Advanced Search (OLGA)

Gene: Hmg20b (high mobility group 20 B) Rattus norvegicus

Subscribe to Updates

Analyze

Symbol:

Hmg20b

Name:

high mobility group 20 B

RGD ID:

1309235

Description:

Predicted to enable DNA binding activity. Predicted to be involved in regulation of gene expression. Predicted to act upstream of or within negative regulation of protein sumoylation; positive regulation of neuron differentiation; and skeletal muscle cell differentiation. Predicted to be located in nuclear body. Predicted to be active in nucleus. Orthologous to human HMG20B (high mobility group 20B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC362825; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HMG20B (high mobility group 20B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Hmg20b (high mobility group 20B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Hmg20b (high mobility group 20B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HMG20B (high mobility group 20B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	HMG20B (high mobility group 20B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Hmg20b (high mobility group 20B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HMG20B (high mobility group 20B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HMG20B (high mobility group 20B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Hmg20b (high mobility group 20B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	INS (insulin)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Hmg20b (high mobility group 20B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	HMG20B (high mobility group 20B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	hmg20b (high mobility group 20B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	hmg-20	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	Hmg-2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	hmg20b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	9,019,670 - 9,024,382 (+)	NCBI		GRCr8
mRatBN7.2	7	8,368,934 - 8,373,650 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	8,368,990 - 8,373,640 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	11,254,569 - 11,259,228 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	13,130,054 - 13,134,714 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	10,997,679 - 11,002,358 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	11,238,594 - 11,243,312 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	11,238,630 - 11,243,310 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	11,405,476 - 11,410,192 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	9,853,290 - 9,857,970 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	9,837,939 - 9,857,556 (+)	NCBI
Celera	7	6,558,025 - 6,562,701 (+)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Hmg20b	Rat	Neurodevelopmental Disorders		ISO	HMG20B (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868
Hmg20b	Rat	RASopathy		ISO	HMG20B (Homo sapiens)	8554872	ClinVar Annotator: match by term: RASopathy	ClinVar	PMID:23379592 more ...

