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Gene: Gpc5 (glypican 5) Rattus norvegicus

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Symbol:

Gpc5

Name:

glypican 5

RGD ID:

1308835

Description:

Predicted to be involved in cell migration; positive regulation of canonical Wnt signaling pathway; and regulation of protein localization to membrane. Predicted to be located in plasma membrane and side of membrane. Predicted to be active in cell surface. Orthologous to human GPC5 (glypican 5); PARTICIPATES IN Hedgehog signaling pathway; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

glypican-5; LOC306157

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GPC5 (glypican 5)	HGNC	HomoloGene, NCBI, Panther
Mus musculus (house mouse):	Gpc5 (glypican 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gpc5 (glypican 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GPC5 (glypican 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GPC5 (glypican 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gpc5 (glypican 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GPC5 (glypican 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GPC5 (glypican 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gpc5 (glypican 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Gpc5 (glypican 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	GPC5 (glypican 5)	Alliance	DIOPT (HGNC)
Homo sapiens (human):	GPC5 (glypican 5)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Gpc5 (glypican 5)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gpc5a (glypican 5a)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	gpn-1	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	dally	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	98,614,499 - 100,051,285 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	98,646,340 - 100,051,514 (+)	Ensembl				GRCr8
mRatBN7.2	15	92,207,275 - 93,644,054 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	92,239,176 - 93,643,282 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	96,146,021 - 97,550,277 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	97,278,871 - 98,683,154 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	94,186,346 - 95,610,977 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	100,283,131 - 101,776,838 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	15	103,739,948 - 104,456,749 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	15	105,221,065 - 105,224,752 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	99,917,274 - 101,353,034 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	91,103,971 - 92,504,072 (+)	NCBI		Celera
RGSC_v3.1	15	99,932,834 - 100,716,974 (+)	NCBI
Cytogenetic Map	15	q23-q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Albuminuria (ISO)

nephrotic syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,4,4'-trichlorobiphenyl (ISO)

4,4'-diaminodiphenylmethane (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aldehydo-D-glucose (ISO)

antirheumatic drug (ISO)

atrazine (EXP,ISO)

Azaspiracid (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

CGP 52608 (ISO)

chenodeoxycholic acid (ISO)

cocaine (ISO)

D-glucose (ISO)

daunorubicin (ISO)

deoxycholic acid (ISO)

dinophysistoxin 1 (ISO)

dorsomorphin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

ethylparaben (ISO)

Evodiamine (ISO)

folic acid (ISO)

fructose (ISO)

fulvestrant (ISO)

glucose (ISO)

glycochenodeoxycholic acid (ISO)

glycocholic acid (ISO)

glycodeoxycholic acid (ISO)

glyphosate (EXP)

herbicide (ISO)

indole-3-methanol (EXP)

methapyrilene (ISO)

methoxychlor (EXP)

N-acetyl-L-cysteine (EXP)

N-nitrosodiethylamine (EXP)

O-methyleugenol (ISO)

paracetamol (ISO)

PCB138 (EXP,ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

testosterone (EXP)

tricetin (ISO)

triclosan (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

cell migration (IBA)

positive regulation of canonical Wnt signaling pathway (IBA)

regulation of protein localization to membrane (IBA)

regulation of signal transduction (IEA)

Cellular Component

cell surface (IBA)

extracellular matrix (IEA)

plasma membrane (IEA)

side of membrane (IEA)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Hedgehog signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation
6.	Dally-like core protein and its mammalian homologues mediate stimulatory and inhibitory effects on Hedgehog signal response.	Williams EH, etal., Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):5869-74. Epub 2010 Mar 15.

