:18541373   PMID:22493164   PMID:24056301   PMID:24105792   PMID:24949970   PMID:25416956   PMID:25896295   PMID:27353365  
PMID:27428330   PMID:30720051   PMID:31515488   PMID:32200526  


Genomics

Comparative Map Data
Rnf41
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,422,651 - 1,461,700 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl71,426,408 - 1,448,164 (+)EnsemblGRCr8
mRatBN7.27838,160 - 876,869 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7838,203 - 865,511 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx73,600,148 - 3,625,470 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.075,476,129 - 5,501,454 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.075,773,774 - 5,799,206 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.072,827,242 - 2,854,230 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl72,827,247 - 2,852,681 (+)Ensemblrn6Rnor6.0
Rnor_5.072,805,710 - 2,846,908 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.471,704,204 - 1,725,892 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7715,443 - 737,104 (+)NCBICelera
RGSC_v3.171,704,203 - 1,725,892 (+)NCBI
Cytogenetic Map7q11NCBI
RNF41
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381256,202,179 - 56,221,969 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1256,202,179 - 56,224,275 (-)Ensemblhg38GRCh38
GRCh371256,595,963 - 56,615,753 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361254,884,552 - 54,902,002 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1256,250,761 - 56,268,658 (-)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1253,635,511 - 53,654,742 (-)NCBIHuRef
CHM1_11256,563,663 - 56,583,136 (-)NCBICHM1_1
T2T-CHM13v2.01256,169,789 - 56,189,589 (-)NCBIT2T-CHM13v2.0
Rnf41
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,247,485 - 128,277,310 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10128,247,526 - 128,277,310 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3810128,411,616 - 128,441,441 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,411,657 - 128,441,441 (+)Ensemblmm10GRCm38
MGSCv3710127,848,672 - 127,878,497 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3610127,814,606 - 127,844,389 (+)NCBIMGSCv36mm8
Celera10130,799,930 - 130,830,133 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1076.55NCBI
Rnf41
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554583,799,450 - 3,833,263 (-)Ensembl
ChiLan1.0NW_0049554583,799,450 - 3,833,269 (-)NCBIChiLan1.0ChiLan1.0
RNF41
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21038,110,057 - 38,127,573 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11238,106,825 - 38,127,001 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01232,693,349 - 32,710,866 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11232,944,791 - 32,962,584 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1232,944,814 - 32,962,584 (+)EnsemblpanPan2panpan1.1
RNF41
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.110512,650 - 521,293 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl10514,635 - 542,395 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha10575,411 - 608,404 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.010520,593 - 553,626 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl10522,281 - 553,589 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.110498,024 - 531,095 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.010741,090 - 774,071 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.010865,156 - 898,129 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rnf41
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494558,239,591 - 58,266,609 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936646605,302 - 631,022 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936646605,302 - 630,645 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF41
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,596,306 - 21,624,569 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1521,595,703 - 21,624,589 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2523,043,346 - 23,071,863 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF41
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,151,968 - 52,175,760 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1152,141,715 - 52,175,728 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037193,810,784 - 193,840,955 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf41
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480211,781,725 - 11,810,402 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462480211,781,748 - 11,811,412 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rnf41
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11155,879,892 - 155,905,657 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rnf41
212 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:132
Count of miRNA genes:94
Interacting mature miRNAs:112
Transcripts:ENSRNOT00000029778
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat

Markers in Region
RH129450  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27848,222 - 848,392 (+)MAPPERmRatBN7.2
mRatBN7.28121,339,344 - 121,339,526 (+)MAPPERmRatBN7.2
Rnor_6.08130,313,189 - 130,313,370NCBIRnor6.0
Rnor_6.072,837,279 - 2,837,448NCBIRnor6.0
Rnor_5.072,815,743 - 2,815,912UniSTSRnor5.0
Rnor_5.08129,496,624 - 129,496,805UniSTSRnor5.0
RGSC_v3.471,710,492 - 1,710,661UniSTSRGSC3.4
Celera7721,718 - 721,887UniSTS
Celera8120,474,237 - 120,474,418UniSTS
Cytogenetic Map7q11UniSTS
AV071699  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28121,339,425 - 121,339,514 (+)MAPPERmRatBN7.2
mRatBN7.27848,291 - 848,380 (+)MAPPERmRatBN7.2
Rnor_6.072,837,348 - 2,837,436NCBIRnor6.0
Rnor_6.08130,313,270 - 130,313,358NCBIRnor6.0
Rnor_5.072,815,812 - 2,815,900UniSTSRnor5.0
Rnor_5.08129,496,705 - 129,496,793UniSTSRnor5.0
RGSC_v3.471,710,561 - 1,710,649UniSTSRGSC3.4
Celera7721,787 - 721,875UniSTS
Celera8120,474,318 - 120,474,406UniSTS
Cytogenetic Map7q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001012195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC083614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000029778   ⟹   ENSRNOP00000034376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl71,426,408 - 1,448,131 (+)Ensembl
mRatBN7.2 Ensembl7838,203 - 865,511 (+)Ensembl
Rnor_6.0 Ensembl72,831,004 - 2,852,681 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000090689   ⟹   ENSRNOP00000073126
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7840,026 - 865,511 (+)Ensembl
Rnor_6.0 Ensembl72,827,247 - 2,851,739 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000138793   ⟹   ENSRNOP00000104560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl71,426,408 - 1,448,131 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000141904   ⟹   ENSRNOP00000105032
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl71,426,489 - 1,448,164 (+)Ensembl
RefSeq Acc Id: NM_001012195   ⟹   NP_001012195
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,426,489 - 1,448,164 (+)NCBI
mRatBN7.27841,947 - 863,623 (+)NCBI
Rnor_6.072,831,004 - 2,852,681 (+)NCBI
Rnor_5.072,805,710 - 2,846,908 (+)NCBI
RGSC_v3.471,704,204 - 1,725,892 (+)RGD
Celera7715,443 - 737,104 (+)RGD
Sequence:
RefSeq Acc Id: NM_001401067   ⟹   NP_001387996
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,422,754 - 1,448,164 (+)NCBI
mRatBN7.27838,212 - 863,623 (+)NCBI
RefSeq Acc Id: NM_001401068   ⟹   NP_001387997
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,422,754 - 1,448,164 (+)NCBI
mRatBN7.27838,212 - 863,623 (+)NCBI
RefSeq Acc Id: NM_001401069   ⟹   NP_001387998
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,422,754 - 1,448,164 (+)NCBI
