Aldh1l2 (aldehyde dehydrogenase 1 family, member L2) - Rat Genome Database

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Gene: Aldh1l2 (aldehyde dehydrogenase 1 family, member L2) Rattus norvegicus
Analyze
Symbol: Aldh1l2
Name: aldehyde dehydrogenase 1 family, member L2
RGD ID: 1309458
Description: Predicted to enable aldehyde dehydrogenase (NAD+) activity and formyltetrahydrofolate dehydrogenase activity. Predicted to be involved in 10-formyltetrahydrofolate catabolic process; NADPH regeneration; and folic acid metabolic process. Predicted to act upstream of or within with a positive effect on fatty acid beta-oxidation. Predicted to be located in mitochondrion. Orthologous to human ALDH1L2 (aldehyde dehydrogenase 1 family member L2); PARTICIPATES IN folate mediated one-carbon metabolic pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC299699; mitochondrial 10-formyltetrahydrofolate dehydrogenase; probable 10-formyltetrahydrofolate dehydrogenase ALDH1L2; RGD1309458; similar to RIKEN cDNA D330038I09
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8722,141,872 - 22,193,403 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl722,141,842 - 22,193,398 (+)EnsemblGRCr8
mRatBN7.2720,254,246 - 20,305,793 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl720,254,233 - 20,305,776 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx722,226,671 - 22,277,861 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0724,389,426 - 24,440,621 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0724,166,438 - 24,217,632 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0726,375,866 - 26,425,838 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl726,375,866 - 26,425,108 (+)Ensemblrn6Rnor6.0
Rnor_5.0726,506,321 - 26,555,206 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4722,398,067 - 22,450,381 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera717,456,470 - 17,507,229 (+)NCBICelera
RGSC_v3.1722,418,181 - 22,469,924 (+)NCBI
Cytogenetic Map7q13NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-alpha-phellandrene  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
10-formyltetrahydrofolic acid  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-D  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
4,4'-diaminodiphenylmethane  (EXP,ISO)
5,6,7,8-tetrahydrofolic acid  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
alpha-phellandrene  (ISO)
amitrole  (EXP)
antimycin A  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzethonium chloride  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chromium trinitrate  (ISO)
clobetasol  (ISO)
cobalt atom  (ISO)
cobalt dichloride  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
Cuprizon  (EXP)
cyclosporin A  (ISO)
D-glucose  (ISO)
dexamethasone  (ISO)
diclofenac  (ISO)
Didecyldimethylammonium  (ISO)
dimethyl-(phenylmethyl)-[2-[2-[4-(2,4,4-trimethylpentan-2-yl)phenoxy]ethoxy]ethyl]ammonium  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
fentin chloride  (EXP)
ferric oxide  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fructose  (ISO)
gentamycin  (EXP)
glucose  (ISO)
hydroquinone  (ISO)
indometacin  (ISO)
iodide salt  (EXP)
isobutanol  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lucanthone  (ISO)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
Mitotane  (ISO)
monosodium L-glutamate  (ISO)
N-ethyl-N-nitrosourea  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodimethylamine  (EXP)
nickel sulfate  (ISO)
nitrofen  (EXP)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
panobinostat  (ISO)
paraquat  (EXP)
perfluorooctanoic acid  (EXP,ISO)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
resveratrol  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
Soman  (EXP)
streptozocin  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
Tungsten carbide  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
mitochondrion  (IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18614015   PMID:20498374   PMID:21238436   PMID:23533145  