Additional References at PubMed

PMID:25931508

Genomics

Comparative Map Data

Gpc5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	98,614,499 - 100,051,285 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	98,646,340 - 100,051,514 (+)	Ensembl				GRCr8
mRatBN7.2	15	92,207,275 - 93,644,054 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	92,239,176 - 93,643,282 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	96,146,021 - 97,550,277 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	97,278,871 - 98,683,154 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	94,186,346 - 95,610,977 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	100,283,131 - 101,776,838 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	15	103,739,948 - 104,456,749 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	15	105,221,065 - 105,224,752 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	99,917,274 - 101,353,034 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	91,103,971 - 92,504,072 (+)	NCBI		Celera
RGSC_v3.1	15	99,932,834 - 100,716,974 (+)	NCBI
Cytogenetic Map	15	q23-q24	NCBI

GPC5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	91,398,621 - 92,867,237 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	91,398,621 - 92,873,682 (+)	Ensembl			hg38	GRCh38
GRCh37	13	92,050,875 - 93,519,490 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	90,848,930 - 92,317,491 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	13	90,848,887 - 92,317,486	NCBI
Celera	13	72,897,866 - 74,366,737 (+)	NCBI		Celera
Cytogenetic Map	13	q31.3	NCBI
HuRef	13	72,646,702 - 74,116,008 (+)	NCBI		HuRef
CHM1_1	13	92,019,541 - 93,489,120 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	90,601,154 - 92,070,908 (+)	NCBI		T2T-CHM13v2.0

Gpc5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	115,329,640 - 116,762,604 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	115,329,647 - 116,762,591 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	115,092,201 - 116,525,192 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	115,092,215 - 116,525,179 (+)	Ensembl			mm10	GRCm38
MGSCv37	14	115,491,437 - 116,924,414 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	113,974,089 - 115,406,638 (+)	NCBI		MGSCv36	mm8
Celera	14	113,683,044 - 115,103,380 (+)	NCBI		Celera
Cytogenetic Map	14	E4	NCBI
cM Map	14	59.43	NCBI

Gpc5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955404	16,827,833 - 18,091,256 (-)	Ensembl
ChiLan1.0	NW_004955404	16,824,366 - 18,091,464 (-)	NCBI	ChiLan1.0	ChiLan1.0

GPC5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	92,946,967 - 94,407,470 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	91,613,624 - 92,365,064 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	72,588,968 - 74,051,961 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	91,755,264 - 93,206,407 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	91,755,623 - 93,205,610 (+)	Ensembl			panPan2	panpan1.1

GPC5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	42,526,426 - 43,873,992 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	42,526,054 - 43,870,405 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	42,382,134 - 43,727,661 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	42,927,701 - 44,302,647 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	42,927,696 - 44,299,055 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	42,610,360 - 43,958,749 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	42,664,714 - 43,999,944 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	42,665,638 - 44,009,293 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Gpc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	178,229,811 - 178,459,961 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936472	17,492,183 - 17,708,067 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GPC5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	60,791,363 - 62,147,239 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	11	60,791,000 - 62,149,911 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	66,666,602 - 67,323,189 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GPC5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	70,294,405 - 71,729,729 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666046	26,678,549 - 28,148,799 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gpc5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624779	982,179 - 1,659,418 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624779	982,178 - 1,712,772 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Gpc5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	12	10,263,357 - 10,728,375 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Gpc5
6274 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	101
Count of miRNA genes:	85
Interacting mature miRNAs:	90
Transcripts:	ENSRNOT00000057664
Prediction methods:	Microtar, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1576315	Schws6	Schwannoma susceptibility QTL 6		0.0069	nervous system integrity trait (VT:0010566)	post-insult time of death (CMO:0002005)	15	60213984	105213984	Rat
1300144	Rf23	Renal function QTL 23	3.61		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	15	44806773	104695021	Rat
1549844	Bss7	Bone structure and strength QTL 7	6.4		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	15	82194914	108192169	Rat
2300326	Plaw1	Placental weight QTL 1	15	0.005	placenta mass (VT:0004257)	placenta wet weight (CMO:0002088)	15	74735564	106469153	Rat
1300118	Bp190	Blood pressure QTL 190	2.94		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	15	88677086	104695021	Rat
1358354	Srcrt5	Stress Responsive Cort QTL 5	3.38		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	82503470	108192169	Rat
70182	BpQTLcluster12	Blood pressure QTL cluster 12	3.53		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	15	72716871	101425383	Rat
70155	Gcs1	Gastric cancer susceptibility QTL1	3.8		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	15	82714037	106778197	Rat
1300120	Kidm7	Kidney mass QTL 7	3.55		kidney mass (VT:0002707)	left kidney wet weight to body weight ratio (CMO:0001954)	15	88677086	104695021	Rat
631655	Bp126	Blood pressure QTL 126	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	64571127	108192169	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	25285835	104695021	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	25285835	104695021	Rat
7411646	Foco21	Food consumption QTL 21	23.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	15	84278281	108192169	Rat
631516	Gluco31	Glucose level QTL 31	7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	15	72716871	101425383	Rat
2298549	Neuinf12	Neuroinflammation QTL 12	3.5		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	15	61710951	106710951	Rat
1581519	Cm59	Cardiac mass QTL 59	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	15	95260808	102247606	Rat
1331724	Bp223	Blood pressure QTL 223	3.53715		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	75928947	101425383	Rat
1641889	Colcr6	Colorectal carcinoma resistance QTL 6	2.9	0.0126	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	15	83700787	108192169	Rat
2317050	Aia24	Adjuvant induced arthritis QTL 24	2.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	15	59257087	104257087	Rat
2313080	Bss65	Bone structure and strength QTL 65	3.9	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	15	67399137	108192169	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	25285835	104695021	Rat
2317055	Aia10	Adjuvant induced arthritis QTL 10	3.41		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	15	82194914	108192169	Rat

