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Gene: Fyco1 (FYVE and coiled-coil domain autophagy adaptor 1) Rattus norvegicus

Analyze

Symbol:

Fyco1

Name:

FYVE and coiled-coil domain autophagy adaptor 1

RGD ID:

1309069

Description:

Predicted to enable zinc ion binding activity. Predicted to be involved in plus-end-directed vesicle transport along microtubule and positive regulation of autophagosome maturation. Predicted to be located in Golgi apparatus and endosome. Predicted to be active in autophagosome; late endosome; and lysosome. Human ortholog(s) of this gene implicated in cataract 18. Orthologous to human FYCO1 (FYVE and coiled-coil domain autophagy adaptor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

FYVE and coiled-coil domain containing 1; FYVE and coiled-coil domain-containing protein 1; LOC301085

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	132,289,538 - 132,356,810 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	132,289,539 - 132,356,451 (-)	Ensembl				GRCr8
mRatBN7.2	8	123,412,105 - 123,479,315 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	123,412,112 - 123,479,021 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	129,003,808 - 129,071,231 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	127,202,785 - 127,270,208 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	125,032,024 - 125,099,409 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	132,844,042 - 132,910,905 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	132,844,043 - 132,911,193 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	131,995,143 - 132,061,908 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	128,543,895 - 128,612,184 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	122,520,323 - 122,587,206 (-)	NCBI		Celera
RGSC_v3.1	8	128,566,529 - 128,632,267 (-)	NCBI
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cataract (ISO)

cataract 18 (ISO)

Eye Abnormalities (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

acrolein (ISO)

acrylamide (EXP,ISO)

aflatoxin B1 (EXP,ISO)

alpha-pinene (ISO)

arsenous acid (ISO)

benzatropine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cannabidiol (ISO)

carbon nanotube (ISO)

cefaloridine (EXP)

chlorpyrifos (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

Cuprizon (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dicrotophos (ISO)

dioxygen (ISO)

Enterolactone (ISO)

ethanol (ISO)

fenthion (ISO)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

glafenine (EXP)

ivermectin (ISO)

ketoconazole (EXP,ISO)

Licochalcone B (ISO)

methylmercury chloride (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (ISO)

rac-lactic acid (ISO)

rotenone (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

succimer (ISO)

sunitinib (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (EXP,ISO)

titanium dioxide (ISO)

topotecan (EXP)

triphenyl phosphate (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

plus-end-directed vesicle transport along microtubule (IBA,IEA,ISO)

positive regulation of autophagosome maturation (IBA,IEA,ISO)

Cellular Component

autophagosome (IBA,IEA,ISO)

cytoplasmic vesicle (IEA)

endosome (IEA)

late endosome (IBA,IEA,ISO)

lysosome (IBA,IEA,ISO)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19946888	PMID:20100911	PMID:26468287

Genomics

Comparative Map Data

Fyco1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	132,289,538 - 132,356,810 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	132,289,539 - 132,356,451 (-)	Ensembl				GRCr8
mRatBN7.2	8	123,412,105 - 123,479,315 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	123,412,112 - 123,479,021 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	129,003,808 - 129,071,231 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	127,202,785 - 127,270,208 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	125,032,024 - 125,099,409 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	132,844,042 - 132,910,905 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	132,844,043 - 132,911,193 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	131,995,143 - 132,061,908 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	128,543,895 - 128,612,184 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	122,520,323 - 122,587,206 (-)	NCBI		Celera
RGSC_v3.1	8	128,566,529 - 128,632,267 (-)	NCBI
Cytogenetic Map	8	q32	NCBI

FYCO1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	45,917,903 - 45,995,824 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	45,917,903 - 45,995,838 (-)	Ensembl			hg38	GRCh38
GRCh37	3	45,959,395 - 46,037,316 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	45,934,399 - 46,012,311 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	45,934,399 - 46,012,304	NCBI
Celera	3	45,897,023 - 45,974,921 (-)	NCBI		Celera
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	46,003,424 - 46,081,373 (-)	NCBI		HuRef
CHM1_1	3	45,909,364 - 45,987,237 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	45,933,786 - 46,011,702 (-)	NCBI		T2T-CHM13v2.0

Fyco1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	123,618,565 - 123,681,110 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	123,618,565 - 123,680,964 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	123,789,500 - 123,851,899 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	123,789,500 - 123,851,899 (-)	Ensembl			mm10	GRCm38
MGSCv37	9	123,698,628 - 123,761,020 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	123,638,208 - 123,700,267 (-)	NCBI		MGSCv36	mm8
Celera	9	124,237,925 - 124,300,275 (-)	NCBI		Celera
Cytogenetic Map	9	F4	NCBI
cM Map	9	74.52	NCBI

Fyco1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	26,019,514 - 26,074,492 (+)	Ensembl
ChiLan1.0	NW_004955420	26,019,621 - 26,076,846 (+)	NCBI	ChiLan1.0	ChiLan1.0

FYCO1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	45,882,811 - 45,960,720 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	45,887,576 - 45,965,488 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	45,825,670 - 45,903,595 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	46,932,148 - 47,009,676 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	46,932,148 - 47,009,676 (-)	Ensembl			panPan2	panpan1.1

FYCO1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	42,520,241 - 42,593,886 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	42,525,435 - 42,590,243 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	42,436,100 - 42,509,739 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	43,002,992 - 43,076,845 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	43,003,044 - 43,074,828 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	42,244,102 - 42,317,757 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	42,651,320 - 42,724,955 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	42,926,619 - 43,000,264 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Fyco1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	200,454,799 - 200,532,091 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	3,720 - 81,257 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	3,938 - 81,226 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FYCO1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	29,066,986 - 29,146,755 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	29,068,107 - 29,146,792 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	32,200,269 - 32,239,205 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FYCO1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	7,388,796 - 7,466,463 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	7,388,704 - 7,466,430 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	159,699,253 - 159,777,243 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fyco1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	74,923,027 - 74,982,990 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	74,923,072 - 74,982,882 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Fyco1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	114,892,119 - 114,959,137 (-)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	830
Count of miRNA genes:	293
Interacting mature miRNAs:	399
Transcripts:	ENSRNOT00000008630
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	102413464	132782436	Rat
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	105462581	132782436	Rat
634332	Pia18	Pristane induced arthritis QTL 18	4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	84192326	132782436	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat

Markers in Region

BQ205885

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	123,439,115 - 123,439,281 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	132,871,049 - 132,871,214	NCBI	Rnor6.0
Rnor_5.0	8	132,022,149 - 132,022,314	UniSTS	Rnor5.0
RGSC_v3.4	8	128,570,901 - 128,571,066	UniSTS	RGSC3.4
Celera	8	122,547,331 - 122,547,496	UniSTS
RH 3.4 Map	8	1333.2	UniSTS
Cytogenetic Map	8	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000008630 ⟹ ENSRNOP00000008630

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	132,289,539 - 132,356,451 (-)	Ensembl
mRatBN7.2 Ensembl	8	123,412,112 - 123,479,021 (-)	Ensembl
Rnor_6.0 Ensembl	8	132,844,043 - 132,910,905 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087799 ⟹ ENSRNOP00000073803

