Fyco1 (FYVE and coiled-coil domain containing 1) - Rat Genome Database

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Gene: Fyco1 (FYVE and coiled-coil domain containing 1) Mus musculus
Analyze
Symbol: Fyco1
Name: FYVE and coiled-coil domain containing 1
RGD ID: 1319204
MGI Page MGI
Description: Predicted to enable metal ion binding activity. Predicted to be involved in plus-end-directed vesicle transport along microtubule and positive regulation of autophagosome maturation. Predicted to be located in Golgi apparatus. Predicted to be active in autophagosome; late endosome; and lysosome. Is expressed in central nervous system; early conceptus; and retina. Human ortholog(s) of this gene implicated in cataract 18. Orthologous to human FYCO1 (FYVE and coiled-coil domain autophagy adaptor 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810409M01Rik; FYVE and coiled-coil domain-containing protein 1; maternal embryonic message 2; Mem2; RUFY3; ZFYVE; ZFYVE7
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399123,618,565 - 123,681,110 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9123,618,565 - 123,680,964 (-)EnsemblGRCm39 Ensembl
GRCm389123,789,500 - 123,851,899 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9123,789,500 - 123,851,899 (-)EnsemblGRCm38mm10GRCm38
MGSCv379123,698,628 - 123,761,020 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369123,638,208 - 123,700,267 (-)NCBIMGSCv36mm8
Celera9124,237,925 - 124,300,275 (-)NCBICelera
Cytogenetic Map9F4NCBI
cM Map974.52NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. New member of the Snf1/AMPK kinase family, Melk, is expressed in the mouse egg and preimplantation embryo. Heyer BS, etal., Mol Reprod Dev 1997 Jun;47(2):148-56.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9716663   PMID:10349636   PMID:10444332   PMID:10473127   PMID:11042159   PMID:11076861   PMID:12461651   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073  
PMID:16602821   PMID:18799693   PMID:21267068   PMID:21873635   PMID:24442442   PMID:27929729   PMID:28291748   PMID:28671696   PMID:32037591   PMID:32325033   PMID:33230847   PMID:34215815  
PMID:35343376   PMID:38355793  


Genomics

Comparative Map Data
Fyco1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399123,618,565 - 123,681,110 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9123,618,565 - 123,680,964 (-)EnsemblGRCm39 Ensembl
GRCm389123,789,500 - 123,851,899 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9123,789,500 - 123,851,899 (-)EnsemblGRCm38mm10GRCm38
MGSCv379123,698,628 - 123,761,020 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369123,638,208 - 123,700,267 (-)NCBIMGSCv36mm8
Celera9124,237,925 - 124,300,275 (-)NCBICelera
Cytogenetic Map9F4NCBI
cM Map974.52NCBI
FYCO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38345,917,903 - 45,995,824 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl345,917,903 - 45,995,824 (-)EnsemblGRCh38hg38GRCh38
GRCh37345,959,395 - 46,037,316 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36345,934,399 - 46,012,311 (-)NCBINCBI36Build 36hg18NCBI36
Build 34345,934,399 - 46,012,304NCBI
Celera345,897,023 - 45,974,921 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef346,003,424 - 46,081,373 (-)NCBIHuRef
CHM1_1345,909,364 - 45,987,237 (-)NCBICHM1_1
T2T-CHM13v2.0345,933,786 - 46,011,702 (-)NCBIT2T-CHM13v2.0
Fyco1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88132,289,538 - 132,356,810 (-)NCBIGRCr8
mRatBN7.28123,412,105 - 123,479,315 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8123,412,112 - 123,479,021 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8129,003,808 - 129,071,231 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08127,202,785 - 127,270,208 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08125,032,024 - 125,099,409 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08132,844,042 - 132,910,905 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8132,844,043 - 132,911,193 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08131,995,143 - 132,061,908 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48128,543,895 - 128,612,184 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18128,566,529 - 128,632,267 (-)NCBI
Celera8122,520,323 - 122,587,206 (-)NCBICelera
Cytogenetic Map8q32NCBI
Fyco1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542026,019,514 - 26,074,492 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542026,019,621 - 26,076,846 (+)NCBIChiLan1.0ChiLan1.0
FYCO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2245,882,811 - 45,960,720 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1345,887,576 - 45,965,488 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0345,825,670 - 45,903,595 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1346,932,148 - 47,009,676 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl346,932,148 - 47,009,676 (-)Ensemblpanpan1.1panPan2
FYCO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12042,520,241 - 42,593,886 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2042,525,435 - 42,590,243 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2042,436,100 - 42,509,739 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02043,002,992 - 43,076,845 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2043,003,044 - 43,074,828 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12042,244,102 - 42,317,757 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02042,651,320 - 42,724,955 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02042,926,619 - 43,000,264 (+)NCBIUU_Cfam_GSD_1.0
Fyco1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118200,454,799 - 200,532,091 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365963,720 - 81,257 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365963,938 - 81,226 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FYCO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1329,066,986 - 29,146,755 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11329,068,107 - 29,146,792 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21332,200,269 - 32,239,205 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FYCO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1227,388,796 - 7,466,463 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl227,388,704 - 7,466,430 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041159,699,253 - 159,777,243 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fyco1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473074,923,027 - 74,982,990 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473074,923,072 - 74,982,882 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fyco1
1956 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2740
Count of miRNA genes:744
Interacting mature miRNAs:1035
Transcripts:ENSMUST00000084715, ENSMUST00000167595, ENSMUST00000183700, ENSMUST00000184082
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302001Bdln5_mbody length 5 (mouse)Not determined993591658124359700Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991518283124359700Mouse
1301484Bwq6_mbody weight (mouse)Not determined993591658124359700Mouse
14746992Manh67_mmandible shape 67 (mouse)993865836124359700Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9100889929124359700Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9101829255124359700Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991518283124359700Mouse
12910770Splic1_mspleen iron content 1 (mouse)991291078124359700Mouse
12910772Lvic6_mliver iron content 6 (mouse)991291078124359700Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991560372124359700Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103118511124359700Mouse
12910773Splic3_mspleen iron content 3 (mouse)991291078124359700Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991560372124359700Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9101829255124359700Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991518283124359700Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991518283124359700Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991518283124359700Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996746658124359700Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991560372124359700Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991518283124359700Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103118511124359700Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103118511124359700Mouse

Markers in Region
BB217514  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389123,811,387 - 123,811,473UniSTSGRCm38
MGSCv379123,720,505 - 123,720,591UniSTSGRCm37
Celera9124,259,791 - 124,259,877UniSTS
Cytogenetic Map9FUniSTS
cM Map971.3UniSTS
cM Map971.4UniSTS
Whitehead/MRC_RH91212.47UniSTS
UniSTS:236293  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389123,790,738 - 123,790,975UniSTSGRCm38
MGSCv379123,699,856 - 123,700,093UniSTSGRCm37
Celera9124,239,153 - 124,239,390UniSTS
Cytogenetic Map9FUniSTS
cM Map971.3UniSTS
Mem2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389123,789,707 - 123,789,965UniSTSGRCm38
MGSCv379123,698,825 - 123,699,083UniSTSGRCm37
Cytogenetic Map9FUniSTS
cM Map972.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001110253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_148925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC165425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC242669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC242682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ428065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA467222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CAAA01064986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB244718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ127937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X95350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000084715   ⟹   ENSMUSP00000081764
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9123,618,565 - 123,680,726 (-)Ensembl
GRCm38.p6 Ensembl9123,789,500 - 123,851,661 (-)Ensembl
RefSeq Acc Id: ENSMUST00000167595   ⟹   ENSMUSP00000133222
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9123,618,575 - 123,680,964 (-)Ensembl
GRCm38.p6 Ensembl9123,789,510 - 123,851,899 (-)Ensembl
RefSeq Acc Id: ENSMUST00000183700
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9123,667,247 - 123,680,951 (-)Ensembl
GRCm38.p6 Ensembl9123,838,182 - 123,851,886 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184082   ⟹   ENSMUSP00000139343
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9123,657,577 - 123,680,946 (-)Ensembl
GRCm38.p6 Ensembl9123,828,512 - 123,851,881 (-)Ensembl
RefSeq Acc Id: ENSMUST00000216136
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9123,667,710 - 123,673,671 (-)Ensembl
GRCm38.p6 Ensembl9123,838,645 - 123,844,606 (-)Ensembl
RefSeq Acc Id: NM_001110253   ⟹   NP_001103723
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399123,618,565 - 123,680,964 (-)NCBI
GRCm389123,789,500 - 123,851,899 (-)NCBI
MGSCv379123,698,628 - 123,761,020 (-)RGD
Celera9124,237,915 - 124,300,275 (-)NCBI
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_148925   ⟹   NP_683727
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399123,618,565 - 123,680,726 (-)NCBI
GRCm389123,789,500 - 123,851,661 (-)NCBI
MGSCv379123,698,628 - 123,761,020 (-)RGD
Celera9124,237,915 - 124,300,275 (-)NCBI
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017313159   ⟹   XP_017168648
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399123,618,574 - 123,674,547 (-)NCBI
GRCm389123,789,503 - 123,845,516 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244077   ⟹   XP_030099937
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399123,618,568 - 123,673,732 (-)NCBI
GRCm389123,789,503 - 123,844,968 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154635   ⟹   XP_036010528
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399123,618,568 - 123,681,110 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_683727   ⟸   NM_148925
- UniProtKB: Q7TMT0 (UniProtKB/Swiss-Prot),   Q3V385 (UniProtKB/Swiss-Prot),   Q8BJN2 (UniProtKB/Swiss-Prot),   Q8VDC1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001103723   ⟸   NM_001110253
- UniProtKB: Q7TMT0 (UniProtKB/Swiss-Prot),   Q3V385 (UniProtKB/Swiss-Prot),   Q8BJN2 (UniProtKB/Swiss-Prot),   Q8VDC1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017168648   ⟸   XM_017313159
- Peptide Label: isoform X1
- UniProtKB: Q7TMT0 (UniProtKB/Swiss-Prot),   Q3V385 (UniProtKB/Swiss-Prot),   Q8BJN2 (UniProtKB/Swiss-Prot),   Q8VDC1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030099937   ⟸   XM_030244077
- Peptide Label: isoform X1
- UniProtKB: Q8VDC1 (UniProtKB/Swiss-Prot),   Q7TMT0 (UniProtKB/Swiss-Prot),   Q3V385 (UniProtKB/Swiss-Prot),   Q8BJN2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000139343   ⟸   ENSMUST00000184082
RefSeq Acc Id: ENSMUSP00000081764   ⟸   ENSMUST00000084715
RefSeq Acc Id: ENSMUSP00000133222   ⟸   ENSMUST00000167595
RefSeq Acc Id: XP_036010528   ⟸   XM_036154635
- Peptide Label: isoform X1
- UniProtKB: Q8VDC1 (UniProtKB/Swiss-Prot),   Q7TMT0 (UniProtKB/Swiss-Prot),   Q3V385 (UniProtKB/Swiss-Prot),   Q8BJN2 (UniProtKB/Swiss-Prot)
Protein Domains
GOLD   RUN

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VDC1-F1-model_v2 AlphaFold Q8VDC1 1-1437 view protein structure

Promoters
RGD ID:6844544
Promoter ID:MM_KWN:59283
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:NM_001110253,   NM_148925,   UC009SGR.1,   UC009SGU.1,   UC009SGV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369123,760,521 - 123,761,647 (-)MPROMDB
RGD ID:8671354
Promoter ID:EPDNEW_M13708
Type:multiple initiation site
Name:Fyco1_2
Description:Mus musculus FYVE and coiled-coil domain containing 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13709  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389123,844,606 - 123,844,666EPDNEW
RGD ID:8671356
Promoter ID:EPDNEW_M13709
Type:multiple initiation site
Name:Fyco1_1
Description:Mus musculus FYVE and coiled-coil domain containing 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13708  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389123,851,875 - 123,851,935EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107277 AgrOrtholog
Ensembl Genes ENSMUSG00000025241 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000084715 ENTREZGENE
  ENSMUST00000084715.14 UniProtKB/Swiss-Prot
  ENSMUST00000167595 ENTREZGENE
  ENSMUST00000167595.9 UniProtKB/Swiss-Prot
  ENSMUST00000184082.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.900 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot
  GOLD domain UniProtKB/Swiss-Prot
InterPro FYVE_FYCO1 UniProtKB/Swiss-Prot
  GOLD_dom UniProtKB/Swiss-Prot
  GOLD_dom_sf UniProtKB/Swiss-Prot
  Run_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Run_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RUN_FYCO1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE UniProtKB/Swiss-Prot
  Znf_FYVE-rel UniProtKB/Swiss-Prot
  Znf_FYVE_PHD UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot
KEGG Report mmu:17281 UniProtKB/Swiss-Prot
MGD MGI:107277 ENTREZGENE
NCBI Gene 17281 ENTREZGENE
PANTHER FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot
  FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam FYVE UniProtKB/Swiss-Prot
  RUN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fyco1 PhenoGen
PROSITE GOLD UniProtKB/Swiss-Prot
  RUN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_FYVE UniProtKB/Swiss-Prot
SMART FYVE UniProtKB/Swiss-Prot
Superfamily-SCOP SSF101576 UniProtKB/Swiss-Prot
  SSF140741 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57903 UniProtKB/Swiss-Prot
UniProt A0A140T8V9_MOUSE UniProtKB/TrEMBL
  FYCO1_MOUSE UniProtKB/Swiss-Prot
  Q3V385 ENTREZGENE
  Q7TMT0 ENTREZGENE
  Q8BJN2 ENTREZGENE
  Q8VDC1 ENTREZGENE
UniProt Secondary Q3V385 UniProtKB/Swiss-Prot
  Q7TMT0 UniProtKB/Swiss-Prot
  Q8BJN2 UniProtKB/Swiss-Prot