Markers in Region

D15Rat25

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	93,004,744 - 93,004,898 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	101,059,401 - 101,059,554	NCBI	Rnor6.0
Rnor_5.0	15	104,508,697 - 104,508,850	UniSTS	Rnor5.0
RGSC_v3.4	15	100,708,158 - 100,708,312	RGD	RGSC3.4
RGSC_v3.4	15	100,708,159 - 100,708,312	UniSTS	RGSC3.4
Celera	15	91,866,627 - 91,866,780	UniSTS
RGSC_v3.1	15	100,723,939 - 100,724,092	RGD
RH 3.4 Map	15	632.1	UniSTS
RH 3.4 Map	15	632.1	RGD
RH 2.0 Map	15	519.5	RGD
SHRSP x BN Map	15	58.1398	RGD
FHH x ACI Map	15	70.62	RGD
Cytogenetic Map	15	q24	UniSTS

D15Rat26

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	15	98,754,134 - 98,754,281 (+)	Marker Load Pipeline
mRatBN7.2	15	92,346,926 - 92,347,073 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	100,390,296 - 100,390,442	NCBI	Rnor6.0
Rnor_5.0	15	103,847,523 - 103,847,669	UniSTS	Rnor5.0
RGSC_v3.4	15	100,026,552 - 100,026,699	RGD	RGSC3.4
RGSC_v3.4	15	100,026,553 - 100,026,699	UniSTS	RGSC3.4
Celera	15	91,210,749 - 91,210,895	UniSTS
RGSC_v3.1	15	100,042,332 - 100,042,479	RGD
RH 3.4 Map	15	610.4	UniSTS
RH 3.4 Map	15	610.4	RGD
RH 2.0 Map	15	495.0	RGD
SHRSP x BN Map	15	58.4498	RGD
Cytogenetic Map	15	q24	UniSTS

D15Rat103

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	15	98,885,918 - 98,886,039 (+)	Marker Load Pipeline
RGSC_v3.4	15	100,174,510 - 100,174,630	UniSTS	RGSC3.4
RGSC_v3.4	15	100,174,509 - 100,174,630	RGD	RGSC3.4
Celera	15	91,343,541 - 91,343,661	UniSTS
RGSC_v3.1	15	100,190,289 - 100,190,410	RGD
SHRSP x BN Map	15	58.5898	RGD
SHRSP x BN Map	15	58.5898	UniSTS
Cytogenetic Map	15	q24	UniSTS

D15Rat155

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	15	99,440,779 - 99,441,019 (+)	Marker Load Pipeline
mRatBN7.2	15	93,033,574 - 93,033,814 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	101,088,037 - 101,088,275	NCBI	Rnor6.0
Rnor_5.0	15	104,537,328 - 104,537,566	UniSTS	Rnor5.0
RGSC_v3.4	15	100,736,070 - 100,736,310	RGD	RGSC3.4
RGSC_v3.4	15	100,736,071 - 100,736,310	UniSTS	RGSC3.4
Celera	15	91,895,368 - 91,895,607	UniSTS
RGSC_v3.1	15	100,751,851 - 100,752,090	RGD
RH 3.4 Map	15	629.4	UniSTS
RH 3.4 Map	15	629.4	RGD
RH 2.0 Map	15	513.5	RGD
SHRSP x BN Map	15	58.1398	RGD
Cytogenetic Map	15	q24	UniSTS

D15Rat156

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	93,033,574 - 93,033,803 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	101,088,037 - 101,088,264	NCBI	Rnor6.0
Rnor_5.0	15	104,537,328 - 104,537,555	UniSTS	Rnor5.0
RGSC_v3.4	15	100,736,071 - 100,736,299	UniSTS	RGSC3.4
RGSC_v3.4	15	100,736,070 - 100,736,299	RGD	RGSC3.4
Celera	15	91,895,368 - 91,895,596	UniSTS
RGSC_v3.1	15	100,751,851 - 100,752,079	RGD
RH 3.4 Map	15	629.3	RGD
RH 3.4 Map	15	629.3	UniSTS
RH 2.0 Map	15	513.5	RGD
SHRSP x BN Map	15	58.5898	RGD
Cytogenetic Map	15	q24	UniSTS

D15Got85

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	92,833,535 - 92,833,809 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	100,883,950 - 100,884,223	NCBI	Rnor6.0
Rnor_5.0	15	104,334,735 - 104,335,008	UniSTS	Rnor5.0
RGSC_v3.4	15	100,529,949 - 100,530,222	RGD	RGSC3.4
RGSC_v3.4	15	100,529,949 - 100,530,222	UniSTS	RGSC3.4
Celera	15	91,695,859 - 91,696,114	UniSTS
RGSC_v3.1	15	100,545,729 - 100,546,002	RGD
RH 3.4 Map	15	625.3	RGD
RH 3.4 Map	15	625.3	UniSTS
RH 2.0 Map	15	509.5	RGD
Cytogenetic Map	15	q24	UniSTS

RH131320

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	93,643,644 - 93,643,831 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	101,776,429 - 101,776,615	NCBI	Rnor6.0
Rnor_5.0	15	105,224,343 - 105,224,529	UniSTS	Rnor5.0
RGSC_v3.4	15	101,352,625 - 101,352,811	UniSTS	RGSC3.4
Celera	15	92,503,663 - 92,503,849	UniSTS
RH 3.4 Map	15	634.3	UniSTS
Cytogenetic Map	15	q24	UniSTS

BF388001

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	93,243,982 - 93,244,162 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	101,331,881 - 101,332,060	NCBI	Rnor6.0
Rnor_5.0	15	104,779,095 - 104,779,274	UniSTS	Rnor5.0
RGSC_v3.4	15	100,949,126 - 100,949,305	UniSTS	RGSC3.4
Celera	15	92,105,031 - 92,105,210	UniSTS
RH 3.4 Map	15	618.2	UniSTS
Cytogenetic Map	15	q24	UniSTS

BF402049

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	92,969,048 - 92,969,146 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	101,020,468 - 101,020,564	NCBI	Rnor6.0
Celera	15	91,831,069 - 91,831,166	UniSTS
RH 3.4 Map	15	629.5	UniSTS
Cytogenetic Map	15	q24	UniSTS

AU048228

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	92,790,045 - 92,790,330 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	100,840,300 - 100,840,588	NCBI	Rnor6.0
Rnor_5.0	15	104,291,085 - 104,291,373	UniSTS	Rnor5.0
RGSC_v3.4	15	100,486,451 - 100,486,739	UniSTS	RGSC3.4
Celera	15	91,652,335 - 91,652,621	UniSTS
Cytogenetic Map	15	q24	UniSTS

BF415743

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	92,241,621 - 92,241,736 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	100,285,207 - 100,285,321	NCBI	Rnor6.0
Rnor_5.0	15	103,742,024 - 103,742,138	UniSTS	Rnor5.0
RGSC_v3.4	15	99,919,352 - 99,919,466	UniSTS	RGSC3.4
Celera	15	91,106,051 - 91,106,165	UniSTS
RH 3.4 Map	15	608.4	UniSTS
Cytogenetic Map	15	q24	UniSTS

D5S680

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	93,613,562 - 93,614,912 (+)	MAPPER	mRatBN7.2
mRatBN7.2	15	93,613,925 - 93,614,912 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	101,746,315 - 101,747,700	NCBI	Rnor6.0
Rnor_6.0	15	101,746,716 - 101,747,700	NCBI	Rnor6.0
Rnor_5.0	15	105,194,630 - 105,195,614	UniSTS	Rnor5.0
Rnor_5.0	15	105,194,229 - 105,195,614	UniSTS	Rnor5.0
RGSC_v3.4	15	101,322,911 - 101,323,895	UniSTS	RGSC3.4
Celera	15	92,473,850 - 92,474,931	UniSTS
Cytogenetic Map	15	q24	UniSTS

AFM350VD1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	92,537,764 - 92,538,202 (+)	MAPPER	mRatBN7.2
mRatBN7.2	14	7,701,468 - 7,702,102 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	9,276,013 - 9,276,645	NCBI	Rnor6.0
Rnor_6.0	15	100,586,361 - 100,586,798	NCBI	Rnor6.0
Rnor_5.0	15	104,043,439 - 104,043,876	UniSTS	Rnor5.0
Rnor_5.0	14	9,237,569 - 9,238,201	UniSTS	Rnor5.0
RGSC_v3.4	14	8,954,774 - 8,955,406	UniSTS	RGSC3.4
RGSC_v3.4	15	100,232,059 - 100,232,496	UniSTS	RGSC3.4
Celera	15	91,402,387 - 91,402,824	UniSTS
Celera	14	7,822,897 - 7,823,529	UniSTS
Cytogenetic Map	15	q24	UniSTS
Cytogenetic Map	14	p22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	hemolymphoid system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	sensory system	visual system
2	12	27	24	62	40	5	24	20	10	9	9

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274345	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000098995 ⟹ ENSRNOP00000083633

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	98,646,340 - 100,000,772 (+)	Ensembl
mRatBN7.2 Ensembl	15	92,239,176 - 92,956,023 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112165 ⟹ ENSRNOP00000089971

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	98,646,414 - 99,437,511 (+)	Ensembl
mRatBN7.2 Ensembl	15	92,239,176 - 93,643,282 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116613 ⟹ ENSRNOP00000080406

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	98,646,340 - 98,981,254 (+)	Ensembl
mRatBN7.2 Ensembl	15	92,239,176 - 92,574,052 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000131898 ⟹ ENSRNOP00000108316

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	98,646,340 - 100,051,384 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000147986 ⟹ ENSRNOP00000108934

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	98,646,369 - 100,000,777 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000161833 ⟹ ENSRNOP00000104282

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	98,646,340 - 100,051,514 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000168519 ⟹ ENSRNOP00000107793

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	98,646,344 - 99,395,893 (+)	Ensembl

RefSeq Acc Id:

