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Gene: Slc17a2 (solute carrier family 17, member 2) Rattus norvegicus

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Symbol:

Slc17a2

Name:

solute carrier family 17, member 2

RGD ID:

1308821

Description:

Predicted to enable urate transmembrane transporter activity. Predicted to be involved in sodium ion transport; transmembrane transport; and urate transport. Predicted to be located in plasma membrane. Predicted to be active in apical plasma membrane. Orthologous to human SLC17A2 (solute carrier family 17 member 2); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC306950; sodium-dependent phosphate transport protein 3; solute carrier family 17 (sodium phosphate), member 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC17A2 (solute carrier family 17 member 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Slc17a2 (solute carrier family 17 (sodium phosphate), member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc17a2 (solute carrier family 17 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC17A2 (solute carrier family 17 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC17A2 (solute carrier family 17 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc17a2 (solute carrier family 17 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC17A2 (solute carrier family 17 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC17A2 (solute carrier family 17 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc17a2 (solute carrier family 17 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Slc17a2 (solute carrier family 17 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SLC17A4 (solute carrier family 17 member 4)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	SLC17A2 (solute carrier family 17 member 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc17a2 (solute carrier family 17 (sodium phosphate), member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch1073-513e17.1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch1073-513e17.1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	slc17a5 (solute carrier family 17 member 5)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG15096	Alliance	DIOPT (Ensembl Compara\|OMA)
Drosophila melanogaster (fruit fly):	CG15096	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	DAL5	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Saccharomyces cerevisiae (baker's yeast):	SOA1	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Saccharomyces cerevisiae (baker's yeast):	THI73	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Drosophila melanogaster (fruit fly):	CG2003	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Drosophila melanogaster (fruit fly):	CG3036	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG6978	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Drosophila melanogaster (fruit fly):	MFS12	Alliance	DIOPT (Ensembl Compara\|OMA)
Drosophila melanogaster (fruit fly):	MFS12	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Drosophila melanogaster (fruit fly):	MFS14	Alliance	DIOPT (Ensembl Compara\|OMA)
Drosophila melanogaster (fruit fly):	MFS14	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Drosophila melanogaster (fruit fly):	Picot	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Drosophila melanogaster (fruit fly):	dmGlut	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	FEN2	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Drosophila melanogaster (fruit fly):	CG7881	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	YCT1	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Drosophila melanogaster (fruit fly):	MFS9	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	slc-17.2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	MFS15	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Drosophila melanogaster (fruit fly):	CG3649	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Drosophila melanogaster (fruit fly):	MFS17	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	TNA1	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Saccharomyces cerevisiae (baker's yeast):	SEO1	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Saccharomyces cerevisiae (baker's yeast):	VHT1	Alliance	DIOPT (Ensembl Compara\|Hieranoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	41,748,195 - 41,767,601 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	41,748,195 - 41,764,180 (-)	Ensembl				GRCr8
mRatBN7.2	17	41,318,312 - 41,339,012 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	41,319,701 - 41,336,325 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	41,394,439 - 41,410,347 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	42,998,484 - 43,014,397 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	41,277,169 - 41,293,061 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	43,567,528 - 43,584,228 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	43,567,528 - 43,584,152 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	45,421,914 - 45,438,592 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	48,557,119 - 48,573,741 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	40,951,177 - 40,967,800 (-)	NCBI		Celera
RGSC_v3.1	17	48,536,430 - 48,575,608 (+)	NCBI
Cytogenetic Map	17	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

liver cirrhosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,3',4,4'-tetrachlorobiphenyl (ISO)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

amiodarone (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cobalt dichloride (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

D-glucose (ISO)

dibenz[a,h]anthracene (ISO)

dieldrin (EXP)

endosulfan (EXP)

flutamide (EXP)

fructose (ISO)

fulvestrant (ISO)

furan (EXP)

glafenine (EXP)

glucose (ISO)

heptachlor (EXP)

hydrogen peroxide (ISO)

kojic acid (ISO)

leflunomide (EXP)

menadione (ISO)

nefazodone (EXP)

nimesulide (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

propiconazole (ISO)

quercetin (ISO)

resorcinol (ISO)

resveratrol (ISO)

rotenone (EXP)

sodium arsenite (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

triadimefon (ISO)

troglitazone (ISO)

trovafloxacin (EXP)

uranium atom (ISO)

urethane (ISO)

valproic acid (ISO)

zidovudine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

monoatomic ion transport (IEA)

sodium ion transport (IEA)

transmembrane transport (IEA)

urate transport (IEA)

Cellular Component

apical plasma membrane (IBA,IEA,ISO)

Molecular Function

symporter activity (IEA)

transmembrane transporter activity (IBA,IEA)

urate transmembrane transporter activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Slc17a2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	41,748,195 - 41,767,601 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	41,748,195 - 41,764,180 (-)	Ensembl				GRCr8
mRatBN7.2	17	41,318,312 - 41,339,012 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	41,319,701 - 41,336,325 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	41,394,439 - 41,410,347 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	42,998,484 - 43,014,397 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	41,277,169 - 41,293,061 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	43,567,528 - 43,584,228 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	43,567,528 - 43,584,152 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	45,421,914 - 45,438,592 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	48,557,119 - 48,573,741 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	40,951,177 - 40,967,800 (-)	NCBI		Celera
RGSC_v3.1	17	48,536,430 - 48,575,608 (+)	NCBI
Cytogenetic Map	17	p11	NCBI