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Hmg20b	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	Hmg20b (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of HMG20B mRNA	CTD	PMID:22206623
Hmg20b	Rat	1,2-dimethylhydrazine	increases expression	ISO	Hmg20b (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in increased expression of HMG20B mRNA	CTD	PMID:22206623
Hmg20b	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	Hmg20b (Mus musculus)	6480464	Tetrachlorodibenzodioxin results in increased expression of HMG20B mRNA	CTD	PMID:24058054
Hmg20b	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of HMG20B mRNA	CTD	PMID:33387578 and PMID:34747641
Hmg20b	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Hmg20b (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of HMG20B mRNA	CTD	PMID:21570461 and PMID:26377647
Hmg20b	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	HMG20B (Homo sapiens)	6480464	Tetrachlorodibenzodioxin results in increased expression of HMG20B mRNA	CTD	PMID:20106945 and PMID:21632981
Hmg20b	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	Hmg20b (Mus musculus)	6480464	bisphenol S results in increased expression of HMG20B mRNA	CTD	PMID:39298647
Hmg20b	Rat	4,4'-sulfonyldiphenol	affects methylation	ISO	Hmg20b (Mus musculus)	6480464	bisphenol S affects the methylation of HMG20B gene	CTD	PMID:31683443
Hmg20b	Rat	5-fluorouracil	decreases expression	ISO	HMG20B (Homo sapiens)	6480464	Fluorouracil results in decreased expression of HMG20B mRNA	CTD	PMID:16709241
Hmg20b	Rat	aflatoxin B1	increases methylation	ISO	HMG20B (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of HMG20B gene	CTD	PMID:28458013
Hmg20b	Rat	benzo[b]fluoranthene	increases expression	ISO	Hmg20b (Mus musculus)	6480464	benzo(b)fluoranthene results in increased expression of HMG20B mRNA	CTD	PMID:26377693
Hmg20b	Rat	beta-lapachone	decreases expression	ISO	HMG20B (Homo sapiens)	6480464	beta-lapachone results in decreased expression of HMG20B mRNA	CTD	PMID:38218311
Hmg20b	Rat	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of HMG20B mRNA	CTD	PMID:25181051
Hmg20b	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of HMG20B mRNA	CTD	PMID:30816183 more ...
Hmg20b	Rat	bisphenol A	affects methylation	ISO	Hmg20b (Mus musculus)	6480464	bisphenol A affects the methylation of HMG20B promoter	CTD	PMID:27334623
Hmg20b	Rat	bisphenol F	decreases expression	ISO	Hmg20b (Mus musculus)	6480464	bisphenol F results in decreased expression of HMG20B mRNA	CTD	PMID:38685157
Hmg20b	Rat	cadmium atom	multiple interactions	ISO	HMG20B (Homo sapiens)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of HMG20B mRNA	CTD	PMID:35301059
Hmg20b	Rat	cadmium dichloride	increases methylation	EXP		6480464	Cadmium Chloride results in increased methylation of HMG20B promoter	CTD	PMID:22457795
Hmg20b	Rat	cadmium dichloride	multiple interactions	ISO	HMG20B (Homo sapiens)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of HMG20B mRNA	CTD	PMID:35301059
Hmg20b	Rat	calcium silicate	decreases expression	ISO	Hmg20b (Mus musculus)	6480464	calcium silicate results in decreased expression of HMG20B mRNA	CTD	PMID:29279043
Hmg20b	Rat	cyclosporin A	increases expression	ISO	HMG20B (Homo sapiens)	6480464	Cyclosporine results in increased expression of HMG20B mRNA	CTD	PMID:22147139
Hmg20b	Rat	etoposide	affects response to substance	ISO	HMG20B (Homo sapiens)	6480464	HMG20B protein affects the susceptibility to Etoposide	CTD	PMID:16217747
Hmg20b	Rat	folic acid	multiple interactions	ISO	Hmg20b (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of HMG20B mRNA	CTD	PMID:22206623
Hmg20b	Rat	folpet	increases expression	ISO	Hmg20b (Mus musculus)	6480464	folpet results in increased expression of HMG20B mRNA	CTD	PMID:31558096
Hmg20b	Rat	gentamycin	decreases expression	EXP		6480464	Gentamicins results in decreased expression of HMG20B mRNA	CTD	PMID:33387578
Hmg20b	Rat	geraniol	decreases expression	ISO	HMG20B (Homo sapiens)	6480464	geraniol results in decreased expression of HMG20B mRNA	CTD	PMID:27683099
Hmg20b	Rat	mitomycin C	affects response to substance	ISO	HMG20B (Homo sapiens)	6480464	HMG20B protein affects the susceptibility to Mitomycin	CTD	PMID:16217747
Hmg20b	Rat	mitoxantrone	affects response to substance	ISO	HMG20B (Homo sapiens)	6480464	HMG20B protein affects the susceptibility to Mitoxantrone	CTD	PMID:16217747
Hmg20b	Rat	paracetamol	affects expression	ISO	Hmg20b (Mus musculus)	6480464	Acetaminophen affects the expression of HMG20B mRNA	CTD	PMID:17562736
Hmg20b	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of HMG20B mRNA	CTD	PMID:33387578
Hmg20b	Rat	pregnenolone 16alpha-carbonitrile	increases expression	EXP		6480464	Pregnenolone Carbonitrile results in increased expression of HMG20B mRNA	CTD	PMID:19162173
Hmg20b	Rat	sodium arsenite	decreases expression	ISO	HMG20B (Homo sapiens)	6480464	sodium arsenite results in decreased expression of HMG20B mRNA	CTD	PMID:38568856
Hmg20b	Rat	sunitinib	decreases expression	ISO	HMG20B (Homo sapiens)	6480464	Sunitinib results in decreased expression of HMG20B mRNA	CTD	PMID:31533062
Hmg20b	Rat	titanium dioxide	decreases methylation	ISO	Hmg20b (Mus musculus)	6480464	titanium dioxide results in decreased methylation of HMG20B promoter alternative form	CTD	PMID:35295148
Hmg20b	Rat	titanium dioxide	increases methylation	ISO	Hmg20b (Mus musculus)	6480464	titanium dioxide results in increased methylation of HMG20B gene and titanium dioxide results in increased methylation of HMG20B promoter alternative form	CTD	PMID:35295148
Hmg20b	Rat	triphenyl phosphate	affects expression	ISO	HMG20B (Homo sapiens)	6480464	triphenyl phosphate affects the expression of HMG20B mRNA	CTD	PMID:37042841
Hmg20b	Rat	urethane	increases expression	ISO	HMG20B (Homo sapiens)	6480464	Urethane results in increased expression of HMG20B mRNA	CTD	PMID:28818685
Hmg20b	Rat	valproic acid	increases expression	ISO	Hmg20b (Mus musculus)	6480464	Valproic Acid results in increased expression of HMG20B mRNA	CTD	PMID:20546886
Hmg20b	Rat	valproic acid	increases expression	ISO	HMG20B (Homo sapiens)	6480464	Valproic Acid results in increased expression of HMG20B mRNA	CTD	PMID:23179753 more ...
Hmg20b	Rat	valproic acid	affects expression	ISO	HMG20B (Homo sapiens)	6480464	Valproic Acid affects the expression of HMG20B mRNA	CTD	PMID:25979313
Hmg20b	Rat	valproic acid	increases methylation	ISO	HMG20B (Homo sapiens)	6480464	Valproic Acid results in increased methylation of HMG20B gene	CTD	PMID:29154799
Hmg20b	Rat	zinc atom	decreases expression	ISO	HMG20B (Homo sapiens)	6480464	Zinc deficiency results in decreased expression of HMG20B mRNA	CTD	PMID:18356318
Hmg20b	Rat	zinc(0)	decreases expression	ISO	HMG20B (Homo sapiens)	6480464	Zinc deficiency results in decreased expression of HMG20B mRNA	CTD	PMID:18356318

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Hmg20b	Rat	negative regulation of protein sumoylation	acts_upstream_of_or_within	IEA	UniProtKB:Q9Z104 and ensembl:ENSMUSP00000020454	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Hmg20b	Rat	negative regulation of protein sumoylation	acts_upstream_of_or_within	ISO	Hmg20b (Mus musculus)	1624291	PMID:22570500	RGD	PMID:22570500
Hmg20b	Rat	positive regulation of neuron differentiation	acts_upstream_of_or_within	ISO	Hmg20b (Mus musculus)	1624291	MGI:1914117 PMID:22570500	RGD	PMID:22570500
Hmg20b	Rat	positive regulation of neuron differentiation	acts_upstream_of_or_within	IEA	UniProtKB:Q9Z104 and ensembl:ENSMUSP00000020454	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Hmg20b	Rat	protein sumoylation	acts_upstream_of	ISO	Hmg20b (Mus musculus)	1624291	PMID:22570500	RGD	PMID:22570500
Hmg20b	Rat	protein sumoylation	acts_upstream_of	IEA	UniProtKB:Q9Z104 and ensembl:ENSMUSP00000020454	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Hmg20b	Rat	regulation of gene expression	involved_in	IBA	MGI:1914117 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Hmg20b	Rat	skeletal muscle cell differentiation	acts_upstream_of_or_within	IEA	UniProtKB:Q9Z104 and ensembl:ENSMUSP00000020454	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Hmg20b	Rat	skeletal muscle cell differentiation	acts_upstream_of_or_within	ISO	Hmg20b (Mus musculus)	1624291	PMID:22147266	RGD	PMID:22147266

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Hmg20b	Rat	nuclear body	located_in	IEA	UniProtKB:Q9P0W2 and ensembl:ENSP00000328269	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Hmg20b	Rat	nuclear body	located_in	ISO	HMG20B (Homo sapiens) and UniProtKB:Q9P0W2-1	1624291		RGD	GO_REF:0000052
Hmg20b	Rat	nucleoplasm	located_in	ISO	HMG20B (Homo sapiens) and UniProtKB:Q9P0W2-1	1624291		RGD	GO_REF:0000052
Hmg20b	Rat	nucleoplasm	located_in	IEA	UniProtKB:Q9P0W2 and ensembl:ENSP00000328269	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Hmg20b	Rat	nucleus	is_active_in	IBA	MGI:1914117 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Hmg20b	Rat	nucleus	located_in	IEA	UniRule:UR000400811	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Hmg20b	Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Hmg20b	Rat	DNA binding	enables	IEA	UniRule:UR000400811	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Hmg20b	Rat	DNA binding	enables	IEA	UniProtKB-KW:KW-0238	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Hmg20b	Rat	protein binding	enables	ISO	HMG20B (Homo sapiens)	1624291	UniProtKB:O75928-2 more ...	RGD	PMID:21399666 more ...
Hmg20b	Rat	protein binding	enables	ISO	Hmg20b (Mus musculus)	1624291	PR:Q9DC33 more ...	RGD	PMID:15102471 more ...

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:20530487	PMID:22147266	PMID:22570500

Hmg20b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	9,019,670 - 9,024,382 (+)	NCBI		GRCr8
mRatBN7.2	7	8,368,934 - 8,373,650 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	8,368,990 - 8,373,640 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	11,254,569 - 11,259,228 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	13,130,054 - 13,134,714 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	10,997,679 - 11,002,358 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	11,238,594 - 11,243,312 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	11,238,630 - 11,243,310 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	11,405,476 - 11,410,192 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	9,853,290 - 9,857,970 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	9,837,939 - 9,857,556 (+)	NCBI
Celera	7	6,558,025 - 6,562,701 (+)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

HMG20B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	3,572,944 - 3,579,083 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	3,572,777 - 3,579,088 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	3,572,942 - 3,579,081 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	3,523,943 - 3,530,081 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	3,525,521 - 3,530,079	NCBI
Celera	19	3,509,760 - 3,515,897 (+)	NCBI		Celera
Cytogenetic Map	19	p13.3	NCBI
HuRef	19	3,338,210 - 3,344,475 (+)	NCBI		HuRef
CHM1_1	19	3,572,606 - 3,578,717 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	3,551,100 - 3,557,239 (+)	NCBI		T2T-CHM13v2.0

Hmg20b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	81,181,880 - 81,186,777 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	81,181,882 - 81,186,314 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	81,346,046 - 81,350,943 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	81,346,048 - 81,350,480 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	80,808,791 - 80,813,202 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	80,749,181 - 80,753,539 (-)	NCBI		MGSCv36	mm8
Celera	10	82,366,836 - 82,371,247 (-)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

Hmg20b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	5,524,874 - 5,529,926 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	5,515,996 - 5,530,424 (+)	NCBI	ChiLan1.0	ChiLan1.0

HMG20B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	7,970,098 - 7,976,304 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	7,202,040 - 7,208,250 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	2,598,588 - 2,604,799 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	3,548,451 - 3,554,725 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	3,548,451 - 3,554,725 (+)	Ensembl	panpan1.1		panPan2

HMG20B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	55,840,192 - 55,844,949 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	55,841,959 - 55,844,862 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	55,565,327 - 55,570,345 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	56,500,142 - 56,505,157 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	56,500,137 - 56,505,529 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	55,555,796 - 55,560,811 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	56,039,212 - 56,044,218 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	56,237,958 - 56,242,974 (-)	NCBI		UU_Cfam_GSD_1.0

Hmg20b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	215,802,182 - 215,807,432 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	2,027,317 - 2,032,834 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	2,027,360 - 2,032,601 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HMG20B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	75,093,075 - 75,098,536 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	75,093,071 - 75,098,566 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

HMG20B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	3,333,731 - 3,340,033 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	3,333,885 - 3,340,138 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666081	5,148,505 - 5,155,151 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hmg20b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	6,278,111 - 6,283,244 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	6,277,743 - 6,283,154 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Hmg20b
14 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	69
Count of miRNA genes:	49
Interacting mature miRNAs:	61
Transcripts:	ENSRNOT00000028002
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	44782185	Rat
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	664270	26029351	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	5329019	50329019	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1	44822433	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat
10755438	Coatc9	Coat color QTL 9		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	3529280	48529280	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	31962314	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	7573985	52573985	Rat
2317047	Wbc4	White blood cell count QTL 4		0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	7	1	35342956	Rat
10755440	Coatc10	Coat color QTL 10		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	7496499	52496499	Rat
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	27829089	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34000259	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	31962314	Rat

RH130154

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	8,373,403 - 8,373,604 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	11,243,066 - 11,243,266	NCBI	Rnor6.0
Rnor_5.0	7	11,409,946 - 11,410,146	UniSTS	Rnor5.0
RGSC_v3.4	7	9,857,726 - 9,857,926	UniSTS	RGSC3.4
Celera	7	6,562,457 - 6,562,657	UniSTS
Cytogenetic Map	7	q11	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001108731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240946	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094643	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000028002 ⟹ ENSRNOP00000028002

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	8,369,039 - 8,373,637 (+)	Ensembl
Rnor_6.0 Ensembl	7	11,238,630 - 11,243,310 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086194 ⟹ ENSRNOP00000074794

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	8,368,990 - 8,373,640 (+)	Ensembl
Rnor_6.0 Ensembl	7	11,238,644 - 11,243,305 (+)	Ensembl

RefSeq Acc Id:

NM_001108731 ⟹ NP_001102201

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,019,702 - 9,024,382 (+)	NCBI
mRatBN7.2	7	8,368,967 - 8,373,648 (+)	NCBI
Rnor_6.0	7	11,238,630 - 11,243,310 (+)	NCBI
Rnor_5.0	7	11,405,476 - 11,410,192 (+)	NCBI
RGSC_v3.4	7	9,853,290 - 9,857,970 (+)	RGD
Celera	7	6,558,025 - 6,562,701 (+)	RGD

Sequence:

show sequence

GGGAGGAGCGGGCGCGGGCGCTTGGTTGGAGCGTCGCCGCATCCCAGGTCCCGGGAAAGTTTTTTCAGAGGTGAAAAGAGCCGGGAAGTCGGGGCCTGCGCGGGGCGGAGGCTGCGGGGCGCGGCCTC
CGGGACTCGATCTCGCAACAAAGGATCGCGGGGCCTCCCGCCCCAGGACCTACCCGCCCCGGGATCAGCCTCCCCCGCTTGGGCACCCCGGGGACCGGCCTGCGGTCCCGTCGGGGTGGCAGGCAGGA
ACCCCCTAACCTTTGCCGGCTTCTGTTCCAGGACCCCCCCGGAGTGGCCATGTCCCACGGTCCCCGGCAGCCAGGCGCAGCCACCGCACCTGCGGGAGGCAAGACTCCGGGCCAGCATGGGGCCTTTG
TAGTGGCTGTCAAGCAGGAGCGCAGCGAAGGTCCCCGTGCCGGAGAGAAGGGGCCCCAGGAGGAGGAGCCAGTGAAGAAGCGAGGCTGGCCCAAAGGCAAGAAAAGAAAGAAGATTCTCCCCAATGGG
CCCAAGGCCCCGGTCACGGGCTATGTTCGCTTCCTGAACGAGAGGCGGGAGCAGATTCGCACCCGACATCCGGACCTTCCCTTCCCGGAGATCACCAAGATGTTGGGCGCGGAGTGGAGCAAGCTGCA
GCCAGCAGAGAAGCAGCGGTACCTGGATGAGGCAGAGAAGGAGAAACAGCAGTACTTGAAGGAGCTGTGGGCATACCAGCAGTCAGAGGCCTACAAGGTCTGCACCGAGAAGATCCAAGAAAACAAAA
TAAAAAAAGAGGACTCCAGCTCTGGGCTCATGAACACCCTCCTGAATGGACACAAGGGTGTGGACTGCGGCGATGGCTTTTCAACCTTTGATGTTCCCATCTTCACTGAAGAGTTTTTGGACCAAAAC
AAAGCACGCGAGGCAGAGCTGCGGCGCCTGCGGAAGATGAACGTGGCTTTCGAGGAGCAGAACGCAGTGCTGCAGCGCCACACTCAGAGCATGAACAGCGCTCGTGAGCGTCTGGAGCAAGAGCTGGC
GCTGGAGGAGCGGCGCACGCTGGCGCTGCAACAGCAACTGCAGGCTGTGAGACAAGCGCTCACGGCTAGTTTCGCCTCTCTGCCGGTGCCCGGCACCGGGGAGACGCCGACGCTCGGAACGCTGGACT
TCTACATGGCGCGGCTTCACGGAGCCATCGAGCGCGACCCGGCGCAGCACGAGAGACTGATCGCGCGCGTCAAGGAGATCCTGGCGCGAGTAGCCAGCGAGCACCTGTGACAGGCCTCTTGGACCGGG
AGACGCCCCTCCACACCCGCCCAGGAAGAAGCTGCACCTTGGGGTCTCCAGACCCCCCTCAAATGAAATCTCAACTGCATCCCTTTAACCTCGAACCCCAACCCAGGTTGCAGAGCCCGGAAGACCTG
CCTGCCTCACAGGGAGGGTCACAGTACAGTGGGTCAGGAACAGAGGAACCATGGCCTCCGGACTCAGATACCCCACCGCCACCCCTGATGAAGAGCAGGACCCTAGGCCACTCACCATACAGCCACTG
GACCCACTGGGCAGGCGCTAACCAAGCAGCGCCGGGGTAGGGGTGGGGTAGTCCAACAGCCCCTTACCCCACGCCTTTCATCACTCAATCCGGACTTTTAAATATGTGTCAATAAAAGCAAGTGAGTT
TTCATTCAAGTT

hide sequence

RefSeq Acc Id:

XM_006240944 ⟹ XP_006241006

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,019,671 - 9,024,379 (+)	NCBI
mRatBN7.2	7	8,368,934 - 8,373,650 (+)	NCBI
Rnor_6.0	7	11,238,594 - 11,243,312 (+)	NCBI
Rnor_5.0	7	11,405,476 - 11,410,192 (+)	NCBI

Sequence:

show sequence

CCAATTGAAGCGCTAGGCTTGGGTTTATTAGCATGAGGGAGGAGCGGGCGCGGGCGCTTGGTTG
GAGCGTCGCCGCATCCCAGGTCCCGGGAAAGTTTTTTCAGAGGACCCCCCCGGAGTGGCCATGTCCCACGGTCCCCGGCAGCCAGGCGCAGCCACCGCACCTGCGGGAGGCAAGACTCCGGGCCAGCA
TGGGGCCTTTGTAGTGGCTGTCAAGCAGGAGCGCAGCGAAGGTCCCCGTGCCGGAGAGAAGGGGCCCCAGGAGGAGGAGGCTAGGCCCCGCCCACACGCCCCAGACCCCGCCCACAGTTCTCAGAGCC
CCTCCCAAGGACACAGCCCCCTCCTGCAGCCAGTGAAGAAGCGAGGCTGGCCCAAAGGCAAGAAAAGAAAGAAGATTCTCCCCAATGGGCCCAAGGCCCCGGTCACGGGCTATGTTCGCTTCCTGAAC
GAGAGGCGGGAGCAGATTCGCACCCGACATCCGGACCTTCCCTTCCCGGAGATCACCAAGATGTTGGGCGCGGAGTGGAGCAAGCTGCAGCCAGCAGAGAAGCAGCGGTACCTGGATGAGGCAGAGAA
GGAGAAACAGCAGTACTTGAAGGAGCTGTGGGCATACCAGCAGTCAGAGGCCTACAAGGTCTGCACCGAGAAGATCCAAGAAAACAAAATAAAAAAAGAGGACTCCAGCTCTGGGCTCATGAACACCC
TCCTGAATGGACACAAGGGTGTGGACTGCGGCGATGGCTTTTCAACCTTTGATGTTCCCATCTTCACTGAAGAGTTTTTGGACCAAAACAAAGCACGCGAGGCAGAGCTGCGGCGCCTGCGGAAGATG
AACGTGGCTTTCGAGGAGCAGAACGCAGTGCTGCAGCGCCACACTCAGAGCATGAACAGCGCTCGTGAGCGTCTGGAGCAAGAGCTGGCGCTGGAGGAGCGGCGCACGCTGGCGCTGCAACAGCAACT
GCAGGCTGTGAGACAAGCGCTCACGGCTAGTTTCGCCTCTCTGCCGGTGCCCGGCACCGGGGAGACGCCGACGCTCGGAACGCTGGACTTCTACATGGCGCGGCTTCACGGAGCCATCGAGCGCGACC
CGGCGCAGCACGAGAGACTGATCGCGCGCGTCAAGGAGATCCTGGCGCGAGTAGCCAGCGAGCACCTGTGACAGGCCTCTTGGACCGGGAGACGCCCCTCCACACCCGCCCAGGAAGAAGCTGCACCT
TGGGGTCTCCAGACCCCCCTCAAATGAAATCTCAACTGCATCCCTTTAACCTCGAACCCCAACCCAGGTTGCAGAGCCCGGAAGACCTGCCTGCCTCACAGGGAGGGTCACAGTACAGTGGGTCAGGA
ACAGAGGAACCATGGCCTCCGGACTCAGATACCCCACCGCCACCCCTGATGAAGAGCAGGACCCTAGGCCACTCACCATACAGCCACTGGACCCACTGGGCAGGCGCTAACCAAGCAGCGCCGGGGTA
GGGGTGGGGTAGTCCAACAGCCCCTTACCCCACGCCTTTCATCACTCAATCCGGACTTTTAAATATGTGTCAATAAAAGCAAGTGAGTTTTCATTCAAGTTAA

hide sequence

RefSeq Acc Id:

XM_006240946 ⟹ XP_006241008

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,019,671 - 9,024,379 (+)	NCBI
mRatBN7.2	7	8,368,934 - 8,373,650 (+)	NCBI
Rnor_6.0	7	11,238,594 - 11,243,312 (+)	NCBI
Rnor_5.0	7	11,405,476 - 11,410,192 (+)	NCBI

Sequence:

show sequence

CCAATTGAAGCGCTAGGCTTGGGTTTATTAGCATGAGGGAGGAGCGGGCGCGGGCGCTTGGTTGGAGCGTCGCCGCATCCCAGGTCCCGGGAAAGTTTTTTCAGAGGACCCCCCCGGAGTGGCCATGT
CCCACGGTCCCCGGCAGCCAGGCGCAGCCACCGCACCTGCGGGAGGCAAGACTCCGGGCCAGCATGGGGCCTTTGTAGTGGCTGTCAAGCAGGAGCGCAGCGAAGGTCCCCGTGCCGGAGAGAAGGGG
CCCCAGGAGGAGGAGCCAGTGAAGAAGCGAGGCTGGCCCAAAGGCAAGAAAAGAAAGAAGATTCTCCCCAATGGGCCCAAGGCCCCGGTCACGGGCTATGTTCGCTTCCTGAACGAGAGGCGGGAGCA
GATTCGCACCCGACATCCGGACCTTCCCTTCCCGGAGATCACCAAGATGTTGGGCGCGGAGTGGAGCAAGCTGCAGCCAGCAGAGAAGCAGCGGTACCTGGATGAGGCAGAGAAGGAGAAACAGCAGT
ACTTGAAGGAGCTGTGGGCATACCAGCAGTCAGAGGCCTACAAGGTCTGCACCGAGAAGATCCAAGAAAACAAAATAAAAAAAGAGGACTCCAGCTCTGGGCTCATGAACACCCTCCTGAATGGACAC
AAGGGTGTGGACTGCGGCGATGGCTTTTCAACCTTTGATGTTCCCATCTTCACTGAAGAGTTTTTGGACCAAAACAAAGCACGCGAGGCAGAGCTGCGGCGCCTGCGGAAGATGAACGTGGCTTTCGA
GGAGCAGAACGCAGTGCTGCAGCGCCACACTCAGAGCATGAACAGCGCTCGTGAGCGTCTGGAGCAAGAGCTGGCGCTGGAGGAGCGGCGCACGCTGGCGCTGCAACAGCAACTGCAGGCTGTGAGAC
AAGCGCTCACGGCTAGTTTCGCCTCTCTGCCGGTGCCCGGCACCGGGGAGACGCCGACGCTCGGAACGCTGGACTTCTACATGGCGCGGCTTCACGGAGCCATCGAGCGCGACCCGGCGCAGCACGAG
AGACTGATCGCGCGCGTCAAGGAGATCCTGGCGCGAGTAGCCAGCGAGCACCTGTGACAGGCCTCTTGGACCGGGAGACGCCCCTCCACACCCGCCCAGGAAGAAGCTGCACCTTGGGGTCTCCAGAC
CCCCCTCAAATGAAATCTCAACTGCATCCCTTTAACCTCGAACCCCAACCCAGGTTGCAGAGCCCGGAAGACCTGCCTGCCTCACAGGGAGGGTCACAGTACAGTGGGTCAGGAACAGAGGAACCATG
GCCTCCGGACTCAGATACCCCACCGCCACCCCTGATGAAGAGCAGGACCCTAGGCCACTCACCATACAGCCACTGGACCCACTGGGCAGGCGCTAACCAAGCAGCGCCGGGGTAGGGGTGGGGTAGTC
CAACAGCCCCTTACCCCACGCCTTTCATCACTCAATCCGGACTTTTAAATATGTGTCAATAAAAGCAAGTGAGTTTTCATTCAAGTTAA

hide sequence

RefSeq Acc Id:

XM_063263714 ⟹ XP_063119784

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,019,670 - 9,024,379 (+)	NCBI

RefSeq Acc Id:

XM_063263716 ⟹ XP_063119786

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,019,670 - 9,024,379 (+)	NCBI

RefSeq Acc Id:

XM_063263717 ⟹ XP_063119787

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,019,670 - 9,024,379 (+)	NCBI

RefSeq Acc Id:

XM_063263718 ⟹ XP_063119788

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,019,671 - 9,024,379 (+)	NCBI

RefSeq Acc Id:

XM_063263719 ⟹ XP_063119789

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,019,671 - 9,024,379 (+)	NCBI

RefSeq Acc Id:

XM_063263720 ⟹ XP_063119790

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	9,019,909 - 9,024,379 (+)	NCBI


Protein RefSeqs	NP_001102201	(Get FASTA)	NCBI Sequence Viewer
	XP_006241006	(Get FASTA)	NCBI Sequence Viewer
	XP_006241008	(Get FASTA)	NCBI Sequence Viewer
	XP_063119784	(Get FASTA)	NCBI Sequence Viewer
	XP_063119786	(Get FASTA)	NCBI Sequence Viewer
	XP_063119787	(Get FASTA)	NCBI Sequence Viewer
	XP_063119788	(Get FASTA)	NCBI Sequence Viewer
	XP_063119789	(Get FASTA)	NCBI Sequence Viewer
	XP_063119790	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL89157	(Get FASTA)	NCBI Sequence Viewer
	EDL89158	(Get FASTA)	NCBI Sequence Viewer
	EDL89159	(Get FASTA)	NCBI Sequence Viewer
	EDL89160	(Get FASTA)	NCBI Sequence Viewer
	EDL89161	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000028002
	ENSRNOP00000028002.6
	ENSRNOP00000074794
	ENSRNOP00000074794.2

RefSeq Acc Id:

NP_001102201 ⟸ NM_001108731

- UniProtKB:

A6K887 (UniProtKB/TrEMBL), A6K890 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSHGPRQPGAATAPAGGKTPGQHGAFVVAVKQERSEGPRAGEKGPQEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQ
QYLKELWAYQQSEAYKVCTEKIQENKIKKEDSSSGLMNTLLNGHKGVDCGDGFSTFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMNSARERLEQELALEERRTLALQQQLQAV
RQALTASFASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHERLIARVKEILARVASEHL

hide sequence

RefSeq Acc Id:	XP_006241006 ⟸ XM_006240944
- Peptide Label:	isoform X6
- UniProtKB:	A6K890 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSHGPRQPGAATAPAGGKTPGQHGAFVVAVKQERSEGPRAGEKGPQEEEARPRPHAPDPAHSSQ SPSQGHSPLLQPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYKVCTEKIQENKIKKEDSSSGLMN TLLNGHKGVDCGDGFSTFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMNSARERLEQELALEERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLGTLDFYMARLHGAIER DPAQHERLIARVKEILARVASEHL hide sequence

RefSeq Acc Id:	XP_006241008 ⟸ XM_006240946
- Peptide Label:	isoform X8
- UniProtKB:	A6K887 (UniProtKB/TrEMBL), A6K890 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSHGPRQPGAATAPAGGKTPGQHGAFVVAVKQERSEGPRAGEKGPQEEEPVKKRGWPKGKKRKK ILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYKVCTEKIQENKIKKEDSSSGLMNTLLNGHKGVDCGDGFSTFDVPIFTEE FLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMNSARERLEQELALEERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHERLIARVKEILARVASEHL hide sequence

Ensembl Acc Id:

ENSRNOP00000028002 ⟸ ENSRNOT00000028002

Ensembl Acc Id:

ENSRNOP00000074794 ⟸ ENSRNOT00000086194

Protein Domains

HMG box

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A586-F1-model_v2	AlphaFold	D4A586	1-318	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13694983

Promoter ID:

EPDNEW_R5501

Type:

initiation region

Name:

Hmg20b_1

Description:

high mobility group 20 B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	11,238,649 - 11,238,709	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-35019	BioCyc
Ensembl Genes	ENSRNOG00000020601	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000028002	ENTREZGENE
	ENSRNOT00000028002.7	UniProtKB/TrEMBL
	ENSRNOT00000086194	ENTREZGENE
	ENSRNOT00000086194.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.30.10	UniProtKB/TrEMBL
InterPro	ChromReg_NeuronalGeneExpr	UniProtKB/TrEMBL
	HMG_box_dom_sf	UniProtKB/TrEMBL
	HMG_superfamily	UniProtKB/TrEMBL
KEGG Report	rno:362825	UniProtKB/TrEMBL
NCBI Gene	362825	ENTREZGENE
PANTHER	HIGH MOBILITY GROUP PROTEIN 2	UniProtKB/TrEMBL
	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY E MEMBER 1-RELATED	UniProtKB/TrEMBL
Pfam	HMG_box	UniProtKB/TrEMBL
PhenoGen	Hmg20b	PhenoGen
PRINTS	HIGHMOBLTY12	UniProtKB/TrEMBL
PROSITE	HMG_BOX_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000020601	RatGTEx
SMART	HMG	UniProtKB/TrEMBL
Superfamily-SCOP	HMG-box	UniProtKB/TrEMBL
UniProt	A0A0G2K8Z5	ENTREZGENE, UniProtKB/TrEMBL
	A6K887	ENTREZGENE, UniProtKB/TrEMBL
	A6K890	ENTREZGENE, UniProtKB/TrEMBL
	D4A586_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Hmg20b	high mobility group 20 B	Hmg20b_predicted	high mobility group 20 B (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Hmg20b_predicted	high mobility group 20 B (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message

Imported Disease Annotations - ClinVar