NM_001107285 ⟹ NP_001100755

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	98,646,758 - 100,051,285 (+)	NCBI
mRatBN7.2	15	92,239,546 - 93,644,054 (+)	NCBI
Rnor_6.0	15	100,283,131 - 101,776,838 (+)	NCBI
Rnor_5.0	15	103,739,948 - 104,456,749 (+)	NCBI
Rnor_5.0	15	105,221,065 - 105,224,752 (+)	NCBI
RGSC_v3.4	15	99,917,274 - 101,353,034 (+)	RGD
Celera	15	91,103,971 - 92,504,072 (+)	RGD

Sequence:

show sequence

ATGGATGCTCGCACCTGGCGTCTGGGATGGCGCTGTCTCCTTCTCCTGGCTCTTCTTGGATCTA
CCCGAAGCGAGGGCGTGGAAAGCTGCGAAGAAGTTCGGAAACTTTTCCAGTGGAGGCTTGGGGG
AGCTGTCAAGGGGCTGCCGGAGGCGCCGCGGGCAGGACCTGATCTTCAGGTGTGCCTATCCAAA
AACCCAACGTGCTGTACCAGGAAGATGGAGGAGCAGTACCAGATTGCCGCTCAGCAGGATTTGC
AGCAGGTGCTACAGACATCCAGCTCAACACTAAAGTTGCTAATATCTCGGAATGCAGCTGCTTT
TCAAGAGACCCTGGAAACCCTCATCCGACAAGCAGAGAATTACACCAGTATCCTTTTCTGCAAC
ACCTACCGGAACATGGCCTTGGAGGCTGCTGCTTCCACTCAGGAGTTTTTCACCGATGTGGGAC
TCTATTTATTTGGTGCGGATGTTAACCCCGAGGAATTTGTAAACAGATTTTTTGACAGTCTTTT
CCCTCTGGTCTATAACCATCTCATAAACCCTGGTGTGACTGACAGTTCTCTGCAATACTCAGAA
TGCATCCGAACGGCCCGCCAGGATGTTAGTCCATTTGGCAACATCCCCAAAAGAGTCATGGGAC
AGATGGGGAGGTCACTGCTGCCCGGTCGCACATTCCTGCAGGCGCTTAATCTGGGCATTGAAGT
CATCAACACCACGGACCATATCCACTTCTCTAAGGAGTGCAGTAGGGCCCTCCTGAAGATGCAG
TACTGTCCTCACTGCCAGAGCCTGACGCTCAGTAAGCCCTGTATGGGGTACTGCCTCAATGTCA
TCAGGGGCTGTCTAGCCCACATGACAGACCTTAATCCACACTGGCATGCTTATATCCGCTCCTT
GGAAGAGCTGTCGGATGCGATGCACGGAACCTACGACGTTGAGCACGTGCTCCTGAACTTCCAC
TTACTTGTTAATGATGCCATGCTGCAGGCTCACCTCAATGCGCAGAAGTTACTGGATCAGGTGA
ATAAGATTTGCGGCCTTCCAGTGAGAACAGCGACGCAGAGCCCCCGCTGTACTTTTGATCCAAG
CAAAGAGAGGCATGGGATGAAGATCTCTCCAAGGAATGGTGAAGAGACACTTGCCAACAGAAGA
AAAGAATTCATCAATAGCCTTAGGCTGCACAGGTCCTTCTATGGTGGCCTGGCTGACCAGCTTT
GTGTTAATGAATGGGCTGCAGCTGAAGGGAGGCCCTGCTGGAATGGGGAGGACATAGTGAAAAG
CTATGCTCAGCGTGTGGTTGGAAATGGCGTCAAAGCCCAGTCTGCAAATCCTGAAGTCAGAGTC
AGAGGAACTGATCCTGTGGTAAATCAGATAATTGACAAACTGAAGCATGTGATCCAGCTGTTAC
AGGGCAGATCACCCAAACCCAACAAGTGGGAGCTTCTTCATCCGGGCAGTGGTGGCGGCATGCT
TGAGCAATCTAGTGGAGATTGTGATGACGAAGACGGTTGTGGGGGATCAGGAAGCGGAGAAGTC
AAGAGGACCCTAAAGATCACAAACTGGATGCCAGACAGCATGAACTTCAGTGACGTCAAACAAG
TTCATGGAGCAGACCGTGGAAGTACTCTGGATACAACTGGTGCGGGATGCGGGTCAGGAACTGA
GTCTATGACGCTCCTGCTGATGGGGACGCTGATGTTTCTTCCCTGGCTTTGGTAATGGAGCTCT
TCTTCAAGACATACCCTACTGCAGACTTGACTTATCCCCTATCTCTTTATGCCTGGAAAAGAAG
AACTCTTAAAATACCGATGGAAATTACAGGAAAGTATGCGATAGTAACTTCTTAGAAGCCAATG
GAATGTCCACAGCATTCCTATCAATCAAGACTCTGATAGTCTGTTTCAAACTCTGTCTTCTTGG
CATCTAACTTAAAACTTCTTAAATTCTAACACTCAATCTAAACTGTGAAAACTCAGAAGTGACT
TTTAATAAGAAGGCTTCGGTGTATCTGTAATTCTGCTCTGCTCAATCAAACCCTTTCCTTTCAG
TGTTGTGAATGCTGGCATTTGAGGGTGTGTTTGCCAAGCACGGGATACGATAAGTAGTATTTCT
TAAAGTACTGGGAATAAAAATAACATTAAGTCAAAGCACACAAAGGCAAGTATTATGCATGCAT
TCTGGGAGATTCTTTCATTTTTGCGAGTTAAATCAAGAAGTTGCTACAAGTCTGTGAGCTATAC
AGTAGATTAGCAGGGCGATTTCACATAAATTCACTGAAGGAGCTTGGTAATGTGTTCTCCCACG
AAACCTCCTCTACTGAGCTTAGTGACTTAGAGATGCCCCTGTGATGTCCCTTTAACATTTGAAA
TGCACTGTCGTATCATGGCTCTGTTCCTCTTTTGTCTTTTCCTAAAACATCTAGCTATGTCAGA
AAAGCACACTTATCTACTCCAATAAAGGTGTTGATTATCTGATGAAAAATGTTAAAGAA

hide sequence

RefSeq Acc Id:

XM_039093412 ⟹ XP_038949340

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	98,646,334 - 99,017,256 (+)	NCBI
mRatBN7.2	15	92,238,781 - 92,610,057 (+)	NCBI

RefSeq Acc Id:

XM_039093413 ⟹ XP_038949341

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	98,614,499 - 100,051,275 (+)	NCBI
mRatBN7.2	15	92,207,277 - 93,644,054 (+)	NCBI

RefSeq Acc Id:

XM_039093414 ⟹ XP_038949342

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	98,614,499 - 100,051,275 (+)	NCBI
mRatBN7.2	15	92,207,275 - 93,644,054 (+)	NCBI

RefSeq Acc Id:

XM_063274345 ⟹ XP_063130415

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	98,615,064 - 100,051,275 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100755	(Get FASTA)	NCBI Sequence Viewer
	XP_038949340	(Get FASTA)	NCBI Sequence Viewer
	XP_038949341	(Get FASTA)	NCBI Sequence Viewer
	XP_038949342	(Get FASTA)	NCBI Sequence Viewer
	XP_063130415	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM02509	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000080406.1
	ENSRNOP00000083633.2
	ENSRNOP00000089971.2
	ENSRNOP00000104282
	ENSRNOP00000104282.1
	ENSRNOP00000107793.1
	ENSRNOP00000108316.1
	ENSRNOP00000108934.1

RefSeq Acc Id:	NP_001100755 ⟸ NM_001107285
- Peptide Label:	precursor
- UniProtKB:	A0A8I6ACQ6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDARTWRLGWRCLLLLALLGSTRSEGVESCEEVRKLFQWRLGGAVKGLPEAPRAGPDLQVCLSK NPTCCTRKMEEQYQIAAQQDLQQVLQTSSSTLKLLISRNAAAFQETLETLIRQAENYTSILFCN TYRNMALEAAASTQEFFTDVGLYLFGADVNPEEFVNRFFDSLFPLVYNHLINPGVTDSSLQYSE CIRTARQDVSPFGNIPKRVMGQMGRSLLPGRTFLQALNLGIEVINTTDHIHFSKECSRALLKMQ YCPHCQSLTLSKPCMGYCLNVIRGCLAHMTDLNPHWHAYIRSLEELSDAMHGTYDVEHVLLNFH LLVNDAMLQAHLNAQKLLDQVNKICGLPVRTATQSPRCTFDPSKERHGMKISPRNGEETLANRR KEFINSLRLHRSFYGGLADQLCVNEWAAAEGRPCWNGEDIVKSYAQRVVGNGVKAQSANPEVRV RGTDPVVNQIIDKLKHVIQLLQGRSPKPNKWELLHPGSGGGMLEQSSGDCDDEDGCGGSGSGEV KRTLKITNWMPDSMNFSDVKQVHGADRGSTLDTTGAGCGSGTESMTLLLMGTLMFLPWLW hide sequence

RefSeq Acc Id:	XP_038949342 ⟸ XM_039093414
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038949341 ⟸ XM_039093413
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038949340 ⟸ XM_039093412
- Peptide Label:	isoform X1
- UniProtKB:	A6HUE6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000080406 ⟸ ENSRNOT00000116613

Ensembl Acc Id:

ENSRNOP00000089971 ⟸ ENSRNOT00000112165

Ensembl Acc Id:

ENSRNOP00000083633 ⟸ ENSRNOT00000098995

RefSeq Acc Id:	XP_063130415 ⟸ XM_063274345
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000108316 ⟸ ENSRNOT00000131898

Ensembl Acc Id:

ENSRNOP00000107793 ⟸ ENSRNOT00000168519

Ensembl Acc Id:

ENSRNOP00000104282 ⟸ ENSRNOT00000161833

Ensembl Acc Id:

ENSRNOP00000108934 ⟸ ENSRNOT00000147986

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308835	AgrOrtholog
BioCyc Gene	G2FUF-12482	BioCyc
Ensembl Genes	ENSRNOG00000071105	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000098995.2	UniProtKB/TrEMBL
	ENSRNOT00000112165.2	UniProtKB/TrEMBL
	ENSRNOT00000116613.2	UniProtKB/TrEMBL
	ENSRNOT00000131898.1	UniProtKB/TrEMBL
	ENSRNOT00000147986.1	UniProtKB/TrEMBL
	ENSRNOT00000161833	ENTREZGENE
	ENSRNOT00000161833.1	UniProtKB/TrEMBL
	ENSRNOT00000168519.1	UniProtKB/TrEMBL
InterPro	Glypican	UniProtKB/TrEMBL
	Glypican_CS	UniProtKB/TrEMBL
NCBI Gene	306157	ENTREZGENE
PANTHER	PTHR10822	UniProtKB/TrEMBL
	PTHR10822:SF12	UniProtKB/TrEMBL
Pfam	Glypican	UniProtKB/TrEMBL
PhenoGen	Gpc5	PhenoGen
PROSITE	GLYPICAN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000071105	RatGTEx
UniProt	A0A8I5ZPZ6_RAT	UniProtKB/TrEMBL
	A0A8I5ZXF3_RAT	UniProtKB/TrEMBL
	A0A8I6ACQ6	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LC98_RAT	UniProtKB/TrEMBL
	A0ABK0LE32_RAT	UniProtKB/TrEMBL
	A0ABK0LRH5_RAT	UniProtKB/TrEMBL
	A0ABK0M094_RAT	UniProtKB/TrEMBL
	A6HUE6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Gpc5	glypican 5	Gpc5_predicted	glypican 5 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Gpc5_predicted	glypican 5 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

RGD Manual Annotations

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Imported Disease Annotations - CTD

RGD Manual Annotations