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	132,289,539 - 132,345,173 (-)	Ensembl
mRatBN7.2 Ensembl	8	123,412,112 - 123,467,743 (-)	Ensembl
Rnor_6.0 Ensembl	8	132,846,626 - 132,911,193 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000123167 ⟹ ENSRNOP00000104750

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	132,289,539 - 132,356,451 (-)	Ensembl

RefSeq Acc Id:

NM_001106870 ⟹ NP_001100340

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	132,289,539 - 132,356,451 (-)	NCBI
mRatBN7.2	8	123,412,112 - 123,479,021 (-)	NCBI
Rnor_6.0	8	132,844,043 - 132,910,905 (-)	NCBI
Rnor_5.0	8	131,995,143 - 132,061,908 (-)	NCBI
RGSC_v3.4	8	128,543,895 - 128,612,184 (-)	RGD
Celera	8	122,520,323 - 122,587,206 (-)	RGD

Sequence:

show sequence

CTCTCGCCAGAGGGGTTGGCTCCAATACCTAGGCTGTCTGTGGGGCCGTAGAAAGACCCTCAAT
ACTATCCCAAGATCTGAGCCGGCCGAGGGGGGTCACCCTGTGGAACCTCACGGTGAAGCCGCCC
TGTGAGGCGGAGCTTCGGCAGTTCTCCTGAAACCCTAGCACAGGAGCCAAACCCTAAAGTTCTC
GCGGTCAGTGTGGCTTAATCCCTAGAAAGCCAAAACCTCCTCTCTGCCTGATTCCTTACGCCCC
TTCGATCCAGGGAACACAGGCTTCCTTGCCCCACCTCCTGAAACCAGAAGGGGGCCATAGTACT
GAGTGAGTGAGAGCTGGTACATGTTAGACAGATTCAAGGTAACATGTTATTGTGAAATGCTGAA
GTTCAGGATAGTGCCACCATGGACTGTGACCATTGCTGACTGGCAGCCACACAGCACTGAAGTG
ATAACCTGCTTGGATCTACACGTGTAAGAAAGAGGAAAACTATGGCTTCTAGCAGCACTGAGAC
GCAGCTCCAGAGGATCATCCGTGATCTACAAGATGCAGTGACAGAACTAAGCAATGAATTTAAG
GAAGGCGGAGAACCAATCACAGATGACAGCACCAGCTTGCACAAGTTTTCTTACAAACTTGAGT
ATCTTCTGCAATTTGATCAGAAGGAGAAGGCTAGCCTCCTGGGTAGCAAGAAGGACTACTGGGA
TTACTTCTGTGCGTGCCTAGCCAAGGTGAAAGGAGCCAATGATGGGATTCGATTCGTCAGGTCC
ATCTCTGAGCTCCGAACATCTCTAGGAAAGGGGAGAGCCTTCATTCGCTACTCTTTGGTGCACC
AGAGGTTGGCAGACACCTTGCAGCAGTGCTTCATGAACACCAAAGTGACCAGTGACTGGTATTA
TGCAAGAAGCCCCTTTCTGAAGCCAAAGCTGAGCTCTGACATTGTGGGCCAGCTGTATGAGCTG
ACTGAGGTTCAGTTTGATCTAGCATCAAGAGGCTACGACTTGGATGCCGCCTGGCCAACATTTG
CCAGGAGGACGCTAGCCACCAGCTCTTCTTACATGTGGAAACCCCCCAGCCGAAGCTCCAGCAT
GAGTAGTTTAGTGAGCAACTACTTGCAGACTCAGGAGATGGCCTCCAGTCTTGACCTGAATAGT
TCTCTAAACAATGAAGCACTAGAAAGCTTCGATGAGATGCGGCTGGAGCTGGACCAGTTGGAGG
TTCGGGAGAAACAGCTACAAGAGCACGTGCAGCAGCTAAACAGGGAAAACCAAGCACTTCGAAT
GACGATCAGCAAGCAAGGGGGGCAACTTCAGGTAGAGAAGGAAACGGGGTACCTTGCAGTCGAG
GATAGCATTGACCTCGTGAGCCTGGTGGCAGAGCTCCAGAAGCAGGGGGAGGTCACCCAGGCCA
CAGTGAAGAAGCTACAGACATGTCTACAGGCTCTGGAGTTAGCTGTAGACCAGAAAGAGACCAG
CCACTCAGTCTTGCAGCTTGAGAACGTGGCACAGGCACTTGACGCTGTGAGAGACTCCTTGGGT
AGGAAGAACCAGCTTCTAGCCAGCCTTTCTGAATGCCTCACTAGGGCTGAAAAAAGGGAACATC
CATCTCTGGACACAAAGCTTCATCAAGAGCCAGTTCCTACTGACCTGGCCCTGAAGTTCCAGGA
GCTGAAGGGAAAACTTCAAACCCTAGAAGGAGAGAACACCAAGGCCCAGGAGCTAAACAGGCAG
CAAAGTCTCAAGCTAGAGCAGCTGGCCAAGGAGCTGCAGCTGAAGGAGGAAGCCCGAGCTAGCC
TGGAACACTTAGTGAAGGATGCGGTCCCACTTCAGGAAGAGCTATCCGGAAAGAAGCAAGAGTC
AGCTCAGCTCCGACGACAGCTTCAGGAATCCCTGGCCCACTTGAGCTCTGTGGAGGAGGAGCTG
GCTGAAGCCAGACAGCAGGAAAAGCAGCATCGAGAAGAAAAACAGCTACTAGAGCAGGAGGCCA
AGTCTCTGACATGGCAGCTGCAGCTCCTAGAGACCCAACTAGGACAGGTGAGTCAGCTTGTGAG
TGACCTGGAGGAGCAGAAGAAGCAACTCATGCAGGACAAAGACCATCTCAGCCAGAAAGTAGGA
ACACTAGAGCAGCTAGCTGAGGCCCATGGGGCAAGTAAGAGTAAAGAGGCTGTCCCACCACAGG
CTGGGGAGATGCCAGAAAAGGGGCAGCACTGCCTCCAGGAAGAACAGGTAAACAATGCCACAGT
GCGAGGGGCAGACCAGGACGAGTTACAAAAGGTCAACCAGGAGCTACAGAAGGAGCTGCAGAAC
ATGGCTGTGCGCAACCAGCTCCTAGAAGGCAAACTGCAGGCCTTGCAAACTGATTACAAGGCAC
TGCAGCAGCGAGAGGCAGCAATCCAGGGCTCTTTAGCCTCCCTGGAAGCTGAGCAGGCCAGCAT
CCGGCAGCTGGGAAACCAGATGGAAGCAAGCCTCCTGGCTGTGAGGAAAGCCAAAGAGACTATG
AAGGCCCAGGTGGCAGAGAAGGAGGCTGCCCTGCAGAGTAAGGAGGGCGAGTGCCGGCAGCTGC
AGGAAGAGGCAGAGCAGTGCCGGCTTCGGACAGAGGCCCAGGCCCAGGAGCTCAGAGCTCTTGA
GAACCAGTGCCAGCAGCAGATTCAACTGATTGAGGTCCTCTCTGCAGAAAAAGGCCAACAGGGA
CTCAGCCTACCCCAGGTCAACACAGCCCAACTGGCCCTGTCTCAAGCACAGCTTGAAATTCACC
AGGGGGAAGCCCAGCGGTTACAGAATGAGGTGGTGGACCTCCAGGCCAAGCTCCAGGTGGCCCT
AGGTGATCGAGACAAGTTACAGAGCCAACTGGGTGTGGCTGAGGCAGTTCTCGGGGAGCACAAG
ACCCTGGTGCAACAACTGAAAGAACAGAATGAAGCCCTCAACAGGGCCCATATTCAGGAGCTGC
TGCAGTGCTCAGAGAGAGAGGGGATACTGCAGGAGGAGAGCATCTACAAGGCCCAGAAGCAGGA
GCAAGAGCTACGAGCCCTGCAGGCAGAGCTGTCACAGGTGAGGTGCAGCTCTGAGGGAGCCCAC
CTGGAGCATGCAGAGCTACAGGACCAGCTGCACCGAGCCAACACAGACACAGCTGAGCTAGGCA
TACAGGTCTGTGCACTGACAGCTGAGAAGGATCGGATGGAGGGGGCCCTGGCCAGCCTAGCCCA
GGAGCTCCAGGACTCCAAAGAAGCAGCACTACAGGAACGAAAGGGCTTAGAGCTCCAAGTGATG
CAACTTCAGCAAGAGAAGGAGAGCTTGCAGGAAAAGCTGAAGGCAACTGAGGAGGCAGCCAGTT
CATTCTCTGTTCTTCAGGCACAGCTGGCCCAGGCTGAGCAGCTGGCCCAGAGCCTCCAAGAGGC
TGCACACCAGGAACAAGATGCCCTTAAGTTCCAGCTAAGTGCTGAGATTATGGACCACCAGAAC
AGACTAAAGACAGCCAATGAAGAGTGTGGGAGCCTCAGGGCCCAGCTAGAAGAACAAGGCCAGG
