Rxylt1 (ribitol xylosyltransferase 1) - Rat Genome Database

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Gene: Rxylt1 (ribitol xylosyltransferase 1) Rattus norvegicus
Analyze
Symbol: Rxylt1
Name: ribitol xylosyltransferase 1
RGD ID: 1309356
Description: Predicted to enable ribitol beta-1,4-xylosyltransferase activity. Predicted to be involved in protein O-linked glycosylation via mannose. Predicted to be located in nucleoplasm. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in congenital muscular dystrophy-dystroglycanopathy type A10. Orthologous to human RXYLT1 (ribitol xylosyltransferase 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC299841; ribitol-5-phosphate xylosyltransferase 1; Tmem5; transmembrane protein 5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8759,656,274 - 59,668,140 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl759,656,276 - 59,668,050 (-)EnsemblGRCr8
mRatBN7.2757,770,841 - 57,782,695 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl757,770,842 - 57,782,657 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx759,645,707 - 59,657,420 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0761,848,516 - 61,860,229 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0761,626,320 - 61,638,033 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0764,329,341 - 64,341,201 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl764,326,465 - 64,341,207 (-)Ensemblrn6Rnor6.0
Rnor_5.0764,550,349 - 64,562,321 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4761,857,941 - 61,870,960 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera754,952,923 - 54,964,657 (-)NCBICelera
RGSC_v3.1761,878,670 - 61,891,690 (-)NCBI
Cytogenetic Map7q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
azoxystrobin  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
cobalt dichloride  (EXP)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
deguelin  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
ethanol  (ISO)
fenthion  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
glyphosate  (EXP)
GSK-J4  (ISO)
imidacloprid  (EXP)
indometacin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methidathion  (ISO)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
progesterone  (ISO)
pyrimidifen  (ISO)
rac-lactic acid  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
thiabendazole  (EXP)
thifluzamide  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP,ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
catalytic complex  (IEA,ISO)
Golgi apparatus  (IEA,ISO)
Golgi membrane  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:25279699   PMID:27130732   PMID:27733679  