SLC17A2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	25,912,754 - 25,930,691 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	25,906,892 - 25,930,815 (-)	Ensembl			hg38	GRCh38
GRCh37	6	25,912,982 - 25,930,919 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	26,020,961 - 26,038,818 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	26,020,964 - 26,038,818	NCBI
Celera	6	27,140,178 - 27,158,141 (-)	NCBI		Celera
Cytogenetic Map	6	p22.2	NCBI
HuRef	6	25,856,022 - 25,873,987 (-)	NCBI		HuRef
CHM1_1	6	25,915,216 - 25,933,185 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	25,778,573 - 25,796,593 (-)	NCBI		T2T-CHM13v2.0

Slc17a2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	23,990,924 - 24,009,174 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	23,990,976 - 24,009,163 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	23,806,941 - 23,825,191 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	23,806,993 - 23,825,180 (+)	Ensembl			mm10	GRCm38
MGSCv37	13	23,898,896 - 23,915,394 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	23,814,492 - 23,830,990 (+)	NCBI		MGSCv36	mm8
Celera	13	24,038,724 - 24,055,222 (+)	NCBI		Celera
Cytogenetic Map	13	A3.1	NCBI
cM Map	13	9.94	NCBI

Slc17a2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955483	1,185,757 - 1,201,851 (+)	Ensembl
ChiLan1.0	NW_004955483	1,185,775 - 1,201,851 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC17A2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	40,558,561 - 40,576,490 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	36,560,004 - 36,577,945 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	25,746,100 - 25,764,029 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	26,404,154 - 26,421,989 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	26,404,163 - 26,421,879 (-)	Ensembl			panPan2	panpan1.1

SLC17A2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	23,839,113 - 23,919,789 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	23,840,934 - 23,853,385 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	23,742,823 - 23,774,994 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	23,956,046 - 24,034,967 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	35	23,907,888 - 23,972,065 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	35	23,772,195 - 23,851,213 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	23,823,047 - 23,902,139 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	25,256,073 - 25,334,970 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Slc17a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	1,788,222 - 1,803,764 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936671	1,818,052 - 1,829,059 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936671	1,818,052 - 1,828,993 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC17A2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	20,644,244 - 20,663,423 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	20,596,547 - 20,663,498 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SLC17A2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	46,329,330 - 46,342,234 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	46,329,529 - 46,342,657 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666044	25,844,734 - 25,865,274 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc17a2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624756	1,088,943 - 1,106,509 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624756	1,088,919 - 1,119,361 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Slc17a2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	14	42,791,889 - 42,803,363 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Slc17a2
39 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	317
Count of miRNA genes:	209
Interacting mature miRNAs:	242
Transcripts:	ENSRNOT00000023241
Prediction methods:	Microtar, Miranda, Pita, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552966	Pigfal18	Plasma insulin-like growth factor 1 level QTL 18	8.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	12860942	57860942	Rat
1300123	Bp194	Blood pressure QTL 194	2.82		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	2120843	42054133	Rat
2302377	Scl61	Serum cholesterol level QTL 61	4.36		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	17	6221998	58177198	Rat
1354654	Spl7	Serum phospholipid level QTL 7	5.5		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	17	38031354	83031354	Rat
70157	Niddm32	Non-insulin dependent diabetes mellitus QTL 32	4.34		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	22660799	55604694	Rat
9589151	Insul30	Insulin level QTL 30	8.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	12860942	57860942	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40968017	89341781	Rat
1354628	Stl13	Serum triglyceride level QTL 13	3.8		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	21498994	50592236	Rat
1354629	Scl31	Serum cholesterol level QTL 31	4.1		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	17	38031354	83031354	Rat
1600398	Edcs5	Endometrial carcinoma susceptibility QTL 5	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	17	35446949	75762341	Rat
9590154	Scort9	Serum corticosterone level QTL 9	23.57	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	12860942	57860942	Rat
1559055	Bp278	Blood pressure QTL 278		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23858926	68858926	Rat
152025238	Slep14	Serum leptin concentration QTL 14	4.62		blood leptin amount (VT:0005667)		17	24390595	84432719	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	38031354	83031354	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	38031354	83031354	Rat
1331765	Hrtrt15	Heart rate QTL 15	4.094		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	17	15537025	60531414	Rat
7411666	Foco31	Food consumption QTL 31	11.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	17	12860942	57860942	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4733534	49733534	Rat
4889955	Bss93	Bone structure and strength QTL 93	4.4		tibia size trait (VT:0100001)	tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)	17	27233445	65155015	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	43999106	Rat
1300129	Rf25	Renal function QTL 25	3.03		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	17	41062352	86062352	Rat
152023740	Bp406	Blood pressure QTL 406	6.06		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	32199534	86201342	Rat
7488966	Bp370	Blood pressure QTL 370		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23858926	68858926	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	43999106	Rat
152023737	Bp405	Blood pressure QTL 405	5.06		arterial blood pressure trait (VT:2000000)			24136127	84432719	Rat
152023736	Bp404	Blood pressure QTL 404	3.78		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
724528	Uae4	Urinary albumin excretion QTL 4	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	17	36045537	81045537	Rat
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	43999106	Rat
70210	Cm15	Cardiac mass QTL 15	6.5		heart right ventricle mass (VT:0007033)	heart right ventricle wet weight (CMO:0000072)	17	30066472	75066472	Rat
152023626	Bp403	Blood pressure QTL 403	3.86		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
9590107	Sffal7	Serum free fatty acids level QTL 7	4.81	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	17	33104645	78104645	Rat
724549	Niddm56	Non-insulin dependent diabetes mellitus QTL 56		0.03	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	32199534	49497050	Rat
1581512	Cm55	Cardiac mass QTL 55	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	27233445	83975845	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4733534	49733534	Rat
61394	Bp8	Blood pressure QTL 8	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	23286322	64246472	Rat
9589057	Scfw6	Subcutaneous fat weight QTL 6	8.62	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	17	12860942	57860942	Rat
2317045	Aia11	Adjuvant induced arthritis QTL 11	4.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	26522051	71522051	Rat
10450503	Bp386	Blood pressure QTL 386		0.28	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	22019705	67019705	Rat
9590088	Insglur7	Insulin/glucose ratio QTL 7	20.38	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	17	12860942	57860942	Rat
2313854	Bp343	Blood pressure QTL 343	3.9		life span trait (VT:0005372)	age at time of death (CMO:0001193)	17	32199534	55604694	Rat
2317053	Aia25	Adjuvant induced arthritis QTL 25	2.69		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	10604694	55604694	Rat
8552928	Pigfal9	Plasma insulin-like growth factor 1 level QTL 9	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	33104645	78104645	Rat
12903980	Cm120	Cardiac mass QTL 120		0.002	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	17	23858926	68858926	Rat
12903981	Am17	Aortic mass QTL 17		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	17	23858926	68858926	Rat
4889891	Eae32	Experimental allergic encephalomyelitis QTL 32	4.8	0.0002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	27233445	72233445	Rat
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23858926	68858926	Rat
12903978	Cm118	Cardiac mass QTL 118		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	23858926	68858926	Rat
12903979	Cm119	Cardiac mass QTL 119		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	23858926	68858926	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	37687877	82687877	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
9	10	19	72	90	88	59	24	59	6	227	74	11	48	77	75	29	2	2

