D15Rat25 Marker Search Result - Rat Genome Database

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Marker: D15Rat25

Symbol: D15Rat25
Previously known as: R0019-A03; oxsts6262; R019-A03; 
RGD ID: 35497
Expected Size: 154 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21593,004,744 - 93,004,898 (+)MAPPERmRatBN7.2
Rnor_6.015101,059,401 - 101,059,554NCBIRnor6.0
Rnor_5.015104,508,697 - 104,508,850UniSTSRnor5.0
RGSC_v3.415100,708,158 - 100,708,312RGDRGSC3.4
RGSC_v3.415100,708,159 - 100,708,312UniSTSRGSC3.4
RGSC_v3.115100,723,939 - 100,724,092RGD
Celera1591,866,627 - 91,866,780UniSTS
RH 3.4 Map15632.1UniSTS
RH 3.4 Map15632.1RGD
RH 2.0 Map15519.5RGD
SHRSP x BN Map1558.1398RGD
FHH x ACI Map1570.62RGD
Cytogenetic Map15q24UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Kidm7  
Genes:   Gpc5  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8
8. Electronic Submission of SSLP Data Sets Wilder R. Oct.2000. National Institute of Arthritis and Musculoskeletal and Skin Diseases, ARB Rat Genetic Database

Strains and Sequence

Sequence
 
Forward Primer CACACATGCATGTATGCATATAACA
Reverse Primer CAAACAAAGACTCAGGCTCG
 
Template 
GATCTAGAGGATCCCCACAGAGACACACGTACAAACAAACACACAGACAAATACAGACAGGCAC
ATACAGATGCACACATGCATGTATGCATATAACACACACACACACACACACACACACACACACA
CACACACACACACACCTTCTCAGAACCTGCTAAGAATTACTTGGGTTCTGTGAACATACTAAGA
TAGGAAGAACCTAGTCGAGCCTGAGTCTTTGTTTGGTGTGTTATCACTGACAAAATGTACCCAC
ACTGACATGTGTGGGTATAAAACTTGTGAGGAATGCAAATAAGTATGCCTCAACTATCAGTAGT
GAAGTCAGCATTATGAAATCCCTTACCCGTCCTAACATTAGCTGTTTCACATGGTCCAGGGGAG
AGAAACCCCCTACCCAGTGATGGAGCAAGCCTCAGAGAGCTACTAGACCATATCCACGAATGGA
GTTTAGAAGAGAGTGAAGCTTGAAGGATGTTTGCCCAGATACTACATGTGGTGGGTACGAGCTC
GAATTCGTAATCATGGTCATAGCTGTNTCTGTGTGANTTGTTATCCGCTCCAATTCAACAAATA
GAGCGGAAGCANNAGTGTAAGCTGNGGNCTATGATGACTNCTCAATNNTGCGTGNCATGCNTTC
NNTGGGAACNGTGTGCACTGATATGNCGC

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1308835Gpc5glypican 5159220727593644054Rat

Nucleotide Sequences
GenBank Nucleotide JH618555.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)157369051895018228Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)157369065795018120Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)158226252098288169Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)158226252098288169Rat
1581519Cm59Cardiac mass QTL 592.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)158885347095840528Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
Database Acc Id Source(s)
NCBI Gene 306157 UniSTS
  444919 UniSTS
UniSTS 119460 UniSTS