Genomics

Comparative Map Data
Rxylt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8759,656,274 - 59,668,140 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl759,656,276 - 59,668,050 (-)EnsemblGRCr8
mRatBN7.2757,770,841 - 57,782,695 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl757,770,842 - 57,782,657 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx759,645,707 - 59,657,420 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0761,848,516 - 61,860,229 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0761,626,320 - 61,638,033 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0764,329,341 - 64,341,201 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl764,326,465 - 64,341,207 (-)Ensemblrn6Rnor6.0
Rnor_5.0764,550,349 - 64,562,321 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4761,857,941 - 61,870,960 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera754,952,923 - 54,964,657 (-)NCBICelera
RGSC_v3.1761,878,670 - 61,891,690 (-)NCBI
Cytogenetic Map7q22NCBI
RXYLT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381263,779,909 - 63,809,562 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1263,779,833 - 63,809,792 (+)Ensemblhg38GRCh38
GRCh371264,173,689 - 64,203,342 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361262,459,904 - 62,489,154 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341262,459,903 - 62,489,154NCBI
Celera1263,838,644 - 63,867,894 (+)NCBICelera
Cytogenetic Map12q14.2NCBI
HuRef1261,224,906 - 61,255,033 (+)NCBIHuRef
CHM1_11264,141,305 - 64,171,061 (+)NCBICHM1_1
T2T-CHM13v2.01263,758,617 - 63,788,268 (+)NCBIT2T-CHM13v2.0
Rxylt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910121,916,844 - 121,933,271 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10121,914,019 - 121,933,276 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3810122,080,939 - 122,097,366 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10122,078,114 - 122,097,371 (-)Ensemblmm10GRCm38
MGSCv3710121,518,316 - 121,534,158 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3610121,484,320 - 121,500,162 (-)NCBIMGSCv36mm8
Celera10124,470,597 - 124,486,440 (-)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1070.25NCBI
Rxylt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545810,648,471 - 10,676,813 (+)Ensembl
ChiLan1.0NW_00495545810,649,364 - 10,674,913 (+)NCBIChiLan1.0ChiLan1.0
RXYLT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21030,548,494 - 30,578,425 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11230,545,646 - 30,575,215 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01225,101,865 - 25,131,886 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11225,599,173 - 25,628,872 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1225,599,173 - 25,628,872 (-)EnsemblpanPan2panpan1.1
RXYLT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1106,630,076 - 6,648,387 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha106,553,497 - 6,577,756 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0106,726,796 - 6,751,359 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl106,726,698 - 6,751,356 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1106,593,145 - 6,617,573 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0106,851,038 - 6,875,466 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0106,982,457 - 7,006,893 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rxylt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494551,862,233 - 51,883,897 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365452,226,232 - 2,247,976 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365452,226,238 - 2,247,971 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RXYLT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl528,247,412 - 28,276,273 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1528,247,409 - 28,276,276 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2531,433,526 - 31,462,220 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RXYLT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11159,468,720 - 59,498,425 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1159,468,714 - 59,500,249 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037186,308,517 - 186,338,598 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rxylt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248024,509,884 - 4,533,356 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248024,510,164 - 4,533,305 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rxylt1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11200,550,793 - 200,561,223 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rxylt1
94 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:25
Count of miRNA genes:25
Interacting mature miRNAs:25
Transcripts:ENSRNOT00000006051
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72380760668807606Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74511390390113903Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72663805771638057Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74913799967614020Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)75170064396700643Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
1298525Cm1Cardiac mass QTL 12.7heart mass (VT:0007028)heart wet weight (CMO:0000069)756625161101625161Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73984590284845902Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73299870277998702Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)74968283263890004Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73617876481178764Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)755498584105834451Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74847504993475049Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73617876481178764Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72862457565788017Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71746044762460447Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
2303582Gluco53Glucose level QTL 533blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)74860308793603087Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)72005723265057232Rat
61439Cia8Collagen induced arthritis QTL 85.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)72718291472182914Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000006051   ⟹   ENSRNOP00000006051
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl759,656,276 - 59,668,050 (-)Ensembl
mRatBN7.2 Ensembl757,770,842 - 57,782,657 (-)Ensembl
Rnor_6.0 Ensembl764,326,465 - 64,341,207 (-)Ensembl
RefSeq Acc Id: NM_001024759   ⟹   NP_001019930
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8759,656,274 - 59,667,972 (-)NCBI
mRatBN7.2757,770,841 - 57,782,539 (-)NCBI
Rnor_6.0764,329,350 - 64,341,126 (-)NCBI
Rnor_5.0764,550,349 - 64,562,321 (-)NCBI
RGSC_v3.4761,857,941 - 61,870,960 (-)RGD
Celera754,952,923 - 54,964,657 (-)RGD
Sequence:
RefSeq Acc Id: XM_008765391   ⟹   XP_008763613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8759,656,275 - 59,668,140 (-)NCBI
mRatBN7.2757,770,841 - 57,782,695 (-)NCBI
Rnor_6.0764,329,341 - 64,341,201 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039078749   ⟹   XP_038934677
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8759,656,275 - 59,666,849 (-)NCBI
mRatBN7.2757,770,841 - 57,781,417 (-)NCBI
RefSeq Acc Id: XM_039078750   ⟹   XP_038934678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8759,656,275 - 59,665,405 (-)NCBI
mRatBN7.2757,770,841 - 57,779,983 (-)NCBI
RefSeq Acc Id: NP_001019930   ⟸   NM_001024759
- UniProtKB: F7EM09 (UniProtKB/TrEMBL),   A6HQM9 (UniProtKB/TrEMBL),   Q4V8J9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763613   ⟸   XM_008765391
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000006051   ⟸   ENSRNOT00000006051
RefSeq Acc Id: XP_038934677   ⟸   XM_039078749
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038934678   ⟸   XM_039078750
- Peptide Label: isoform X2
Protein Domains
RXYLT1 C-terminal   RXYLT1 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F7EM09-F1-model_v2 AlphaFold F7EM09 1-443 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695231
Promoter ID:EPDNEW_R5755
Type:initiation region
Name:Tmem5_1
Description:transmembrane protein 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0764,341,140 - 64,341,200EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309356 AgrOrtholog
BioCyc Gene G2FUF-33857 BioCyc
BioCyc Pathway PWY-7981 [alpha-dystroglycan glycosylation] BioCyc
BioCyc Pathway Image PWY-7981 BioCyc
Ensembl Genes ENSRNOG00000004421 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006051 ENTREZGENE
  ENSRNOT00000006051.8 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7441970 IMAGE-MGC_LOAD
InterPro RXYLT1-like UniProtKB/TrEMBL
  RXYLT1_C UniProtKB/TrEMBL
  RXYLT1_N UniProtKB/TrEMBL
KEGG Report rno:299841 UniProtKB/TrEMBL
MGC_CLONE MGC:114386 IMAGE-MGC_LOAD
NCBI Gene 299841 ENTREZGENE
PANTHER RIBITOL-5-PHOSPHATE XYLOSYLTRANSFERASE 1 UniProtKB/TrEMBL
  RIBITOL-5-PHOSPHATE XYLOSYLTRANSFERASE 1 UniProtKB/TrEMBL
Pfam RXYLT1_C UniProtKB/TrEMBL
  RXYLT1_N UniProtKB/TrEMBL
PhenoGen Rxylt1 PhenoGen
RatGTEx ENSRNOG00000004421 RatGTEx
UniProt A6HQM9 ENTREZGENE, UniProtKB/TrEMBL
  F7EM09 ENTREZGENE
  Q4V8J9 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F7EM09 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-01-18 Rxylt1  ribitol xylosyltransferase 1  Tmem5  transmembrane protein 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Tmem5  transmembrane protein 5  Tmem5_predicted  transmembrane protein 5 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Tmem5_predicted  transmembrane protein 5 (predicted)      Symbol and Name status set to approved 70820 APPROVED