mRatBN7.27838,212 - 863,623 (+)NCBI
RefSeq Acc Id: XM_006240776   ⟹   XP_006240838
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,422,703 - 1,448,166 (+)NCBI
mRatBN7.27838,160 - 866,377 (+)NCBI
Rnor_6.072,827,242 - 2,854,230 (+)NCBI
Rnor_5.072,805,710 - 2,846,908 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039079372   ⟹   XP_038935300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,422,727 - 1,448,166 (+)NCBI
mRatBN7.27838,433 - 866,377 (+)NCBI
RefSeq Acc Id: XM_039079373   ⟹   XP_038935301
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,422,727 - 1,461,700 (+)NCBI
mRatBN7.27838,187 - 876,869 (+)NCBI
RefSeq Acc Id: XM_039079375   ⟹   XP_038935303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,422,651 - 1,448,166 (+)NCBI
mRatBN7.27838,186 - 866,377 (+)NCBI
RefSeq Acc Id: XM_039079376   ⟹   XP_038935304
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,438,095 - 1,448,166 (+)NCBI
mRatBN7.27853,554 - 866,377 (+)NCBI
RefSeq Acc Id: XM_039079377   ⟹   XP_038935305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,444,647 - 1,448,166 (+)NCBI
mRatBN7.27860,097 - 866,377 (+)NCBI
RefSeq Acc Id: XM_063263703   ⟹   XP_063119773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,422,739 - 1,448,166 (+)NCBI
RefSeq Acc Id: XM_063263704   ⟹   XP_063119774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,422,736 - 1,461,700 (+)NCBI
RefSeq Acc Id: XM_063263705   ⟹   XP_063119775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,422,706 - 1,461,700 (+)NCBI
RefSeq Acc Id: XM_063263706   ⟹   XP_063119776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,422,703 - 1,461,700 (+)NCBI
RefSeq Acc Id: XM_063263707   ⟹   XP_063119777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,422,736 - 1,448,166 (+)NCBI
RefSeq Acc Id: XM_063263708   ⟹   XP_063119778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,422,706 - 1,448,166 (+)NCBI
RefSeq Acc Id: XM_063263709   ⟹   XP_063119779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,422,736 - 1,461,700 (+)NCBI
RefSeq Acc Id: XM_063263710   ⟹   XP_063119780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,422,736 - 1,461,700 (+)NCBI
RefSeq Acc Id: NP_001012195   ⟸   NM_001012195
- Peptide Label: isoform 2
- UniProtKB: A0A8J8XH25 (UniProtKB/TrEMBL),   A0A0G2K4P8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240838   ⟸   XM_006240776
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K4P8 (UniProtKB/TrEMBL),   Q5XIR0 (UniProtKB/TrEMBL),   G3V930 (UniProtKB/TrEMBL),   A6KSD2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073126   ⟸   ENSRNOT00000090689
Ensembl Acc Id: ENSRNOP00000034376   ⟸   ENSRNOT00000029778
RefSeq Acc Id: XP_038935303   ⟸   XM_039079375
- Peptide Label: isoform X2
- UniProtKB: A0A8J8XH25 (UniProtKB/TrEMBL),   A0A0G2K4P8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935301   ⟸   XM_039079373
- Peptide Label: isoform X1
- UniProtKB: Q5XIR0 (UniProtKB/TrEMBL),   G3V930 (UniProtKB/TrEMBL),   A6KSD2 (UniProtKB/TrEMBL),   A0A0G2K4P8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935300   ⟸   XM_039079372
- Peptide Label: isoform X1
- UniProtKB: Q5XIR0 (UniProtKB/TrEMBL),   G3V930 (UniProtKB/TrEMBL),   A6KSD2 (UniProtKB/TrEMBL),   A0A0G2K4P8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935304   ⟸   XM_039079376
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038935305   ⟸   XM_039079377
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001387997   ⟸   NM_001401068
- Peptide Label: isoform 1
- UniProtKB: Q5XIR0 (UniProtKB/TrEMBL),   G3V930 (UniProtKB/TrEMBL),   A6KSD2 (UniProtKB/TrEMBL),   A0A0G2K4P8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001387996   ⟸   NM_001401067
- Peptide Label: isoform 1
- UniProtKB: Q5XIR0 (UniProtKB/TrEMBL),   G3V930 (UniProtKB/TrEMBL),   A6KSD2 (UniProtKB/TrEMBL),   A0A0G2K4P8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001387998   ⟸   NM_001401069