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC130391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000023241 ⟹ ENSRNOP00000023241

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	41,748,195 - 41,764,180 (-)	Ensembl
mRatBN7.2 Ensembl	17	41,319,701 - 41,336,325 (-)	Ensembl
Rnor_6.0 Ensembl	17	43,567,528 - 43,584,152 (-)	Ensembl

RefSeq Acc Id:

NM_001107353 ⟹ NP_001100823

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,748,195 - 41,764,180 (-)	NCBI
mRatBN7.2	17	41,320,339 - 41,336,325 (-)	NCBI
Rnor_6.0	17	43,567,528 - 43,584,152 (-)	NCBI
Rnor_5.0	17	45,421,914 - 45,438,592 (-)	NCBI
RGSC_v3.4	17	48,557,119 - 48,573,741 (+)	RGD
Celera	17	40,951,177 - 40,967,800 (-)	RGD

Sequence:

show sequence

GCTAGCTTTCTAGTCTAGTCCTTCAAATACTAGTTTAATGGTGAAGGTAAGTGGTTTTCTTCTT
TTAAATAGGATGTTAATTACGAAGCTATCAGAGATGCATTCAAGGGTGGAAGTAACGTTAAGAG
AACTCAAAAACACACCAACTGCTGCCTGAGGACCTCCGTTTGGGAATGGTGTCTGGTTCTGGAG
AAGAAGAAGCTTTCCTACAAAATAATTATCCAATCAAGACGCTAAGGTTTGAGTGGCCACTGGT
GTCAAGGGCCACTGTGGATCGTGGTCACTAGCCAGAGGAGTCAAAGCCTGTCGTGGTGAAAGTG
ATTTGGGGCAGAGGGAAACTCCGCCATAAAGTACACATCATTCACCAGAGAAACAAAATGGATG
AGAAGCCTACCACCAGGAAAGGGTCAGGTTTCTGCTCTTTACGCTATGCGTTGGCTCTCGTCAT
GCACTTCTCCAACTTCACCATGATAACGCAGCGTGTGAGTCTGAGCATTGCCATCATTGCCATG
GTGAACAGCACACAGCATCAGGACCCAGCTAATGCATCCGCTGAGGGGCCCGTGATGAATCTCC
TCAGTAACCGGAGCAGAGGCATCAAGGACTTTAGCACCCGAGCTGCTGTTTATCAGTGGAGCAC
AGAGACCCAGGGCATCATCTTTAGCTCCATCAGCTATGGAATCATACTGACGTTAATTCCAAGT
GGATACTTAGCGGGGATATTTGGAGCAAAGCAGATCCTGGGTGCTGGGTTGCTCATCTCATCCC
TGCTCACGCTCTTTACTCCACTGGCTGCTGACTTTGGGGTAATTTTGGTCATCGTCATCCGCAC
AGTCCAGGGGATGGCACAGGGGATGTCATGGACCGGGCAGTTCACAATTTGGGCGAAGTGGGCT
CCGCCACTTGAACGGAGCAAGCTCACCAGCATTGCAGGCTCAGGAGCAGCATTTGGATCCTTCA
TCATCCTCTGTGTGGGGGGATTAATTTCACAGGCACTGGGCTGGCCCTTTATCTTCTACATCTT
TGGTAGCATTGGCTGTGTCTGCTGTGTCCTGTGGTTCACGATGATTTATGATGACCCCATGCAT
CACCCATGCATAAGTGTGAAGGAGAAGGAATACATCACATCCTCAGTGGCTCAGCAGTCTAGTT
CTCCCAGAAGATCCATCCCCATAAAGGCAATGGTCAGATGCCTGCCACTGTGGGCCATTTTCAT
GGGTTTTTTCAGTCATTTCTGGCTTTGCACCATAATCATAACCTACTTACCGACGTACATCAGT
ACAGTGCTCCACGTTAACATCAGAGATAGTGGGGTTCTGTCCTCCCTGCCTTTCATTGCTGCCT
CAAGCTGTACAATTTTAGGAGGTCAGATGGCAGATTTCCTTCTATCCAGGAATCTTCTCAGCTT
AATCACAGTTCGAAAACTCTTTTCATCCCTGGGGCTCCTCCTTCCATCCCTCTGTGCTGTGGCC
CTGCCCTTTGTGACTTCCAGTTACATAGCAACCATTGTTTTGCTGATACTCATTCCTGGGACCA
GCAATCTCTGTGACTCAGGGTTCATCATCAACACCCTAGATGTTGCCCCCAGATATGCAAGTTT
CCTCATGGGCATCTCAAGGGGATTTGGTCTTACAGCAGGAATCATCTCGTCCACTACCACCGGA
TTCCTCATCAGTCAGGTTGGGCATGTTATTGAACATCTGCAAGTGGCAGGATTCTGAATCAGGA
TGGAGGAATGTGTTTTTCCTGTCTGCTGCAGTCAACATGTTTGGTCTGATCTTTTATCTCATAT
TTGGACAAGCAGAAATCCAGAACTGGGCCAAAGAGAGGACTCTCACCCGCCTCTGAGGATGTAG
GGTTGGAATCCAACCAAAGTGCTGACCCTTAACATATTTTGCTTATCACCATTCTTTCTTTGTA
TTTATGTCCATAGAAACAGCACTTCTCTATTCTGGCTGGGTGCTAGCTTTTTTCAAGGAGCTTC
AGAAACAGATCCCAGGCTATACTCCAGAGTGAGTTAGTCTGAAGTGGAACCCAGGTGCCACTAA
GTTTTAGACTCCCTGGGAGTTTTTCCAACACGCAACTGTGGTTGATAACTAGTAGAGGAATTTG
AAGTCAATTTTAGTTGCCTTTGAATTTTCCTCTTTGGGAAGTACTAGATGAATAAAAATCTATC
TGAAATAATCTGATAAATACCTTCATTGAGACTGTTAGAAGAACAGAAAAGGTCTTATAGGAAT
TGTACCTATAAACTATAAAACTCAGCAAAGAACAGAGTTGAAACCTATAATGATAGAATTAACT
TTATTCCTTTTATAATACTCCAGGAAACATGCATGCAGTTAGATGCTGTTAAAATAAACATGCT
AAGATTAAACAGAGTACATTAAAGCTATGTACACTAGGATTCTTTCTAAAGGTGGAATAATATT
TATAAATCCTAGCCAACTTCTTGGAGGTTATGACCAGAAAATAACAAGAAAAAGATTCAATGAA
TGAGGTTAAAATGGAATACAGGAAGAAAGATTGAATAGATACCAGAAAGGGCAAAGTTGACCCC
TTAAAACACTATCAGAGTTTAGTCATGTGGTGAAAACATAAAGAGAAGATAGAAACACTCTTAA
GTGAACATCAGGGAAGAAATTTATAAGGGTAAGATGAATTGGAGAGAGGCTTGGAAAGAAATTG
TGTAAAAGACATTCATCCTGAAGATAGACTATGTGACCCTCATAGTCTTCCAAATAGTCATATT
CAACTACAGAATAAAATACAGTAGTAATTGGTTGGGGTTTTAATGTATACAATATACTATAAGG
TACGCC

hide sequence

RefSeq Acc Id:

XM_006253966 ⟹ XP_006254028

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,748,195 - 41,764,018 (-)	NCBI
mRatBN7.2	17	41,318,312 - 41,339,000 (-)	NCBI
Rnor_6.0	17	43,567,959 - 43,584,226 (-)	NCBI
Rnor_5.0	17	45,421,914 - 45,438,592 (-)	NCBI