Genomics

Comparative Map Data
Aldh1l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8722,141,872 - 22,193,403 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl722,141,842 - 22,193,398 (+)EnsemblGRCr8
mRatBN7.2720,254,246 - 20,305,793 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl720,254,233 - 20,305,776 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx722,226,671 - 22,277,861 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0724,389,426 - 24,440,621 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0724,166,438 - 24,217,632 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0726,375,866 - 26,425,838 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl726,375,866 - 26,425,108 (+)Ensemblrn6Rnor6.0
Rnor_5.0726,506,321 - 26,555,206 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4722,398,067 - 22,450,381 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera717,456,470 - 17,507,229 (+)NCBICelera
RGSC_v3.1722,418,181 - 22,469,924 (+)NCBI
Cytogenetic Map7q13NCBI
ALDH1L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812105,019,790 - 105,084,458 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12105,019,784 - 105,107,643 (-)Ensemblhg38GRCh38
GRCh3712105,413,568 - 105,478,236 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612103,942,332 - 104,002,366 (-)NCBIBuild 36Build 36hg18NCBI36
Celera12105,078,239 - 105,142,624 (-)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12102,472,652 - 102,538,019 (-)NCBIHuRef
CHM1_112105,379,314 - 105,443,992 (-)NCBICHM1_1
T2T-CHM13v2.012104,981,395 - 105,046,228 (-)NCBIT2T-CHM13v2.0
Aldh1l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391083,320,386 - 83,370,008 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1083,323,314 - 83,370,004 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381083,487,447 - 83,534,146 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1083,487,450 - 83,534,140 (-)Ensemblmm10GRCm38
MGSCv371082,950,192 - 82,996,885 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361082,917,249 - 82,963,861 (-)NCBIMGSCv36mm8
Celera1085,474,860 - 85,521,640 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1041.27NCBI
Aldh1l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540539,387,527 - 39,437,322 (-)Ensembl
ChiLan1.0NW_00495540539,387,949 - 39,437,282 (-)NCBIChiLan1.0ChiLan1.0
ALDH1L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210113,084,633 - 113,154,101 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112113,080,726 - 113,174,017 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012102,596,881 - 102,661,617 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112105,992,398 - 106,046,239 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12105,997,045 - 106,056,607 (-)EnsemblpanPan2panpan1.1
ALDH1L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11033,310,523 - 33,365,677 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1033,310,558 - 33,365,228 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1033,229,898 - 33,285,026 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01034,151,792 - 34,207,579 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1034,151,821 - 34,207,560 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11033,887,203 - 33,942,545 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01034,171,323 - 34,226,449 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01034,364,647 - 34,420,074 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Aldh1l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494516,595,327 - 16,651,070 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364929,605,708 - 9,657,743 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364929,605,611 - 9,657,717 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALDH1L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl579,492,732 - 79,558,701 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1579,492,672 - 79,558,702 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2582,894,904 - 82,954,624 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ALDH1L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111100,242,649 - 100,311,164 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11100,247,262 - 100,298,621 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037144,713,789 - 144,779,293 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aldh1l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247503,912,002 - 3,961,963 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247503,912,030 - 4,054,170 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Aldh1l2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11164,974,154 - 165,023,476 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Aldh1l2
454 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:468
Count of miRNA genes:163
Interacting mature miRNAs:187
Transcripts:ENSRNOT00000059639, ENSRNOT00000072587, ENSRNOT00000075809
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)72154197751639954Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)72154197751639954Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)72154197735707405Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72092049437412865Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71746044762460447Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)72005723265057232Rat

Markers in Region
RH130819  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2720,305,327 - 20,305,530 (+)MAPPERmRatBN7.2
Rnor_6.0726,425,507 - 26,425,709NCBIRnor6.0
Rnor_5.0726,554,875 - 26,555,077UniSTSRnor5.0
RGSC_v3.4722,450,050 - 22,450,252UniSTSRGSC3.4
Celera717,506,898 - 17,507,100UniSTS
RH 3.4 Map7117.95UniSTS
Cytogenetic Map7q13UniSTS
AU049799  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2720,293,717 - 20,293,850 (+)MAPPERmRatBN7.2
Rnor_6.0726,414,306 - 26,414,438NCBIRnor6.0
Rnor_5.0726,543,674 - 26,543,806UniSTSRnor5.0
RGSC_v3.4722,438,220 - 22,438,352UniSTSRGSC3.4
Celera717,495,138 - 17,495,270UniSTS
Cytogenetic Map7q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 36 59 6 281 136 11 140 62 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000059639   ⟹   ENSRNOP00000056394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl722,150,893 - 22,190,690 (+)Ensembl
mRatBN7.2 Ensembl720,262,671 - 20,303,079 (+)Ensembl
Rnor_6.0 Ensembl726,375,866 - 26,425,108 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099798   ⟹   ENSRNOP00000077904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl722,141,842 - 22,193,398 (+)Ensembl
mRatBN7.2 Ensembl720,254,306 - 20,305,775 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118245   ⟹   ENSRNOP00000080990
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl722,141,842 - 22,193,398 (+)Ensembl
mRatBN7.2 Ensembl720,254,233 - 20,305,776 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000167569   ⟹   ENSRNOP00000103361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl722,141,842 - 22,193,398 (+)Ensembl
RefSeq Acc Id: NM_001191778   ⟹   NP_001178707
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,141,872 - 22,193,403 (+)NCBI
mRatBN7.2720,254,246 - 20,305,793 (+)NCBI
Rnor_6.0726,375,866 - 26,425,838 (+)NCBI
Rnor_5.0726,506,321 - 26,555,206 (+)NCBI
Celera717,456,470 - 17,507,229 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001414921   ⟹   NP_001401850
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8722,141,872 - 22,193,403 (+)NCBI
mRatBN7.2720,254,246 - 20,305,793 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001178707 (Get FASTA)   NCBI Sequence Viewer  
  NP_001401850 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM17081 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000056394.6
  ENSRNOP00000077904.1
  ENSRNOP00000080990
  ENSRNOP00000080990.1
  ENSRNOP00000103361
  ENSRNOP00000103361.1
RefSeq Acc Id: NP_001178707   ⟸   NM_001191778
- Peptide Label: isoform 2
- UniProtKB: A0A8I5ZJL8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000056394   ⟸   ENSRNOT00000059639
Ensembl Acc Id: ENSRNOP00000080990   ⟸   ENSRNOT00000118245
Ensembl Acc Id: ENSRNOP00000077904   ⟸   ENSRNOT00000099798
RefSeq Acc Id: NP_001401850   ⟸   NM_001414921
- Peptide Label: isoform 1
- UniProtKB: A0A8I5ZRH3 (UniProtKB/TrEMBL),   A0A8I5ZJL8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000103361   ⟸   ENSRNOT00000167569
Protein Domains
Carrier