- Peptide Label: isoform 1
- UniProtKB: Q5XIR0 (UniProtKB/TrEMBL),   G3V930 (UniProtKB/TrEMBL),   A6KSD2 (UniProtKB/TrEMBL),   A0A0G2K4P8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119776   ⟸   XM_063263706
- Peptide Label: isoform X1
- UniProtKB: A6KSD2 (UniProtKB/TrEMBL),   G3V930 (UniProtKB/TrEMBL),   Q5XIR0 (UniProtKB/TrEMBL),   A0A0G2K4P8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119775   ⟸   XM_063263705
- Peptide Label: isoform X1
- UniProtKB: A6KSD2 (UniProtKB/TrEMBL),   G3V930 (UniProtKB/TrEMBL),   Q5XIR0 (UniProtKB/TrEMBL),   A0A0G2K4P8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119778   ⟸   XM_063263708
- Peptide Label: isoform X2
- UniProtKB: A0A8J8XH25 (UniProtKB/TrEMBL),   A0A0G2K4P8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119779   ⟸   XM_063263709
- Peptide Label: isoform X2
- UniProtKB: A0A8J8XH25 (UniProtKB/TrEMBL),   A0A0G2K4P8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119774   ⟸   XM_063263704
- Peptide Label: isoform X1
- UniProtKB: A6KSD2 (UniProtKB/TrEMBL),   G3V930 (UniProtKB/TrEMBL),   Q5XIR0 (UniProtKB/TrEMBL),   A0A0G2K4P8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119780   ⟸   XM_063263710
- Peptide Label: isoform X2
- UniProtKB: A0A8J8XH25 (UniProtKB/TrEMBL),   A0A0G2K4P8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119777   ⟸   XM_063263707
- Peptide Label: isoform X2
- UniProtKB: A0A8J8XH25 (UniProtKB/TrEMBL),   A0A0G2K4P8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119773   ⟸   XM_063263703
- Peptide Label: isoform X1
- UniProtKB: A6KSD2 (UniProtKB/TrEMBL),   G3V930 (UniProtKB/TrEMBL),   Q5XIR0 (UniProtKB/TrEMBL),   A0A0G2K4P8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000105032   ⟸   ENSRNOT00000141904
Ensembl Acc Id: ENSRNOP00000104560   ⟸   ENSRNOT00000138793
Protein Domains
E3 ubiquitin-protein ligase NRDP1   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K4P8-F1-model_v2 AlphaFold A0A0G2K4P8 1-317 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694939
Promoter ID:EPDNEW_R5462
Type:initiation region
Name:Rnf41_1
Description:ring finger protein 41
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.072,827,316 - 2,827,376EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309557 AgrOrtholog
BioCyc Gene G2FUF-35369 BioCyc
Ensembl Genes ENSRNOG00000023456 Ensembl
  ENSRNOG00000086706 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000029778 ENTREZGENE
  ENSRNOT00000029778.6 UniProtKB/TrEMBL
  ENSRNOT00000138793.1 UniProtKB/TrEMBL
  ENSRNOT00000141904 ENTREZGENE
  ENSRNOT00000141904.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7133774 IMAGE-MGC_LOAD
InterPro NRDP1_C UniProtKB/TrEMBL
  USP8_interacting UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
MGC_CLONE MGC:94383 IMAGE-MGC_LOAD
NCBI Gene 362814 ENTREZGENE
PANTHER RING-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  TNF RECEPTOR ASSOCIATED FACTOR UniProtKB/TrEMBL
Pfam USP8_interact UniProtKB/TrEMBL
  zf-C3HC4_2 UniProtKB/TrEMBL
PhenoGen Rnf41 PhenoGen
PROSITE ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000023456 RatGTEx
  ENSRNOG00000086706 RatGTEx
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF160088 UniProtKB/TrEMBL
  TRAF domain-like UniProtKB/TrEMBL
UniProt A0A0G2K4P8 ENTREZGENE
  A0A8J8XH25 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LV47_RAT UniProtKB/TrEMBL
  A6KSD2 ENTREZGENE, UniProtKB/TrEMBL
  G3V930 ENTREZGENE, UniProtKB/TrEMBL
  Q5XIR0 ENTREZGENE
UniProt Secondary Q5XIR0 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Rnf41  ring finger protein 41  Rnf41_predicted  ring finger protein 41 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Rnf41_predicted  ring finger protein 41 (predicted)      Symbol and Name status set to approved 70820 APPROVED