AGCTGCAAATGACTAAGGAGGCTGTGCAGGAACTGAAGATCACCAAGGCGACCATGGAGGAGAA
GCTGAATTGCACCGGTAGCCACCTTGCAGAGTGCCAGGCCACTTTGCTACGCAAAGATGAAGAA
AGCGCTATGCTTCGAATCAACCTAGAGAGAACACAGAAGGAACTTGAAAAGGCTACATCAAAAT
TCCAAGAATATTACAACAAACTCTGCCAGGAGGTGACAAACAGGGAAAGGAATGACCAGAAGAT
GCTTGCAGACCTAGATGACCTGAACAGAACCAAGAAATACCTTGAGGAGCGGCTGATAGAGCTG
CTCAGGGACAAAGATGCTCTCTGGCAAAAGTCCGATGCACTGGAATTCCAGCAGAAGCTCAGTG
CTGAAGAGAAATGTCTTGGGGACATGGAGGCCAACCACTGCCATGACTGCAAGCGGGAGTTCAG
CTGGATAGTGCGGCGGCACCACTGCAGGTTATGTGGCCGAATATTCTGTTACTACTGCTGTAAC
AACTATGTTGTGACTAAGCCCAGTGGCAAGAAGGAACGGTGCTGCCGAGCCTGCTTCCAGAAGT
TTGGTGAAAGCTCTGGATCCCCTGACAGCAGTGGTTCGGGCACTAGCCAGGGAGAGCCCAGCCC
CATGGTGTCACCAGCTGAAGCAGCTCCCCAGTCCATAGGAAGCCAAGGAATAAACCCAGTCTGC
AGACCACCAGATGATGCTGTGTTTGACATCATCACCGATGAGGAACTGTGCCAGATCCAAGAAT
CTGGCTCCTCCTTGCCTGAAACACCCACCGAAACTGATTCGATGGACCCAAATATGGCTGAACA
GGACACCACATCAAACTCATTAACCCCTGAAGACACTGAAGACATGCCCCTGGGGCAGGATGCT
GAAATCTGCTTGCTGAAGTCAGGAGAGCTGATGATCAAATTACCCCTCACAGTAGAGGAGATCG
CCAGCTTTGGGGAGGGAAACAGGGAGCTGTTTGTGAGGTCCAGTACCTACAGCCTGATCCCCAT
CACCGTGGCTGAGCCCGGCCTTACCATCAGCTGGGTCTTCTCTTCTGATCCCAAGAGCATCTCC
TTCAGTGTGGTCTTCCAAGAGACAGAAGACACGCCACTCGACCAGTGCAAGGTCCTCATTCCCA
CCACACGCTGCAATTCCCACAAGGAGAGCATCCGGGGCCAGCTGAAGGTCCGAACCCCTGGCAT
CTACTTGCTCATCTTTGACAACACCTTTTCCAGATTTATCTCCAAAAAAGTATTTTACCACCTG
ACCGTTGACCGGCCTGTGATCTACGATGGAAGTGATTTCCCATAGCATCAGTACCTGAACTGTA
ATTAGCTCTTCACCATCCACAGGAGACACTACTCCTCCTCACCTATCTCATCAAACATGTACAC
ACACTCTCATCCACAAAATTTTAAATGTTAAAAAATTAGAAGCAAAGGAAAGAAAATCAGCTGT
GCCCCAGCTCAGCAGTTCTGAAGCTCTGACAGAAGCCTTGGGCTCCACAATGTGCATGGCTCCA
TGCAGCCATTACTCTCAAGTCCCAGAGCTCCTAAGAACAAGATACAAGACTCAACTGTCTTCTC
ACCCAAAGGCACACCATTAGCCTCACCTGGGATCACAGTCGGTAACAATCTACTGTGTGATATT
TTTCAGGCCAGAAGTGGTTTTGATAGCATATCTACTCTCAACAGCCAGAATTATAGGCCAAGGG
CCACTGCGCTGGCCACGTTGTGAAGCCTTGGGTAGTTCTGGGAGAAAAACACTACAGGGCCATC
ATGTCAGAGATGCCCCTGTCCCTTAATTTCCCCATAAGTGGGGGCTGCTTCTTCCGCTCAGCAA
TCTTGGGGAGGCCTGAGTTATGCTGTTCTTCTGAGCCTTTGTCTGCTCGGGGCCTTTGCTCACC
AAGATCATTAGATCTAAATAACCTCCCTTCGCCCCCCACCCCAACTCACAGACACTCAGGAACC
AACCAGAGGTTTAGGAAAAAGCAACTCCCACATGAAGGATTCAGCTCTGCATATGGACAGTGGG
AGTGCAAATACGGCTAAGTTCCCTACCGTGGAACTCAAGTTGGCACCAAAGCTCATGTGTTGCC
TATGCCCATCTTTGATTATAAACTAGACTGTCTGCCTCAGCTGCAGACAGTTGTTTACTGATGA
GCAGAGCTGGTGTAAGAACTACTTTCAGTACCTGGAACCTTTCTATTAAAAAGTCTTTGGTAAC
TTAAGAAACAATGTAGTGGAAGAATGGGGCGTAACTTCCGTTTGCCCTCCACCTCCCAGTCCCT
CCCTCCCCATCTGTCTGCTTCCTTCTAGTCAGCTCACATCTGACACTGCAGACAGTTTACTGTT
TCCTTTTCTAGGACAGGCAAATAGATAGCTTCCTGTTGTTCTCTGTGGCCCTTTTTTACTCCTA
CCAACAAAAATTCACCCTTGATGGCGATTTTGTTCAGTGTGAGGCCAGCATGTGCAGCTGAGCC
TTCAAAAACTGTCCTGGGTCCTTGTAGGTCTGTATGCGGCCTGAGATTGCTGAAGGCCAAATCA
TCTTACCTTTGAACCCTATACCCTCTTGCAAATGGAATGTTGAAGCCAGCTTGTTCGCTAGGCC
AACAGCACCCAACACCAAAGAGGATCTCATCTTTATTGCTTGGCTTTTCCAGGGTATACTGGAG
ACACTGGCCAAACTCATGGCTTTCTGCTGGTGTCACTGCCACCATCTTCATCAAGAGCCATCAT
TCACTGAGTTGCTGCTGTGTTGGTGGTCTGGGAGGGGCCTGAGACCTTACATTTGCGTTCACCC
TGAACTCTGTCACTCATCAGGAGGTCCATGTGGTTCTTGTGAAGCTCAGACCTGAGTCGAGAGG
CTCCAGTGCTGACTGCGTAGAACTCCACTGGGCGCACACCGACTCTGTTTTTAATAGCATACTT
TTGGCTAAATGGGCTTTGTACTGTCCGTGTTCTGGTTTTCTGAGCACTAGCTTACTAGAGAACG
TTCGGCCCTGTGTCAGTGCCTTTCATGCATAGCTTTGCTTTAAGTCGTTCCCAATTTTACTGAG
GTTCAGTCATTGGAGTAAGTTTTTGAAAAATGCAGTGACAACTGAAGAATCACTAAGGAAGATG
GTTGACCCAGCTGGACGTAATTACACTAAAGACCATAAGGAAACATCCTTGAGATCCTGGGTGA
TTCATAACAGTCGTGTTAGTAGCATTGCCAGCTGCCTGTTCACCAGTACCACTGAAGCACTACT
AGACTTCACCCAAGGAATGAACTAGCCACTCAGACACAGTGGCCCTCCATGTCCAAATGGACTT
GAAGAGTATTGCTGACAGAAGCACCCAGGATTCTAGCTAGTCCTAAAGCAATAGCAGGCAAAGG
AATTCCCAAACAGGAATCTGGAACTGGAAATCTCCATATCTTTTTGGAAGTGGGAATGAAGAGC
CATATATAAATAAAGATGTTATTTCTGAACAATTTCAATTGTTCCCCAGGTAATCAAGCACCTC
CTGGCCCAAAAAGAAGGAAATCTTCTTATAGATATGGTTTGATGTTCATAGTTTTGTTTTTAAA
CTGAGACTTGGTTCAGTCTGTGAGAATTCTTTAAACCGAGAGCAAACATTCTTGGCTCACAGGT
TTTGGAGAAGGAGGCAGAGAGGAGAGTTCTTTGGAGAGACATCTTTGACTCCTCAGAACCAGGG
AGTGCAATACAAAGACTGAGTGCTGCTCACATTCACAGAAACAGACACTACTTGGTAGAATCTT
AGCACAATTTCCTCATGTTACTTAATTTCTTCTAAGGAAACAGGAAAGTTAATTCATAATTTCC
TTTTTCCTCTCAAGCACTTTTTAAATTTCAGGAGACCTCTCTGATCAAGGGGCATTTTTTAGAG
CCTTTTGATGTGTGTTTAATCTCAGTGTTCTACTTTTGGTGACTGCAGTGACACTGAGCCTCCA
TGGGAAGGCTTAACAGTTAGAGTGCACTTTAATTCATTAATCCTCGCTTTATGTGGCCTTATAA
GATAATGGGTCAGGGAACCCATTTTATTCTTACCTGCCAAAGAGTTACACAGAAACACATCAAA
CACCAGCACTTCATCTGCACAAAGGGATGAGACTTTGGTATCTCTGAGTGTACTTCTTTAATAG
TGTGTGCTATGCCATTTGGAAATGTTTTTAACCTCAGGTTTTAAATAAAGCAAACACTGTGGC

hide sequence

RefSeq Acc Id:

XM_017595602 ⟹ XP_017451091

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	132,289,538 - 132,347,904 (-)	NCBI
mRatBN7.2	8	123,412,105 - 123,470,540 (-)	NCBI
Rnor_6.0	8	132,844,042 - 132,903,293 (-)	NCBI

Sequence:

show sequence

ATGACTCTAACTTGTGTCAAATTGACATAAACTAGCAAGTACAATAGCTCAGCTTAAGCAAAAC
TGGACTGTGCCTTGTGAGCCTCTCTACCTGGAGAAACACTGGGACAAGAAACAGACTTCTCATA
AACTGCTCCTATGTCTAGTCTATTATCCTCGATGAATGGTACCAGTGCTTGTTAGGGGCCTTTA
CTGTGATCTGACTCTTTCTTTCTGGGCCTGAGAAGCTCTCTGTGTTTTCACTGAGTCACAACTG
TGCTGGCTTGTGAGTTAAAAATAGACCCTAGGCATCTGTTTAGTGACAAGCCTCTGCTGACCTG
ACCAGTCACTCTAATGCTTATAAATATTTGGAGTTGTTTATGGGTTAGTTGCCATTTCCTTTCC
AGGGCTTCCTTGCCCCACCTCCTGAAACCAGAAGGGGGCCATAGTACTGAGTGAGTGAGAGCTG
GTACATGTTAGACAGATTCAAGGTAACATGTTATTGTGAAATGCTGAAGTTCAGGATAGTTCCT
AGGAGCCAGTAGAGCCAGTAGAACTTTGGTCATTTTCTGTAGTGATAATTGTGCTGTCTTACTG
GTTCAGCGGGATTTACTGAAAAAAACCCAGGTTTGAAATCACATAGAAGAGAAATCAAGCCAAT
TCTACTCATTTGCCCTAGGCCTTAGGTTACAGAGCATCAGGTAGGAAAGGTGTTTACCATACCA
TGATGACTGTGAAAAGTGCTGTGTGAAATATGTACCAGAGCCCTGGGAAGGCTCTCAGTAATAT
GGCTGCTACTGTCCTTACAGCAGACATTGTGCCTTTGCACAGAATACTTAAAGGGCAAATTAAA
GCTTCCTAAAGGCCTGATGTCCAATTGTGTGGTCAGAACTCTTCCAGGTAGGTATTCATGTCTC
TTTTTGTTGGTCTTCAAACATACTGTGACCTTAAATGACATTAAACAGCTGCCCAAGAAGTGCC
AGCTGTAAACTCTCCAGCTGGAGAAAACCATGACTGAGCTTAAAATAGGACCTTGTCTCTGGTC
TGATGGGAGGGCTATGCAGGCCCAAGGGTGGTATGTCAAGCAATATTTTCACTCTCAGGCTAGC
CAAACATGAGGAAGAGGAGGTTCAAACCTCTGATAATAGAAGAGCCACCTTTTACTAGGTATGC
CAGGCTGTTCCTGTCAGAAGCCCTAGGGTGCCACCATGGACTGTGACCATTGCTGACTGGCAGC
CACACAGCACTGAAGTGATAACCTGCTTGGATCTACACGTGTAAGAAAGAGGAAAACTATGGCT
TCTAGCAGCACTGAGACGCAGCTCCAGAGGATCATCCGTGATCTACAAGATGCAGTGACAGAAC
TAAGCAATGAATTTAAGGAAGGCGGAGAACCAATCACAGATGACAGCACCAGCTTGCACAAGTT
TTCTTACAAACTTGAGTATCTTCTGCAATTTGATCAGAAGGAGAAGGCTAGCCTCCTGGGTAGC
AAGAAGGACTACTGGGATTACTTCTGTGCGTGCCTAGCCAAGGTGAAAGGAGCCAATGATGGGA
TTCGATTCGTCAGGTCCATCTCTGAGCTCCGAACATCTCTAGGAAAGGGGAGAGCCTTCATTCG
CTACTCTTTGGTGCACCAGAGGTTGGCAGACACCTTGCAGCAGTGCTTCATGAACACCAAAGTG
ACCAGTGACTGGTATTATGCAAGAAGCCCCTTTCTGAAGCCAAAGCTGAGCTCTGACATTGTGG
GCCAGCTGTATGAGCTGACTGAGGTTCAGTTTGATCTAGCATCAAGAGGCTACGACTTGGATGC
CGCCTGGCCAACATTTGCCAGGAGGACGCTAGCCACCAGCTCTTCTTACATGTGGAAACCCCCC
AGCCGAAGCTCCAGCATGAGTAGTTTAGTGAGCAACTACTTGCAGACTCAGGAGATGGCCTCCA
GTCTTGACCTGAATAGTTCTCTAAACAATGAAGCACTAGAAAGCTTCGATGAGATGCGGCTGGA
GCTGGACCAGTTGGAGGTTCGGGAGAAACAGCTACAAGAGCACGTGCAGCAGCTAAACAGGGAA
AACCAAGCACTTCGAATGACGATCAGCAAGCAAGGGGGGCAACTTCAGGTAGAGAAGGAAACGG
GGTACCTTGCAGTCGAGGATAGCATTGACCTCGTGAGCCTGGTGGCAGAGCTCCAGAAGCAGGG
GGAGGTCACCCAGGCCACAGTGAAGAAGCTACAGACATGTCTACAGGCTCTGGAGTTAGCTGTA
GACCAGAAAGAGACCAGCCACTCAGTCTTGCAGCTTGAGAACGTGGCACAGGCACTTGACGCTG
TGAGAGACTCCTTGGGTAGGAAGAACCAGCTTCTAGCCAGCCTTTCTGAATGCCTCACTAGGGC
TGAAAAAAGGGAACATCCATCTCTGGACACAAAGCTTCATCAAGAGCCAGTTCCTACTGACCTG
GCCCTGAAGTTCCAGGAGCTGAAGGGAAAACTTCAAACCCTAGAAGGAGAGAACACCAAGGCCC
AGGAGCTAAACAGGCAGCAAAGTCTCAAGCTAGAGCAGCTGGCCAAGGAGCTGCAGCTGAAGGA
GGAAGCCCGAGCTAGCCTGGAACACTTAGTGAAGGATGCGGTCCCACTTCAGGAAGAGCTATCC
GGAAAGAAGCAAGAGTCAGCTCAGCTCCGACGACAGCTTCAGGAATCCCTGGCCCACTTGAGCT
CTGTGGAGGAGGAGCTGGCTGAAGCCAGACAGCAGGAAAAGCAGCATCGAGAAGAAAAACAGCT
ACTAGAGCAGGAGGCCAAGTCTCTGACATGGCAGCTGCAGCTCCTAGAGACCCAACTAGGACAG
GTGAGTCAGCTTGTGAGTGACCTGGAGGAGCAGAAGAAGCAACTCATGCAGGACAAAGACCATC
TCAGCCAGAAAGTAGGAACACTAGAGCAGCTAGCTGAGGCCCATGGGGCAAGTAAGAGTAAAGA
GGCTGTCCCACCACAGGCTGGGGAGATGCCAGAAAAGGGGCAGCACTGCCTCCAGGAAGAACAG
GTAAACAATGCCACAGTGCGAGGGGCAGACCAGGACGAGTTACAAAAGGTCAACCAGGAGCTAC
AGAAGGAGCTGCAGAACATGGCTGTGCGCAACCAGCTCCTAGAAGGCAAACTGCAGGCCTTGCA
AACTGATTACAAGGCACTGCAGCAGCGAGAGGCAGCAATCCAGGGCTCTTTAGCCTCCCTGGAA
GCTGAGCAGGCCAGCATCCGGCAGCTGGGAAACCAGATGGAAGCAAGCCTCCTGGCTGTGAGGA
AAGCCAAAGAGACTATGAAGGCCCAGGTGGCAGAGAAGGAGGCTGCCCTGCAGAGTAAGGAGGG
CGAGTGCCGGCAGCTGCAGGAAGAGGCAGAGCAGTGCCGGCTTCGGACAGAGGCCCAGGCCCAG
GAGCTCAGAGCTCTTGAGAACCAGTGCCAGCAGCAGATTCAACTGATTGAGGTCCTCTCTGCAG
AAAAAGGCCAACAGGGACTCAGCCTACCCCAGGTCAACACAGCCCAACTGGCCCTGTCTCAAGC
ACAGCTTGAAATTCACCAGGGGGAAGCCCAGCGGTTACAGAATGAGGTGGTGGACCTCCAGGCC
AAGCTCCAGGTGGCCCTAGGTGATCGAGACAAGTTACAGAGCCAACTGGGTGTGGCTGAGGCAG
TTCTCGGGGAGCACAAGACCCTGGTGCAACAACTGAAAGAACAGAATGAAGCCCTCAACAGGGC
CCATATTCAGGAGCTGCTGCAGTGCTCAGAGAGAGAGGGGATACTGCAGGAGGAGAGCATCTAC
AAGGCCCAGAAGCAGGAGCAAGAGCTACGAGCCCTGCAGGCAGAGCTGTCACAGGTGAGGTGCA
GCTCTGAGGGAGCCCACCTGGAGCATGCAGAGCTACAGGACCAGCTGCACCGAGCCAACACAGA
CACAGCTGAGCTAGGCATACAGGTCTGTGCACTGACAGCTGAGAAGGATCGGATGGAGGGGGCC
CTGGCCAGCCTAGCCCAGGAGCTCCAGGACTCCAAAGAAGCAGCACTACAGGAACGAAAGGGCT
TAGAGCTCCAAGTGATGCAACTTCAGCAAGAGAAGGAGAGCTTGCAGGAAAAGCTGAAGGCAAC
TGAGGAGGCAGCCAGTTCATTCTCTGTTCTTCAGGCACAGCTGGCCCAGGCTGAGCAGCTGGCC
CAGAGCCTCCAAGAGGCTGCACACCAGGAACAAGATGCCCTTAAGTTCCAGCTAAGTGCTGAGA
TTATGGACCACCAGAACAGACTAAAGACAGCCAATGAAGAGTGTGGGAGCCTCAGGGCCCAGCT
AGAAGAACAAGGCCAGGAGCTGCAAATGACTAAGGAGGCTGTGCAGGAACTGAAGATCACCAAG
GCGACCATGGAGGAGAAGCTGAATTGCACCGGTAGCCACCTTGCAGAGTGCCAGGCCACTTTGC
TACGCAAAGATGAAGAAAGCGCTATGCTTCGAATCAACCTAGAGAGAACACAGAAGGAACTTGA
AAAGGCTACATCAAAATTCCAAGAATATTACAACAAACTCTGCCAGGAGGTGACAAACAGGGAA
AGGAATGACCAGAAGATGCTTGCAGACCTAGATGACCTGAACAGAACCAAGAAATACCTTGAGG
AGCGGCTGATAGAGCTGCTCAGGGACAAAGATGCTCTCTGGCAAAAGTCCGATGCACTGGAATT
CCAGCAGAAGCTCAGTGCTGAAGAGAAATGTCTTGGGGACATGGAGGCCAACCACTGCCATGAC
TGCAAGCGGGAGTTCAGCTGGATAGTGCGGCGGCACCACTGCAGGTTATGTGGCCGAATATTCT
GTTACTACTGCTGTAACAACTATGTTGTGACTAAGCCCAGTGGCAAGAAGGAACGGTGCTGCCG
AGCCTGCTTCCAGAAGTTTGGTGAAAGCTCTGGATCCCCTGACAGCAGTGGTTCGGGCACTAGC
CAGGGAGAGCCCAGCCCCATGGTGTCACCAGCTGAAGCAGCTCCCCAGTCCATAGGAAGCCAAG
GAATAAACCCAGTCTGCAGACCACCAGATGATGCTGTGTTTGACATCATCACCGATGAGGAACT
GTGCCAGATCCAAGAATCTGGCTCCTCCTTGCCTGAAACACCCACCGAAACTGATTCGATGGAC
CCAAATATGGCTGAACAGGACACCACATCAAACTCATTAACCCCTGAAGACACTGAAGACATGC
CCCTGGGGCAGGATGCTGAAATCTGCTTGCTGAAGTCAGGAGAGCTGATGATCAAATTACCCCT
CACAGTAGAGGAGATCGCCAGCTTTGGGGAGGGAAACAGGGAGCTGTTTGTGAGGTCCAGTACC
TACAGCCTGATCCCCATCACCGTGGCTGAGCCCGGCCTTACCATCAGCTGGGTCTTCTCTTCTG
ATCCCAAGAGCATCTCCTTCAGTGTGGTCTTCCAAGAGACAGAAGACACGCCACTCGACCAGTG
CAAGGTCCTCATTCCCACCACACGCTGCAATTCCCACAAGGAGAGCATCCGGGGCCAGCTGAAG
GTCCGAACCCCTGGCATCTACTTGCTCATCTTTGACAACACCTTTTCCAGATTTATCTCCAAAA
AAGTATTTTACCACCTGACCGTTGACCGGCCTGTGATCTACGATGGAAGTGATTTCCCATAGCA
TCAGTACCTGAACTGTAATTAGCTCTTCACCATCCACAGGAGACACTACTCCTCCTCACCTATC
TCATCAAACATGTACACACACTCTCATCCACAAAATTTTAAATGTTAAAAAATTAGAAGCAAAG
GAAAGAAAATCAGCTGTGCCCCAGCTCAGCAGTTCTGAAGCTCTGACAGAAGCCTTGGGCTCCA
CAATGTGCATGGCTCCATGCAGCCATTACTCTCAAGTCCCAGAGCTCCTAAGAACAAGATACAA
GACTCAACTGTCTTCTCACCCAAAGGCACACCATTAGCCTCACCTGGGATCACAGTCGGTAACA
ATCTACTGTGTGATATTTTTCAGGCCAGAAGTGGTTTTGATAGCATATCTACTCTCAACAGCCA
GAATTATAGGCCAAGGGCCACTGCGCTGGCCACGTTGTGAAGCCTTGGGTAGTTCTGGGAGAAA
AACACTACAGGGCCATCATGTCAGAGATGCCCCTGTCCCTTAATTTCCCCATAAGTGGGGGCTG
CTTCTTCCGCTCAGCAATCTTGGGGAGGCCTGAGTTATGCTGTTCTTCTGAGCCTTTGTCTGCT
CGGGGCCTTTGCTCACCAAGATCATTAGATCTAAATAACCTCCCTTCGCCCCCCACCCCAACTC
ACAGACACTCAGGAACCAACCAGAGGTTTAGGAAAAAGCAACTCCCACATGAAGGATTCAGCTC
TGCATATGGACAGTGGGAGTGCAAATACGGCTAAGTTCCCTACCGTGGAACTCAAGTTGGCACC
AAAGCTCATGTGTTGCCTATGCCCATCTTTGATTATAAACTAGACTGTCTGCCTCAGCTGCAGA
CAGTTGTTTACTGATGAGCAGAGCTGGTGTAAGAACTACTTTCAGTACCTGGAACCTTTCTATT
AAAAAGTCTTTGGTAACTTAAGAAACAATGTAGTGGAAGAATGGGGCGTAACTTCCGTTTGCCC
TCCACCTCCCAGTCCCTCCCTCCCCATCTGTCTGCTTCCTTCTAGTCAGCTCACATCTGACACT
GCAGACAGTTTACTGTTTCCTTTTCTAGGACAGGCAAATAGATAGCTTCCTGTTGTTCTCTGTG
GCCCTTTTTTACTCCTACCAACAAAAATTCACCCTTGATGGCGATTTTGTTCAGTGTGAGGCCA
GCATGTGCAGCTGAGCCTTCAAAAACTGTCCTGGGTCCTTGTAGGTCTGTATGCGGCCTGAGAT
TGCTGAAGGCCAAATCATCTTACCTTTGAACCCTATACCCTCTTGCAAATGGAATGTTGAAGCC
AGCTTGTTCGCTAGGCCAACAGCACCCAACACCAAAGAGGATCTCATCTTTATTGCTTGGCTTT
TCCAGGGTATACTGGAGACACTGGCCAAACTCATGGCTTTCTGCTGGTGTCACTGCCACCATCT
TCATCAAGAGCCATCATTCACTGAGTTGCTGCTGTGTTGGTGGTCTGGGAGGGGCCTGAGACCT
TACATTTGCGTTCACCCTGAACTCTGTCACTCATCAGGAGGTCCATGTGGTTCTTGTGAAGCTC
AGACCTGAGTCGAGAGGCTCCAGTGCTGACTGCGTAGAACTCCACTGGGCGCACACCGACTCTG
TTTTTAATAGCATACTTTTGGCTAAATGGGCTTTGTACTGTCCGTGTTCTGGTTTTCTGAGCAC
TAGCTTACTAGAGAACGTTCGGCCCTGTGTCAGTGCCTTTCATGCATAGCTTTGCTTTAAGTCG
TTCCCAATTTTACTGAGGTTCAGTCATTGGAGTAAGTTTTTGAAAAATGCAGTGACAACTGAAG
AATCACTAAGGAAGATGGTTGACCCAGCTGGACGTAATTACACTAAAGACCATAAGGAAACATC
CTTGAGATCCTGGGTGATTCATAACAGTCGTGTTAGTAGCATTGCCAGCTGCCTGTTCACCAGT
ACCACTGAAGCACTACTAGACTTCACCCAAGGAATGAACTAGCCACTCAGACACAGTGGCCCTC
CATGTCCAAATGGACTTGAAGAGTATTGCTGACAGAAGCACCCAGGATTCTAGCTAGTCCTAAA
GCAATAGCAGGCAAAGGAATTCCCAAACAGGAATCTGGAACTGGAAATCTCCATATCTTTTTGG
AAGTGGGAATGAAGAGCCATATATAAATAAAGATGTTATTTCTGAACAATTTCAATTGTTCCCC
AGGTAATCAAGCACCTCCTGGCCCAAAAAGAAGGAAATCTTCTTATAGATATGGTTTGATGTTC
ATAGTTTTGTTTTTAAACTGAGACTTGGTTCAGTCTGTGAGAATTCTTTAAACCGAGAGCAAAC
ATTCTTGGCTCACAGGTTTTGGAGAAGGAGGCAGAGAGGAGAGTTCTTTGGAGAGACATCTTTG
ACTCCTCAGAACCAGGGAGTGCAATACAAAGACTGAGTGCTGCTCACATTCACAGAAACAGACA
CTACTTGGTAGAATCTTAGCACAATTTCCTCATGTTACTTAATTTCTTCTAAGGAAACAGGAAA
GTTAATTCATAATTTCCTTTTTCCTCTCAAGCACTTTTTAAATTTCAGGAGACCTCTCTGATCA
AGGGGCATTTTTTAGAGCCTTTTGATGTGTGTTTAATCTCAGTGTTCTACTTTTGGTGACTGCA
GTGACACTGAGCCTCCATGGGAAGGCTTAACAGTTAGAGTGCACTTTAATTCATTAATCCTCGC
TTTATGTGGCCTTATAAGATAATGGGTCAGGGAACCCATTTTATTCTTACCTGCCAAAGAGTTA
CACAGAAACACATCAAACACCAGCACTTCATCTGCACAAAGGGATGAGACTTTGGTATCTCTGA
GTGTACTTCTTTAATAGTGTGTGCTATGCCATTTGGAAATGTTTTTAACCTCAGGTTTTAAATA
AAGCAAACACTGTGGCA

hide sequence

RefSeq Acc Id:

XM_039081318 ⟹ XP_038937246

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	132,289,538 - 132,356,810 (-)	NCBI
mRatBN7.2	8	123,412,105 - 123,479,315 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100340	(Get FASTA)	NCBI Sequence Viewer
	NP_001420197	(Get FASTA)	NCBI Sequence Viewer
	XP_017451091	(Get FASTA)	NCBI Sequence Viewer
	XP_038937246	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL76750	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000008630
	ENSRNOP00000008630.5
	ENSRNOP00000073803
	ENSRNOP00000073803.2
	ENSRNOP00000104750.1

RefSeq Acc Id:

NP_001100340 ⟸ NM_001106870

- UniProtKB:

D3Z9D2 (UniProtKB/TrEMBL), A6I4C6 (UniProtKB/TrEMBL), A0A0G2K6G5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASSSTETQLQRIIRDLQDAVTELSNEFKEGGEPITDDSTSLHKFSYKLEYLLQFDQKEKASLL
GSKKDYWDYFCACLAKVKGANDGIRFVRSISELRTSLGKGRAFIRYSLVHQRLADTLQQCFMNT
KVTSDWYYARSPFLKPKLSSDIVGQLYELTEVQFDLASRGYDLDAAWPTFARRTLATSSSYMWK
PPSRSSSMSSLVSNYLQTQEMASSLDLNSSLNNEALESFDEMRLELDQLEVREKQLQEHVQQLN
RENQALRMTISKQGGQLQVEKETGYLAVEDSIDLVSLVAELQKQGEVTQATVKKLQTCLQALEL
AVDQKETSHSVLQLENVAQALDAVRDSLGRKNQLLASLSECLTRAEKREHPSLDTKLHQEPVPT
DLALKFQELKGKLQTLEGENTKAQELNRQQSLKLEQLAKELQLKEEARASLEHLVKDAVPLQEE
LSGKKQESAQLRRQLQESLAHLSSVEEELAEARQQEKQHREEKQLLEQEAKSLTWQLQLLETQL
GQVSQLVSDLEEQKKQLMQDKDHLSQKVGTLEQLAEAHGASKSKEAVPPQAGEMPEKGQHCLQE
EQVNNATVRGADQDELQKVNQELQKELQNMAVRNQLLEGKLQALQTDYKALQQREAAIQGSLAS
LEAEQASIRQLGNQMEASLLAVRKAKETMKAQVAEKEAALQSKEGECRQLQEEAEQCRLRTEAQ
AQELRALENQCQQQIQLIEVLSAEKGQQGLSLPQVNTAQLALSQAQLEIHQGEAQRLQNEVVDL
QAKLQVALGDRDKLQSQLGVAEAVLGEHKTLVQQLKEQNEALNRAHIQELLQCSEREGILQEES
IYKAQKQEQELRALQAELSQVRCSSEGAHLEHAELQDQLHRANTDTAELGIQVCALTAEKDRME
GALASLAQELQDSKEAALQERKGLELQVMQLQQEKESLQEKLKATEEAASSFSVLQAQLAQAEQ
LAQSLQEAAHQEQDALKFQLSAEIMDHQNRLKTANEECGSLRAQLEEQGQELQMTKEAVQELKI
TKATMEEKLNCTGSHLAECQATLLRKDEESAMLRINLERTQKELEKATSKFQEYYNKLCQEVTN
RERNDQKMLADLDDLNRTKKYLEERLIELLRDKDALWQKSDALEFQQKLSAEEKCLGDMEANHC
HDCKREFSWIVRRHHCRLCGRIFCYYCCNNYVVTKPSGKKERCCRACFQKFGESSGSPDSSGSG
TSQGEPSPMVSPAEAAPQSIGSQGINPVCRPPDDAVFDIITDEELCQIQESGSSLPETPTETDS
MDPNMAEQDTTSNSLTPEDTEDMPLGQDAEICLLKSGELMIKLPLTVEEIASFGEGNRELFVRS
STYSLIPITVAEPGLTISWVFSSDPKSISFSVVFQETEDTPLDQCKVLIPTTRCNSHKESIRGQ
LKVRTPGIYLLIFDNTFSRFISKKVFYHLTVDRPVIYDGSDFP

hide sequence

RefSeq Acc Id:	XP_017451091 ⟸ XM_017595602
- Peptide Label:	isoform X1
- UniProtKB:	D3Z9D2 (UniProtKB/TrEMBL), A6I4C6 (UniProtKB/TrEMBL), A0A0G2K6G5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASSSTETQLQRIIRDLQDAVTELSNEFKEGGEPITDDSTSLHKFSYKLEYLLQFDQKEKASLL GSKKDYWDYFCACLAKVKGANDGIRFVRSISELRTSLGKGRAFIRYSLVHQRLADTLQQCFMNT KVTSDWYYARSPFLKPKLSSDIVGQLYELTEVQFDLASRGYDLDAAWPTFARRTLATSSSYMWK PPSRSSSMSSLVSNYLQTQEMASSLDLNSSLNNEALESFDEMRLELDQLEVREKQLQEHVQQLN RENQALRMTISKQGGQLQVEKETGYLAVEDSIDLVSLVAELQKQGEVTQATVKKLQTCLQALEL AVDQKETSHSVLQLENVAQALDAVRDSLGRKNQLLASLSECLTRAEKREHPSLDTKLHQEPVPT DLALKFQELKGKLQTLEGENTKAQELNRQQSLKLEQLAKELQLKEEARASLEHLVKDAVPLQEE LSGKKQESAQLRRQLQESLAHLSSVEEELAEARQQEKQHREEKQLLEQEAKSLTWQLQLLETQL GQVSQLVSDLEEQKKQLMQDKDHLSQKVGTLEQLAEAHGASKSKEAVPPQAGEMPEKGQHCLQE EQVNNATVRGADQDELQKVNQELQKELQNMAVRNQLLEGKLQALQTDYKALQQREAAIQGSLAS LEAEQASIRQLGNQMEASLLAVRKAKETMKAQVAEKEAALQSKEGECRQLQEEAEQCRLRTEAQ AQELRALENQCQQQIQLIEVLSAEKGQQGLSLPQVNTAQLALSQAQLEIHQGEAQRLQNEVVDL QAKLQVALGDRDKLQSQLGVAEAVLGEHKTLVQQLKEQNEALNRAHIQELLQCSEREGILQEES IYKAQKQEQELRALQAELSQVRCSSEGAHLEHAELQDQLHRANTDTAELGIQVCALTAEKDRME GALASLAQELQDSKEAALQERKGLELQVMQLQQEKESLQEKLKATEEAASSFSVLQAQLAQAEQ LAQSLQEAAHQEQDALKFQLSAEIMDHQNRLKTANEECGSLRAQLEEQGQELQMTKEAVQELKI TKATMEEKLNCTGSHLAECQATLLRKDEESAMLRINLERTQKELEKATSKFQEYYNKLCQEVTN RERNDQKMLADLDDLNRTKKYLEERLIELLRDKDALWQKSDALEFQQKLSAEEKCLGDMEANHC HDCKREFSWIVRRHHCRLCGRIFCYYCCNNYVVTKPSGKKERCCRACFQKFGESSGSPDSSGSG TSQGEPSPMVSPAEAAPQSIGSQGINPVCRPPDDAVFDIITDEELCQIQESGSSLPETPTETDS MDPNMAEQDTTSNSLTPEDTEDMPLGQDAEICLLKSGELMIKLPLTVEEIASFGEGNRELFVRS STYSLIPITVAEPGLTISWVFSSDPKSISFSVVFQETEDTPLDQCKVLIPTTRCNSHKESIRGQ LKVRTPGIYLLIFDNTFSRFISKKVFYHLTVDRPVIYDGSDFP hide sequence

Ensembl Acc Id:

ENSRNOP00000008630 ⟸ ENSRNOT00000008630

Ensembl Acc Id:

ENSRNOP00000073803 ⟸ ENSRNOT00000087799

RefSeq Acc Id:	XP_038937246 ⟸ XM_039081318
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000104750 ⟸ ENSRNOT00000123167

Protein Domains

FYVE-type GOLD RUN

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3Z9D2-F1-model_v2	AlphaFold	D3Z9D2	1-1451	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696420

Promoter ID:

EPDNEW_R6938

Type:

multiple initiation site

Name:

Fyco1_1

Description:

FYVE and coiled-coil domain containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	132,911,147 - 132,911,207	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309069	AgrOrtholog
BioCyc Gene	G2FUF-28606	BioCyc
Ensembl Genes	ENSRNOG00000006336	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000008630	ENTREZGENE
	ENSRNOT00000008630.8	UniProtKB/TrEMBL
	ENSRNOT00000087799	ENTREZGENE
	ENSRNOT00000087799.3	UniProtKB/TrEMBL
	ENSRNOT00000123167.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.58.900	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
	GOLD domain	UniProtKB/TrEMBL
InterPro	FYVE_FYCO1	UniProtKB/TrEMBL
	GOLD	UniProtKB/TrEMBL
	GOLD_dom_sf	UniProtKB/TrEMBL
	Run	UniProtKB/TrEMBL
	Run_dom_sf	UniProtKB/TrEMBL
	RUN_FYCO1	UniProtKB/TrEMBL
	Znf_FYVE	UniProtKB/TrEMBL
	Znf_FYVE-rel	UniProtKB/TrEMBL
	Znf_FYVE_PHD	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
KEGG Report	rno:301085	UniProtKB/TrEMBL
NCBI Gene	301085	ENTREZGENE
PANTHER	FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
Pfam	FYVE	UniProtKB/TrEMBL
	RUN	UniProtKB/TrEMBL
PhenoGen	Fyco1	PhenoGen
PROSITE	GOLD	UniProtKB/TrEMBL
	RUN	UniProtKB/TrEMBL
	ZF_FYVE	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000006336	RatGTEx
SMART	FYVE	UniProtKB/TrEMBL
Superfamily-SCOP	FYVE_PHD_ZnF	UniProtKB/TrEMBL
	GOLD	UniProtKB/TrEMBL
	SSF140741	UniProtKB/TrEMBL
UniProt	A0A0G2K6G5	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LIQ5_RAT	UniProtKB/TrEMBL
	A6I4C6	ENTREZGENE, UniProtKB/TrEMBL
	D3Z9D2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-10-04	Fyco1	FYVE and coiled-coil domain autophagy adaptor 1	Fyco1	FYVE and coiled-coil domain containing 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Fyco1	FYVE and coiled-coil domain containing 1	Fyco1_predicted	FYVE and coiled-coil domain containing 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Fyco1_predicted	FYVE and coiled-coil domain containing 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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