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZTP0-F1-model_v2 AlphaFold D3ZTP0 1-922 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695107
Promoter ID:EPDNEW_R5632
Type:initiation region
Name:Aldh1l2_1
Description:aldehyde dehydrogenase 1 family, member L2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0726,375,798 - 26,375,858EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309458 AgrOrtholog
BioCyc Gene G2FUF-34587 BioCyc
Ensembl Genes ENSRNOG00000008586 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000059639.7 UniProtKB/TrEMBL
  ENSRNOT00000099798.2 UniProtKB/TrEMBL
  ENSRNOT00000118245 ENTREZGENE
  ENSRNOT00000118245.2 UniProtKB/TrEMBL
  ENSRNOT00000167569 ENTREZGENE
  ENSRNOT00000167569.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1200.10 UniProtKB/TrEMBL
  3.10.25.10 UniProtKB/TrEMBL
  Aldehyde Dehydrogenase, Chain A, domain 1 UniProtKB/TrEMBL
  Aldehyde Dehydrogenase, Chain A, domain 2 UniProtKB/TrEMBL
  Formyl transferase, N-terminal domain UniProtKB/TrEMBL
InterPro 10_FTHF_DH UniProtKB/TrEMBL
  ACP-like_sf UniProtKB/TrEMBL
  Acyl_carrier_prot-like UniProtKB/TrEMBL
  Ald_DH/histidinol_DH UniProtKB/TrEMBL
  Ald_DH_C UniProtKB/TrEMBL
  Ald_DH_CS UniProtKB/TrEMBL
  Ald_DH_CS_GLU UniProtKB/TrEMBL
  Ald_DH_N UniProtKB/TrEMBL
  Aldehyde_DH_dom UniProtKB/TrEMBL
  Formyl_trans_C UniProtKB/TrEMBL
  Formyl_trans_C_sf UniProtKB/TrEMBL
  Formyl_transf_N UniProtKB/TrEMBL
  Formyl_transf_N_sf UniProtKB/TrEMBL
  Formyl_transferase_C-like UniProtKB/TrEMBL
  GART_AS UniProtKB/TrEMBL
  PPantetheine_attach_site UniProtKB/TrEMBL
NCBI Gene 299699 ENTREZGENE
PANTHER ALDEHYDE DEHYDROGENASE-RELATED UniProtKB/TrEMBL
Pfam Aldedh UniProtKB/TrEMBL
  Formyl_trans_C UniProtKB/TrEMBL
  Formyl_trans_N UniProtKB/TrEMBL
  PP-binding UniProtKB/TrEMBL
PhenoGen Aldh1l2 PhenoGen
PIRSF 10-FTHFDH UniProtKB/TrEMBL
PROSITE ACP_DOMAIN UniProtKB/TrEMBL
  ALDEHYDE_DEHYDR_CYS UniProtKB/TrEMBL
  ALDEHYDE_DEHYDR_GLU UniProtKB/TrEMBL
  GART UniProtKB/TrEMBL
  PHOSPHOPANTETHEINE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008586 RatGTEx
Superfamily-SCOP ACP_like UniProtKB/TrEMBL
  Aldehyde_DH/Histidinol_DH UniProtKB/TrEMBL
  FMT_C_like UniProtKB/TrEMBL
  formyl_transf UniProtKB/TrEMBL
UniProt A0A8I5ZJL8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZRH3 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LNR0_RAT UniProtKB/TrEMBL
  D3ZTP0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Aldh1l2  aldehyde dehydrogenase 1 family, member L2   Aldh1l2_predicted  aldehyde dehydrogenase 1 family, member L2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Aldh1l2_predicted  aldehyde dehydrogenase 1 family, member L2 (predicted)  RGD1309458_predicted  similar to RIKEN cDNA D330038I09 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1309458_predicted  similar to RIKEN cDNA D330038I09 (predicted)  LOC299699_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC299699_predicted  similar to RIKEN cDNA D330038I09 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL