Med30 (mediator complex subunit 30) - Rat Genome Database

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Gene: Med30 (mediator complex subunit 30) Rattus norvegicus
Analyze
Symbol: Med30
Name: mediator complex subunit 30
RGD ID: 1309369
Description: Contributes to ubiquitin protein ligase activity. Involved in protein ubiquitination. Part of ubiquitin ligase complex. Orthologous to human MED30 (mediator complex subunit 30); PARTICIPATES IN RNA polymerase II transcription pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC299905; mediator of RNA polymerase II transcription subunit 30; Thrap6; thyroid hormone receptor associated protein 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8785,894,638 - 85,916,373 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl785,894,605 - 85,917,973 (+)EnsemblGRCr8
mRatBN7.2784,004,735 - 84,026,474 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl784,004,722 - 84,026,595 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx785,915,756 - 85,937,487 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0788,116,940 - 88,138,670 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0787,922,437 - 87,944,175 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0792,234,584 - 92,260,019 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl792,234,597 - 92,256,100 (+)Ensemblrn6Rnor6.0
Rnor_5.0792,876,545 - 92,898,052 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4788,997,614 - 89,019,354 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera780,859,688 - 80,881,276 (+)NCBICelera
RGSC_v3.1788,643,578 - 89,040,049 (+)NCBI
Cytogenetic Map7q31NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mammalian mediator subunit mMED8 is an Elongin BC-interacting protein that can assemble with Cul2 and Rbx1 to reconstitute a ubiquitin ligase. Brower CS, etal., Proc Natl Acad Sci U S A. 2002 Aug 6;99(16):10353-8. Epub 2002 Jul 29.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. The Mediator complex and transcription regulation. Poss ZC, etal., Crit Rev Biochem Mol Biol. 2013 Nov-Dec;48(6):575-608. doi: 10.3109/10409238.2013.840259. Epub 2013 Oct 3.
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10198638   PMID:10235267   PMID:11867769   PMID:12218053   PMID:15340084   PMID:20720539  


Genomics

Comparative Map Data
Med30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8785,894,638 - 85,916,373 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl785,894,605 - 85,917,973 (+)EnsemblGRCr8
mRatBN7.2784,004,735 - 84,026,474 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl784,004,722 - 84,026,595 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx785,915,756 - 85,937,487 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0788,116,940 - 88,138,670 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0787,922,437 - 87,944,175 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0792,234,584 - 92,260,019 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl792,234,597 - 92,256,100 (+)Ensemblrn6Rnor6.0
Rnor_5.0792,876,545 - 92,898,052 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4788,997,614 - 89,019,354 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera780,859,688 - 80,881,276 (+)NCBICelera
RGSC_v3.1788,643,578 - 89,040,049 (+)NCBI
Cytogenetic Map7q31NCBI
MED30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388117,520,713 - 117,540,262 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8117,520,710 - 117,540,262 (+)Ensemblhg38GRCh38
GRCh378118,532,952 - 118,552,501 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368118,602,211 - 118,621,682 (+)NCBIBuild 36Build 36hg18NCBI36
Build 348118,602,210 - 118,621,680NCBI
Celera8114,721,685 - 114,741,221 (+)NCBICelera
Cytogenetic Map8q24.11NCBI
HuRef8113,859,613 - 113,879,149 (+)NCBIHuRef
CHM1_18118,573,283 - 118,592,817 (+)NCBICHM1_1
T2T-CHM13v2.08118,648,865 - 118,668,421 (+)NCBIT2T-CHM13v2.0
Med30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391552,575,841 - 52,593,827 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1552,575,804 - 52,593,960 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381552,712,445 - 52,730,431 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1552,712,408 - 52,730,564 (+)Ensemblmm10GRCm38
MGSCv371552,544,000 - 52,561,986 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361552,542,528 - 52,560,514 (+)NCBIMGSCv36mm8
Celera1554,277,463 - 54,295,921 (+)NCBICelera
Cytogenetic Map15CNCBI
cM Map1519.95NCBI
Med30
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541723,538,809 - 23,559,611 (+)Ensembl
ChiLan1.0NW_00495541723,538,984 - 23,557,837 (+)NCBIChiLan1.0ChiLan1.0
MED30
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27134,943,257 - 134,962,765 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18110,457,257 - 110,478,124 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08114,211,278 - 114,230,838 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18116,732,720 - 116,752,249 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8116,732,283 - 116,752,249 (+)EnsemblpanPan2panpan1.1
MED30
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11316,928,166 - 16,949,503 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1316,928,161 - 16,949,295 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1316,929,444 - 16,950,575 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01317,224,651 - 17,245,829 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1317,224,646 - 17,247,241 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11316,961,103 - 16,982,249 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01317,061,445 - 17,082,607 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01317,305,755 - 17,326,852 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Med30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530321,372,257 - 21,391,244 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647028,798,649 - 28,817,176 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647028,798,356 - 28,822,143 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MED30
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl421,198,743 - 21,215,618 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1421,198,740 - 21,215,634 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2422,441,049 - 22,457,942 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MED30
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18112,162,112 - 112,181,630 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8112,162,149 - 112,181,585 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603928,127,856 - 28,147,399 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Med30
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476315,831,456 - 15,848,636 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476315,831,359 - 15,847,761 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Med30
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11227,222,079 - 227,245,106 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Med30
65 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:223
Count of miRNA genes:152
Interacting mature miRNAs:172
Transcripts:ENSRNOT00000067491
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74511390390113903Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)771103011106126789Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)75170064396700643Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
1298525Cm1Cardiac mass QTL 12.7heart mass (VT:0007028)heart wet weight (CMO:0000069)756625161101625161Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)763889858108889858Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)755498584105834451Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74847504993475049Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
1641908Teswt1Testicular weight QTL 13.28testis mass (VT:1000644)both testes wet weight (CMO:0000175)78211124596700643Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
724537Niddm52Non-insulin dependent diabetes mellitus QTL 520.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)78211124595485241Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)762963207107963207Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)763889858108889858Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
2303582Gluco53Glucose level QTL 533blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)74860308793603087Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
D7Rat42  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2784,001,546 - 84,001,720 (+)MAPPERmRatBN7.2
Rnor_6.0792,231,774 - 92,231,947NCBIRnor6.0
Rnor_5.0792,873,725 - 92,873,898UniSTSRnor5.0
RGSC_v3.4788,994,793 - 88,995,154RGDRGSC3.4
RGSC_v3.4788,994,909 - 88,995,082UniSTSRGSC3.4
Celera780,856,347 - 80,856,520UniSTS
RGSC_v3.1789,015,639 - 89,015,812RGD
RH 3.4 Map7576.0RGD
RH 3.4 Map7576.0UniSTS
RH 2.0 Map7484.8RGD
FHH x ACI Map741.16RGD
Cytogenetic Map7q31UniSTS
D7Rat161  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2784,005,996 - 84,006,171 (+)MAPPERmRatBN7.2
Rnor_6.0792,235,865 - 92,236,039NCBIRnor6.0
Rnor_5.0792,877,816 - 92,877,990UniSTSRnor5.0
RGSC_v3.4788,998,881 - 88,999,056RGDRGSC3.4
RGSC_v3.4788,998,882 - 88,999,056UniSTSRGSC3.4
Celera780,860,956 - 80,861,130UniSTS
RGSC_v3.1789,019,410 - 89,019,871RGD
FHH x ACI Map741.16RGD
FHH x ACI Map741.16UniSTS
Cytogenetic Map7q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000067491   ⟹   ENSRNOP00000062911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl785,894,634 - 85,917,973 (+)Ensembl
mRatBN7.2 Ensembl784,004,729 - 84,026,473 (+)Ensembl
Rnor_6.0 Ensembl792,234,597 - 92,256,100 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089991   ⟹   ENSRNOP00000070045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl785,894,605 - 85,917,972 (+)Ensembl
mRatBN7.2 Ensembl784,004,722 - 84,026,595 (+)Ensembl
Rnor_6.0 Ensembl792,234,682 - 92,255,963 (+)Ensembl
RefSeq Acc Id: NM_001130539   ⟹   NP_001124011
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8785,894,638 - 85,916,373 (+)NCBI
mRatBN7.2784,004,735 - 84,026,474 (+)NCBI
Rnor_6.0792,234,597 - 92,256,100 (+)NCBI
Rnor_5.0792,876,545 - 92,898,052 (+)NCBI
RGSC_v3.4788,997,614 - 89,019,354 (+)RGD
Celera780,859,688 - 80,881,276 (+)RGD
Sequence:
RefSeq Acc Id: NM_001399687   ⟹   NP_001386616
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8785,894,638 - 85,916,373 (+)NCBI
mRatBN7.2784,004,735 - 84,026,474 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001124011 (Get FASTA)   NCBI Sequence Viewer  
  NP_001386616 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM16271 (Get FASTA)   NCBI Sequence Viewer  
  EDM16272 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000062911
  ENSRNOP00000062911.1
  ENSRNOP00000070045
  ENSRNOP00000070045.1
RefSeq Acc Id: NP_001124011   ⟸   NM_001130539
- Peptide Label: isoform 2
- UniProtKB: D3ZG00 (UniProtKB/TrEMBL),   A6HRF1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000062911   ⟸   ENSRNOT00000067491
Ensembl Acc Id: ENSRNOP00000070045   ⟸   ENSRNOT00000089991
RefSeq Acc Id: NP_001386616   ⟸   NM_001399687
- Peptide Label: isoform 1
- UniProtKB: A0A0G2JWW8 (UniProtKB/TrEMBL),   A6HRF0 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JWW8-F1-model_v2 AlphaFold A0A0G2JWW8 1-178 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695325
Promoter ID:EPDNEW_R5850
Type:initiation region
Name:Med30_1
Description:mediator complex subunit 30
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0792,234,599 - 92,234,659EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309369 AgrOrtholog
BioCyc Gene G2FUF-33412 BioCyc
Ensembl Genes ENSRNOG00000004844 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067491 ENTREZGENE
  ENSRNOT00000067491.4 UniProtKB/TrEMBL
  ENSRNOT00000089991 ENTREZGENE
  ENSRNOT00000089991.3 UniProtKB/TrEMBL
InterPro Mediator_Med30_met UniProtKB/TrEMBL
KEGG Report rno:299905 UniProtKB/TrEMBL
NCBI Gene 299905 ENTREZGENE
PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30 UniProtKB/TrEMBL
  PTHR31705 UniProtKB/TrEMBL
Pfam Med30 UniProtKB/TrEMBL
PhenoGen Med30 PhenoGen
RatGTEx ENSRNOG00000004844 RatGTEx
UniProt A0A0G2JWW8 ENTREZGENE, UniProtKB/TrEMBL
  A6HRF0 ENTREZGENE, UniProtKB/TrEMBL
  A6HRF1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZG00 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Med30  mediator complex subunit 30   Med30_predicted  mediator complex subunit 30 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Thrap6_predicted  thyroid hormone receptor associated protein 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED