Cpne4 (copine 4) - Rat Genome Database

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Gene: Cpne4 (copine 4) Rattus norvegicus
Analyze
Symbol: Cpne4
Name: copine 4
RGD ID: 1308844
Description: Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in glutamatergic synapse and plasma membrane. Orthologous to human CPNE4 (copine 4); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: copine IV; copine-4; LOC367160
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88114,056,152 - 114,531,855 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8113,993,703 - 114,531,855 (+)EnsemblGRCr8
mRatBN7.28105,177,376 - 105,653,075 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8105,177,376 - 105,653,068 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8110,825,452 - 111,296,952 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08109,024,637 - 109,496,208 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08106,867,355 - 107,338,883 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08113,105,814 - 113,586,429 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8113,105,814 - 113,586,418 (+)Ensemblrn6Rnor6.0
Rnor_5.08112,491,426 - 112,972,602 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48109,627,862 - 110,112,935 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8104,538,791 - 105,009,664 (+)NCBICelera
RGSC_v3.18109,783,095 - 110,130,738 (+)NCBI
Cytogenetic Map8q32NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23533145   PMID:36307995  


Genomics

Comparative Map Data
Cpne4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88114,056,152 - 114,531,855 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8113,993,703 - 114,531,855 (+)EnsemblGRCr8
mRatBN7.28105,177,376 - 105,653,075 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8105,177,376 - 105,653,068 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8110,825,452 - 111,296,952 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08109,024,637 - 109,496,208 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08106,867,355 - 107,338,883 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08113,105,814 - 113,586,429 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8113,105,814 - 113,586,418 (+)Ensemblrn6Rnor6.0
Rnor_5.08112,491,426 - 112,972,602 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48109,627,862 - 110,112,935 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8104,538,791 - 105,009,664 (+)NCBICelera
RGSC_v3.18109,783,095 - 110,130,738 (+)NCBI
Cytogenetic Map8q32NCBI
CPNE4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383131,533,569 - 132,039,606 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3131,533,555 - 132,285,410 (-)Ensemblhg38GRCh38
GRCh373131,252,413 - 131,758,450 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363132,736,262 - 133,236,534 (-)NCBIBuild 36Build 36hg18NCBI36
Build 343132,736,276 - 133,236,542NCBI
Celera3129,679,587 - 130,180,523 (-)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3128,638,347 - 129,138,815 (-)NCBIHuRef
CHM1_13131,216,983 - 131,716,871 (-)NCBICHM1_1
T2T-CHM13v2.03134,277,285 - 134,784,042 (-)NCBIT2T-CHM13v2.0
Cpne4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399104,443,900 - 104,911,747 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9104,424,485 - 104,911,743 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm389104,566,701 - 105,034,544 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9104,547,286 - 105,034,544 (+)Ensemblmm10GRCm38
MGSCv379104,472,118 - 104,936,874 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369104,427,888 - 104,892,644 (+)NCBIMGSCv36mm8
Celera9104,134,331 - 104,618,066 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map956.61NCBI
Cpne4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555016,493,225 - 6,941,914 (+)Ensembl
ChiLan1.0NW_0049555016,473,669 - 6,941,617 (+)NCBIChiLan1.0ChiLan1.0
CPNE4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22129,492,400 - 130,238,703 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13129,497,127 - 130,243,431 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03128,615,410 - 129,096,612 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13135,937,563 - 136,438,885 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3135,936,137 - 136,436,888 (-)EnsemblpanPan2panpan1.1
CPNE4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12328,621,511 - 29,077,743 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2328,622,845 - 29,077,642 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2328,596,461 - 29,052,657 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02329,129,540 - 29,591,022 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2329,129,545 - 29,591,882 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12328,828,685 - 29,157,354 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02328,886,402 - 29,341,755 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02329,135,984 - 29,465,001 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cpne4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560268,183,810 - 68,644,919 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365294,944,915 - 5,386,249 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPNE4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13367,651 - 963,773 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113367,801 - 963,775 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213566,282 - 742,613 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CPNE4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11558,199,223 - 58,703,663 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604131,199,582 - 31,710,978 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpne4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247307,548,099 - 7,944,326 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247307,546,501 - 8,079,183 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cpne4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1895,883,314 - 96,335,846 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cpne4
3701 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:399
Count of miRNA genes:218
Interacting mature miRNAs:253
Transcripts:ENSRNOT00000016749
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)897492344116428905Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8111249511117802327Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
D8Mgh2  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr88114,525,825 - 114,526,085 (+)Marker Load Pipeline
mRatBN7.28105,647,037 - 105,647,297 (+)MAPPERmRatBN7.2
Rnor_6.08113,580,387 - 113,580,646NCBIRnor6.0
Rnor_5.08112,967,014 - 112,967,273UniSTSRnor5.0
RGSC_v3.48110,106,272 - 110,106,532RGDRGSC3.4
RGSC_v3.48110,106,273 - 110,106,532UniSTSRGSC3.4
Celera8105,003,685 - 105,003,944UniSTS
RGSC_v3.18110,125,728 - 110,125,987RGD
RH 3.4 Map81152.4UniSTS
RH 3.4 Map81152.4RGD
RH 2.0 Map8875.2RGD
Cytogenetic Map8q32UniSTS
D8Mgh11  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr88114,525,837 - 114,526,001 (+)Marker Load Pipeline
mRatBN7.28105,647,049 - 105,647,213 (+)MAPPERmRatBN7.2
Rnor_6.08113,580,399 - 113,580,562NCBIRnor6.0
Rnor_5.08112,967,026 - 112,967,189UniSTSRnor5.0
RGSC_v3.48110,106,284 - 110,106,448RGDRGSC3.4
RGSC_v3.48110,106,285 - 110,106,448UniSTSRGSC3.4
Celera8105,003,697 - 105,003,860UniSTS
RGSC_v3.18110,125,739 - 110,125,903RGD
RH 3.4 Map81145.3UniSTS
RH 3.4 Map81145.3RGD
RH 2.0 Map8871.2RGD
Cytogenetic Map8q32UniSTS
D8Rat65  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr88114,285,438 - 114,285,665 (+)Marker Load Pipeline
mRatBN7.28105,406,630 - 105,406,857 (+)MAPPERmRatBN7.2
Rnor_6.08113,334,360 - 113,334,638NCBIRnor6.0
Rnor_5.08112,719,810 - 112,720,088UniSTSRnor5.0
RGSC_v3.48109,862,358 - 109,862,585RGDRGSC3.4
RGSC_v3.48109,862,359 - 109,862,585UniSTSRGSC3.4
Celera8104,766,660 - 104,766,889UniSTS
RGSC_v3.18109,881,814 - 109,882,040RGD
RH 3.4 Map81148.7UniSTS
RH 3.4 Map81148.7RGD
RH 2.0 Map8870.0RGD
SHRSP x BN Map866.31RGD
Cytogenetic Map8q32UniSTS
D8Arb28  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28105,495,002 - 105,495,062 (+)MAPPERmRatBN7.2
Rnor_6.08113,418,665 - 113,418,724NCBIRnor6.0
Rnor_5.08112,806,121 - 112,806,180UniSTSRnor5.0
RGSC_v3.48109,954,771 - 109,954,831RGDRGSC3.4
RGSC_v3.48109,954,772 - 109,954,831UniSTSRGSC3.4
Celera8104,853,382 - 104,853,441UniSTS
RGSC_v3.18109,974,226 - 109,974,286RGD
RH 3.4 Map81152.3RGD
RH 3.4 Map81152.3UniSTS
RH 2.0 Map8877.0RGD
FHH x ACI Map876.84RGD
Cytogenetic Map8q32UniSTS
D8Got166  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28105,366,332 - 105,366,513 (+)MAPPERmRatBN7.2
Rnor_6.08113,293,546 - 113,293,724NCBIRnor6.0
Rnor_5.08112,678,828 - 112,679,006UniSTSRnor5.0
RGSC_v3.48109,818,023 - 109,818,202RGDRGSC3.4
RGSC_v3.48109,818,024 - 109,818,202UniSTSRGSC3.4
Celera8104,726,664 - 104,726,836UniSTS
RGSC_v3.18109,837,479 - 109,837,657RGD
RH 3.4 Map81153.4UniSTS
RH 3.4 Map81153.4RGD
RH 2.0 Map8871.8RGD
Cytogenetic Map8q32UniSTS
BF402747  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28105,652,539 - 105,652,730 (+)MAPPERmRatBN7.2
Rnor_6.08113,585,890 - 113,586,080NCBIRnor6.0
Rnor_5.08112,972,063 - 112,972,253UniSTSRnor5.0
RGSC_v3.48110,112,407 - 110,112,597UniSTSRGSC3.4
Celera8105,009,136 - 105,009,326UniSTS
RH 3.4 Map81151.8UniSTS
Cytogenetic Map8q32UniSTS
AU048287  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28105,563,021 - 105,563,173 (+)MAPPERmRatBN7.2
Rnor_6.08113,496,186 - 113,496,337NCBIRnor6.0
Rnor_5.08112,882,828 - 112,882,979UniSTSRnor5.0
RGSC_v3.48110,022,228 - 110,022,379UniSTSRGSC3.4
Celera8104,919,724 - 104,919,869UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
11 7 34 160 63 62 31 87 31 5 267 150 10 134 69 73 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000016749   ⟹   ENSRNOP00000016749
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8114,056,152 - 114,531,855 (+)Ensembl
mRatBN7.2 Ensembl8105,177,376 - 105,653,068 (+)Ensembl
Rnor_6.0 Ensembl8113,105,814 - 113,586,418 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099083   ⟹   ENSRNOP00000094413
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8113,993,703 - 114,531,855 (+)Ensembl
mRatBN7.2 Ensembl8105,194,444 - 105,653,068 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102050   ⟹   ENSRNOP00000080435
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8114,094,846 - 114,531,855 (+)Ensembl
mRatBN7.2 Ensembl8105,216,078 - 105,653,068 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113078   ⟹   ENSRNOP00000092538
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8114,056,152 - 114,531,855 (+)Ensembl
mRatBN7.2 Ensembl8105,177,376 - 105,653,068 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000171645   ⟹   ENSRNOP00000109404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8114,073,176 - 114,530,256 (+)Ensembl
RefSeq Acc Id: NM_001109003   ⟹   NP_001102473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,056,152 - 114,531,855 (+)NCBI
mRatBN7.28105,177,376 - 105,653,068 (+)NCBI
Rnor_6.08113,105,814 - 113,586,418 (+)NCBI
Rnor_5.08112,491,426 - 112,972,602 (+)NCBI
RGSC_v3.48109,627,862 - 110,112,935 (+)RGD
Celera8104,538,791 - 105,009,664 (+)RGD
Sequence:
RefSeq Acc Id: XM_017595789   ⟹   XP_017451278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,072,997 - 114,531,853 (+)NCBI
mRatBN7.28105,194,187 - 105,653,075 (+)NCBI
Rnor_6.08113,122,931 - 113,586,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017595791   ⟹   XP_017451280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,075,959 - 114,531,853 (+)NCBI
mRatBN7.28105,197,185 - 105,652,807 (+)NCBI
Rnor_6.08113,125,765 - 113,586,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039081885   ⟹   XP_038937813
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,061,492 - 114,531,853 (+)NCBI
mRatBN7.28105,182,705 - 105,652,807 (+)NCBI
RefSeq Acc Id: XM_039081886   ⟹   XP_038937814
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,063,260 - 114,531,853 (+)NCBI
mRatBN7.28105,184,413 - 105,652,807 (+)NCBI
RefSeq Acc Id: NP_001102473   ⟸   NM_001109003
- Sequence:
RefSeq Acc Id: XP_017451278   ⟸   XM_017595789
- Peptide Label: isoform X1
- UniProtKB: A6I2M2 (UniProtKB/TrEMBL),   F1M0Z3 (UniProtKB/TrEMBL),   A0A8I6GKR1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451280   ⟸   XM_017595791
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000016749   ⟸   ENSRNOT00000016749
RefSeq Acc Id: XP_038937813   ⟸   XM_039081885
- Peptide Label: isoform X2
- UniProtKB: A6I2M2 (UniProtKB/TrEMBL),   F1M0Z3 (UniProtKB/TrEMBL),   H1UBM8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937814   ⟸   XM_039081886
- Peptide Label: isoform X2
- UniProtKB: A6I2M2 (UniProtKB/TrEMBL),   F1M0Z3 (UniProtKB/TrEMBL),   H1UBM8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000092538   ⟸   ENSRNOT00000113078
Ensembl Acc Id: ENSRNOP00000080435   ⟸   ENSRNOT00000102050
Ensembl Acc Id: ENSRNOP00000094413   ⟸   ENSRNOT00000099083
Ensembl Acc Id: ENSRNOP00000109404   ⟸   ENSRNOT00000171645
Protein Domains
C2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M0Z3-F1-model_v2 AlphaFold F1M0Z3 1-567 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308844 AgrOrtholog
BioCyc Gene G2FUF-29281 BioCyc
Ensembl Genes ENSRNOG00000026577 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016749.8 UniProtKB/TrEMBL
  ENSRNOT00000099083.2 UniProtKB/TrEMBL
  ENSRNOT00000102050 ENTREZGENE
  ENSRNOT00000102050.2 UniProtKB/TrEMBL
  ENSRNOT00000113078.2 UniProtKB/TrEMBL
  ENSRNOT00000171645 ENTREZGENE
  ENSRNOT00000171645.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/TrEMBL
InterPro C2_Ca-dep UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  C2B_Copine UniProtKB/TrEMBL
  Copine UniProtKB/TrEMBL
  Copine UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
KEGG Report rno:367160 UniProtKB/TrEMBL
NCBI Gene 367160 ENTREZGENE
PANTHER COPINE-4 UniProtKB/TrEMBL
  PTHR10857 UniProtKB/TrEMBL
Pfam Copine UniProtKB/TrEMBL
  PF00168 UniProtKB/TrEMBL
PhenoGen Cpne4 PhenoGen
PROSITE PS50004 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026577 RatGTEx
SMART SM00239 UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
  SSF53300 UniProtKB/TrEMBL
UniProt A0A8I5ZPL3_RAT UniProtKB/TrEMBL
  A0A8I6AVT2_RAT UniProtKB/TrEMBL
  A0A8I6GKR1 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LVU1_RAT UniProtKB/TrEMBL
  A6I2M2 ENTREZGENE, UniProtKB/TrEMBL
  F1M0Z3 ENTREZGENE, UniProtKB/TrEMBL
  H1UBM8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-03 Cpne4  copine 4  Cpne4  copine IV  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Cpne4  copine IV   Cpne4_predicted  copine IV (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cpne4_predicted  copine IV (predicted)      Symbol and Name status set to approved 70820 APPROVED