Sequence:

show sequence

GCGGAGTCCTGTTCCCACGTGATTCGTTACGTTTCCCTGTGAAGGGAGGACGACACAGGAACGC
CTTTTGTCAAGCTAGCTTTCTAGTCTAGTCCTTCAAATACTAGTTTAATGGTGAAGGTAAGTGG
TTTTCTTCTTTTAAATAGGATGTTAATTACGAAGCTATCAGAGATGCATTCAAGGGTGGAAGTA
ACGTTAAGAGAACTCAAAAACACACCAACTGCTGCCTGAGGACCTCCGTTTGGGAATGGTGTCT
GGTTCTGGAGAAGAAGAAGCTTTCCTACAAAATAATTATCCAATCAAGACGCTAAGGTTTGAGT
GGCCACTGGTGTCAAGGGCCACTGTGGATCGTGGTCACTAGCCAGAGGAACCTGTCAAAGCCTG
TCGTGGTGAAAGTGATTTGGGGCAGAGGGAAACTCCGCCATAAAGTACACATCATTCACCAGAG
AAACAAAATGGATGAGAAGCCTACCACCAGGAAAGGGTCAGGTTTCTGCTCTTTACGCTATGCG
TTGGCTCTCGTCATGCACTTCTCCAACTTCACCATGATAACGCAGCGTGTGAGTCTGAGCATTG
CCATCATTGCCATGGTGAACAGCACACAGCATCAGGACCCAGCTAATGCATCCGCTGAGGGGCC
CGTGATGAATCTCCTCAGTAACCGGAGCAGAGGCATCAAGGACTTTAGCACCCGAGCTGCTGTT
TATCAGTGGAGCACAGAGACCCAGGGCATCATCTTTAGCTCCATCAGCTATGGAATCATACTGA
CGTTAATTCCAAGTGGATACTTAGCGGGGATATTTGGAGCAAAGCAGATCCTGGGTGCTGGGTT
GCTCATCTCATCCCTGCTCACGCTCTTTACTCCACTGGCTGCTGACTTTGGGGTAATTTTGGTC
ATCGTCATCCGCACAGTCCAGGGGATGGCACAGGGGATGTCATGGACCGGGCAGTTCACAATTT
GGGCGAAGTGGGCTCCGCCACTTGAACGGAGCAAGCTCACCAGCATTGCAGGCTCAGGAGCAGC
ATTTGGATCCTTCATCATCCTCTGTGTGGGGGGATTAATTTCACAGGCACTGGGCTGGCCCTTT
ATCTTCTACATCTTTGGTAGCATTGGCTGTGTCTGCTGTGTCCTGTGGTTCACGATGATTTATG
ATGACCCCATGCATCACCCATGCATAAGTGTGAAGGAGAAGGAATACATCACATCCTCAGTGGC
TCAGCAGTCTAGTTCTCCCAGAAGATCCATCCCCATAAAGGCAATGGTCAGATGCCTGCCACTG
TGGGCCATTTTCATGGGTTTTTTCAGTCATTTCTGGCTTTGCACCATAATCATAACCTACTTAC
CGACGTACATCAGTACAGTGCTCCACGTTAACATCAGAGATAGTGGGGTTCTGTCCTCCCTGCC
TTTCATTGCTGCCTCAAGCTGTACAATTTTAGGAGGTCAGATGGCAGATTTCCTTCTATCCAGG
AATCTTCTCAGCTTAATCACAGTTCGAAAACTCTTTTCATCCCTGGGGCTCCTCCTTCCATCCC
TCTGTGCTGTGGCCCTGCCCTTTGTGACTTCCAGTTACATAGCAACCATTGTTTTGCTGATACT
CATTCCTGGGACCAGCAATCTCTGTGACTCAGGGTTCATCATCAACACCCTAGATGTTGCCCCC
AGATATGCAAGTTTCCTCATGGGCATCTCAAGGGGATTTGGTCTTACAGCAGGAATCATCTCGT
CCACTACCACCGGATTCCTCATCAGTCAGGATTCTGAATCAGGATGGAGGAATGTGTTTTTCCT
GTCTGCTGCAGTCAACATGTTTGGTCTGATCTTTTATCTCATATTTGGACAAGCAGAAATCCAG
AACTGGGCCAAAGAGAGGACTCTCACCCGCCTCTGAGGATGTAGGGTTGGAATCCAACCAAAGT
GCTGACCCTTAACATATTTTGCTTATCACCATTCTTTCTTTGTATTTATGTCCATAGAAACAGC
ACTTCTCTATTCTGGCTGGGTGCTAGCTTTTTTCAAGGAGCTTCAGAAACAGATCCCAGGCTAT
ACTCCAGAGTGAGTTAGTCTGAAGTGGAACCCAGGTGCCACTAAGTTTTAGACTCCCTGGGAGT
TTTTCCAACACGCAACTGTGGTTGATAACTAGTAGAGGAATTTGAAGTCAATTTTAGTTGCCTT
TGAATTTTCCTCTTTGGGAAGTACTAGATGAATAAAAATCTATCTGAAATAATCTGATAAATAC
CTTCATTGAGACTGTTAGAAGAACAGAAAAGGTCTTATAGGAATTGTACCTATAAACTATAAAA
CTCAGCAAAGAACAGAGTTGAAACCTATAATGATAGAATTAACTTTATTCCTTTTATAATACTC
CAGGAAACATGCATGCAGTTAGATGCTGTTAAAATAAACATGCTAAGATTAAACAGAGTACATT
AAA

hide sequence

RefSeq Acc Id:

XM_006253967 ⟹ XP_006254029

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,748,195 - 41,767,586 (-)	NCBI
mRatBN7.2	17	41,318,312 - 41,339,000 (-)	NCBI
Rnor_6.0	17	43,567,959 - 43,584,226 (-)	NCBI
Rnor_5.0	17	45,421,914 - 45,438,592 (-)	NCBI

Sequence:

show sequence

GCGGAGTCCTGTTCCCACGTGATTCGTTACGTTTCCCTGTGAAGGGAGGACGACACAGGAACGC
CTTTTGTCAAGCTAGCTTTCTAGTCTAGTCCTTCAAATACTAGTTTAATGGTGAAGGTCAAAGC
CTGTCGTGGTGAAAGTGATTTGGGGCAGAGGGAAACTCCGCCATAAAGTACACATCATTCACCA
GAGAAACAAAATGGATGAGAAGCCTACCACCAGGAAAGGGTCAGGTTTCTGCTCTTTACGCTAT
GCGTTGGCTCTCGTCATGCACTTCTCCAACTTCACCATGATAACGCAGCGTGTGAGTCTGAGCA
TTGCCATCATTGCCATGGTGAACAGCACACAGCATCAGGACCCAGCTAATGCATCCGCTGAGGG
GCCCGTGATGAATCTCCTCAGTAACCGGAGCAGAGGCATCAAGGACTTTAGCACCCGAGCTGCT
GTTTATCAGTGGAGCACAGAGACCCAGGGCATCATCTTTAGCTCCATCAGCTATGGAATCATAC
TGACGTTAATTCCAAGTGGATACTTAGCGGGGATATTTGGAGCAAAGCAGATCCTGGGTGCTGG
GTTGCTCATCTCATCCCTGCTCACGCTCTTTACTCCACTGGCTGCTGACTTTGGGGTAATTTTG
GTCATCGTCATCCGCACAGTCCAGGGGATGGCACAGGGGATGTCATGGACCGGGCAGTTCACAA
TTTGGGCGAAGTGGGCTCCGCCACTTGAACGGAGCAAGCTCACCAGCATTGCAGGCTCAGGAGC
AGCATTTGGATCCTTCATCATCCTCTGTGTGGGGGGATTAATTTCACAGGCACTGGGCTGGCCC
TTTATCTTCTACATCTTTGGTAGCATTGGCTGTGTCTGCTGTGTCCTGTGGTTCACGATGATTT
ATGATGACCCCATGCATCACCCATGCATAAGTGTGAAGGAGAAGGAATACATCACATCCTCAGT
GGCTCAGCAGTCTAGTTCTCCCAGAAGATCCATCCCCATAAAGGCAATGGTCAGATGCCTGCCA
CTGTGGGCCATTTTCATGGGTTTTTTCAGTCATTTCTGGCTTTGCACCATAATCATAACCTACT
TACCGACGTACATCAGTACAGTGCTCCACGTTAACATCAGAGATAGTGGGGTTCTGTCCTCCCT
GCCTTTCATTGCTGCCTCAAGCTGTACAATTTTAGGAGGTCAGATGGCAGATTTCCTTCTATCC
AGGAATCTTCTCAGCTTAATCACAGTTCGAAAACTCTTTTCATCCCTGGGGCTCCTCCTTCCAT
CCCTCTGTGCTGTGGCCCTGCCCTTTGTGACTTCCAGTTACATAGCAACCATTGTTTTGCTGAT
ACTCATTCCTGGGACCAGCAATCTCTGTGACTCAGGGTTCATCATCAACACCCTAGATGTTGCC
CCCAGATATGCAAGTTTCCTCATGGGCATCTCAAGGGGATTTGGTCTTACAGCAGGAATCATCT
CGTCCACTACCACCGGATTCCTCATCAGTCAGGATTCTGAATCAGGATGGAGGAATGTGTTTTT
CCTGTCTGCTGCAGTCAACATGTTTGGTCTGATCTTTTATCTCATATTTGGACAAGCAGAAATC
CAGAACTGGGCCAAAGAGAGGACTCTCACCCGCCTCTGAGGATGTAGGGTTGGAATCCAACCAA
AGTGCTGACCCTTAACATATTTTGCTTATCACCATTCTTTCTTTGTATTTATGTCCATAGAAAC
AGCACTTCTCTATTCTGGCTGGGTGCTAGCTTTTTTCAAGGAGCTTCAGAAACAGATCCCAGGC
TATACTCCAGAGTGAGTTAGTCTGAAGTGGAACCCAGGTGCCACTAAGTTTTAGACTCCCTGGG
AGTTTTTCCAACACGCAACTGTGGTTGATAACTAGTAGAGGAATTTGAAGTCAATTTTAGTTGC
CTTTGAATTTTCCTCTTTGGGAAGTACTAGATGAATAAAAATCTATCTGAAATAATCTGATAAA
TACCTTCATTGAGACTGTTAGAAGAACAGAAAAGGTCTTATAGGAATTGTACCTATAAACTATA
AAACTCAGCAAAGAACAGAGTTGAAACCTATAATGATAGAATTAACTTTATTCCTTTTATAATA
CTCCAGGAAACATGCATGCAGTTAGATGCTGTTAAAATAAACATGCTAAGATTAAACAGAGTAC
ATTAAA

hide sequence

RefSeq Acc Id:

XM_039095702 ⟹ XP_038951630

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,748,195 - 41,762,135 (-)	NCBI
mRatBN7.2	17	41,318,312 - 41,339,002 (-)	NCBI

RefSeq Acc Id:

XM_039095703 ⟹ XP_038951631

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,748,195 - 41,759,949 (-)	NCBI
mRatBN7.2	17	41,318,312 - 41,332,089 (-)	NCBI

RefSeq Acc Id:

XM_039095704 ⟹ XP_038951632

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,748,195 - 41,762,135 (-)	NCBI
mRatBN7.2	17	41,318,312 - 41,339,000 (-)	NCBI

RefSeq Acc Id:

XM_039095705 ⟹ XP_038951633

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,748,195 - 41,762,135 (-)	NCBI
mRatBN7.2	17	41,320,667 - 41,338,995 (-)	NCBI

RefSeq Acc Id:

XM_039095706 ⟹ XP_038951634

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,748,195 - 41,762,135 (-)	NCBI
mRatBN7.2	17	41,318,312 - 41,339,002 (-)	NCBI

RefSeq Acc Id:

XM_039095707 ⟹ XP_038951635

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,748,195 - 41,764,018 (-)	NCBI
mRatBN7.2	17	41,318,312 - 41,339,006 (-)	NCBI

RefSeq Acc Id:

XM_039095709 ⟹ XP_038951637

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,748,195 - 41,767,601 (-)	NCBI
mRatBN7.2	17	41,318,312 - 41,339,007 (-)	NCBI

RefSeq Acc Id:

XM_039095710 ⟹ XP_038951638

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,750,915 - 41,762,135 (-)	NCBI
mRatBN7.2	17	41,323,059 - 41,339,009 (-)	NCBI

RefSeq Acc Id:

XM_039095711 ⟹ XP_038951639

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,750,916 - 41,762,135 (-)	NCBI
mRatBN7.2	17	41,323,060 - 41,339,010 (-)	NCBI

RefSeq Acc Id:

XM_039095712 ⟹ XP_038951640

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,750,696 - 41,762,135 (-)	NCBI
mRatBN7.2	17	41,322,840 - 41,339,012 (-)	NCBI

RefSeq Acc Id:

XR_010058868

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,749,852 - 41,762,135 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100823	(Get FASTA)	NCBI Sequence Viewer
	XP_006254028	(Get FASTA)	NCBI Sequence Viewer
	XP_006254029	(Get FASTA)	NCBI Sequence Viewer
	XP_038951630	(Get FASTA)	NCBI Sequence Viewer
	XP_038951631	(Get FASTA)	NCBI Sequence Viewer
	XP_038951632	(Get FASTA)	NCBI Sequence Viewer
	XP_038951633	(Get FASTA)	NCBI Sequence Viewer
	XP_038951634	(Get FASTA)	NCBI Sequence Viewer
	XP_038951635	(Get FASTA)	NCBI Sequence Viewer
	XP_038951637	(Get FASTA)	NCBI Sequence Viewer
	XP_038951638	(Get FASTA)	NCBI Sequence Viewer
	XP_038951639	(Get FASTA)	NCBI Sequence Viewer
	XP_038951640	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL86559	(Get FASTA)	NCBI Sequence Viewer
	EDL86560	(Get FASTA)	NCBI Sequence Viewer
	EDL86561	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000023241
	ENSRNOP00000023241.6

RefSeq Acc Id:

NP_001100823 ⟸ NM_001107353

- UniProtKB:

D4A3I8 (UniProtKB/TrEMBL), A6KLL5 (UniProtKB/TrEMBL), A6KLL4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDEKPTTRKGSGFCSLRYALALVMHFSNFTMITQRVSLSIAIIAMVNSTQHQDPANASAEGPVM
NLLSNRSRGIKDFSTRAAVYQWSTETQGIIFSSISYGIILTLIPSGYLAGIFGAKQILGAGLLI
SSLLTLFTPLAADFGVILVIVIRTVQGMAQGMSWTGQFTIWAKWAPPLERSKLTSIAGSGAAFG
SFIILCVGGLISQALGWPFIFYIFGSIGCVCCVLWFTMIYDDPMHHPCISVKEKEYITSSVAQQ
SSSPRRSIPIKAMVRCLPLWAIFMGFFSHFWLCTIIITYLPTYISTVLHVNIRDSGVLSSLPFI
AASSCTILGGQMADFLLSRNLLSLITVRKLFSSLGLLLPSLCAVALPFVTSSYIATIVLLILIP
GTSNLCDSGFIINTLDVAPRYASFLMGISRGFGLTAGIISSTTTGFLISQVGHVIEHLQVAGF

hide sequence

RefSeq Acc Id:	XP_006254029 ⟸ XM_006253967
- Peptide Label:	isoform X2
- UniProtKB:	A6KLL4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDEKPTTRKGSGFCSLRYALALVMHFSNFTMITQRVSLSIAIIAMVNSTQHQDPANASAEGPVM NLLSNRSRGIKDFSTRAAVYQWSTETQGIIFSSISYGIILTLIPSGYLAGIFGAKQILGAGLLI SSLLTLFTPLAADFGVILVIVIRTVQGMAQGMSWTGQFTIWAKWAPPLERSKLTSIAGSGAAFG SFIILCVGGLISQALGWPFIFYIFGSIGCVCCVLWFTMIYDDPMHHPCISVKEKEYITSSVAQQ SSSPRRSIPIKAMVRCLPLWAIFMGFFSHFWLCTIIITYLPTYISTVLHVNIRDSGVLSSLPFI AASSCTILGGQMADFLLSRNLLSLITVRKLFSSLGLLLPSLCAVALPFVTSSYIATIVLLILIP GTSNLCDSGFIINTLDVAPRYASFLMGISRGFGLTAGIISSTTTGFLISQDSESGWRNVFFLSA AVNMFGLIFYLIFGQAEIQNWAKERTLTRL hide sequence

RefSeq Acc Id:	XP_006254028 ⟸ XM_006253966
- Peptide Label:	isoform X2
- UniProtKB:	A6KLL4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDEKPTTRKGSGFCSLRYALALVMHFSNFTMITQRVSLSIAIIAMVNSTQHQDPANASAEGPVM NLLSNRSRGIKDFSTRAAVYQWSTETQGIIFSSISYGIILTLIPSGYLAGIFGAKQILGAGLLI SSLLTLFTPLAADFGVILVIVIRTVQGMAQGMSWTGQFTIWAKWAPPLERSKLTSIAGSGAAFG SFIILCVGGLISQALGWPFIFYIFGSIGCVCCVLWFTMIYDDPMHHPCISVKEKEYITSSVAQQ SSSPRRSIPIKAMVRCLPLWAIFMGFFSHFWLCTIIITYLPTYISTVLHVNIRDSGVLSSLPFI AASSCTILGGQMADFLLSRNLLSLITVRKLFSSLGLLLPSLCAVALPFVTSSYIATIVLLILIP GTSNLCDSGFIINTLDVAPRYASFLMGISRGFGLTAGIISSTTTGFLISQDSESGWRNVFFLSA AVNMFGLIFYLIFGQAEIQNWAKERTLTRL hide sequence

Ensembl Acc Id:

ENSRNOP00000023241 ⟸ ENSRNOT00000023241

RefSeq Acc Id:	XP_038951637 ⟸ XM_039095709
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038951635 ⟸ XM_039095707
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038951634 ⟸ XM_039095706
- Peptide Label:	isoform X4
- UniProtKB:	A6KLL4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951630 ⟸ XM_039095702
- Peptide Label:	isoform X1
- UniProtKB:	A6KLL4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951632 ⟸ XM_039095704
- Peptide Label:	isoform X2
- UniProtKB:	A6KLL4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951631 ⟸ XM_039095703
- Peptide Label:	isoform X1
- UniProtKB:	A6KLL4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951633 ⟸ XM_039095705
- Peptide Label:	isoform X3
- UniProtKB:	A6KLL4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951640 ⟸ XM_039095712
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038951638 ⟸ XM_039095710
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038951639 ⟸ XM_039095711
- Peptide Label:	isoform X7

Protein Domains

Major facilitator superfamily (MFS) profile

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A3I8-F1-model_v2	AlphaFold	D4A3I8	1-447	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700451

Promoter ID:

EPDNEW_R10975

Type:

initiation region

Name:

Slc17a2_1

Description:

solute carrier family 17, member 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	43,584,164 - 43,584,224	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308821	AgrOrtholog
BioCyc Gene	G2FUF-9389	BioCyc
Ensembl Genes	ENSRNOG00000017180	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000023241	ENTREZGENE
	ENSRNOT00000023241.8	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1250.20	UniProtKB/TrEMBL
InterPro	Major_facilitator_SF	UniProtKB/TrEMBL
	MFS_1	UniProtKB/TrEMBL
	MFS_Na/Anion_cotransporter	UniProtKB/TrEMBL
	MFS_trans_sf	UniProtKB/TrEMBL
KEGG Report	rno:306950	UniProtKB/TrEMBL
NCBI Gene	306950	ENTREZGENE
PANTHER	SODIUM-DEPENDENT PHOSPHATE TRANSPORT PROTEIN 3	UniProtKB/TrEMBL
	SOLUTE CARRIER FAMILY 17	UniProtKB/TrEMBL
Pfam	MFS_1	UniProtKB/TrEMBL
PhenoGen	Slc17a2	PhenoGen
PROSITE	MFS	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017180	RatGTEx
Superfamily-SCOP	MFS_gen_substrate_transporter	UniProtKB/TrEMBL
UniProt	A6KLL4	ENTREZGENE, UniProtKB/TrEMBL
	A6KLL5	ENTREZGENE, UniProtKB/TrEMBL
	D4A3I8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-08-02	Slc17a2	solute carrier family 17, member 2	Slc17a2	solute carrier family 17 (sodium phosphate), member 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Slc17a2	solute carrier family 17 (sodium phosphate), member 2	Slc17a2_predicted	solute carrier family 17 (sodium phosphate), member 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Slc17a2_predicted	solute carrier family 17 (sodium phosphate), member 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD